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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:4285346..4287241+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_010763-T1 ID=KJC3_010763-T1|Name=KJC3_010763-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1896bp|location=Sequence derived from alignment at ch7:4285346..4287241+ (Aspergillus niger KJC3)
CCCGGCTCCATTCAACTAGTCACACATCCTGGTCAGGCTAAGCAGGAGTT
CTAAATCAACTGTGCCTTTTCCTATCTTGATAAGTCTCATCTTATGGATT
GTGAAACCACCGATAAATAGGGCTAGAATACTTGAACGACGCCTCCTTTC
GTCCGCTGCTTTCCCCTTGCCCTTTTCTTCCCCGGTTGCCTTTAATACCA
TAACATGTCCACCCAGCCCCCATCACCACATGTAGGGGTCATTGTGAATC
CGTCTGCGCGCCGTGCTGCCTGCGACCAGTGTCACACCCAAAAGCTGCGT
TGTACCAAGCTGGAAGACTGCACGGTGTGCGTTCGATGTCAGCGTCTGAA
CCGGCAATGCATTTGGAGTCCTCCATCGCGGAGTGGCCGTCCGGCAAGGA
CTACTGCCAAGGAAACGCTGATGAGGCGTTCTGGTCGCTCTGAACTTACT
GCGCGGGAGAAGCATCGCAAACGATCGTCTAATATTCTAGACATGACACC
AGAAGAGAGCGGTCACTCGGACGGTGCGCGAGAGCATGTTCACTCCAACC
CTGGCAAGACTCTCACTCCCCCTTCTCCTTCTCCTCCTGTCGAAATAGCA
GAGGTACCGCCGTCATCAAGGCCTCCTTCCAGTGCAGAATGGAACATGTC
CGATATTCTCACCTTTCCAAGCCCGCGTGATAGCTCACGGGAGAATCTCT
TCCCCCCTTGGTGGGTATCAGATAGCGTTGTTCCTTCGATGCCCAATTTG
ACCGAGTATTTCCAACTGCCTGTCAATGGATCAGCAAGCCCGGGCGATCA
ACCCGGAATCCCCGAAGATAGAAGCGCACCCTCAGGACTCGAGTCTCTGC
GCGACATTACTCGAGAGCTCTCCAACGTCAACCTGTCGTTATTGGACCTC
GAGCAATCCCTCCACGCCGAGCCATGGGGTCCGATGTTCGCATCTCCAGC
CGCCGTGATCACCAAACTAAGCGCCTGTGGCAGCGGTGACCAGCTGGACG
GCACGCTCGCTCACGGGTATCCATTAATCGAAATATTCAAGCATACACAG
CGCTTCATCGACATTGCAAAGCAAACAAGCGTTTATTTCGCATCACTGCC
CACCACGTCTGCATCAACGTCGACCTCGTCCTCCACAGCCCAGCCACCAT
CACACCCAGACAGCAACGACACCTCAAGCCAGGGGTCATCTCCATTCTCC
CGTCCAGGAGACGGGCATCTTCCGTACACTGCGTCTTCACCCAGCACGAC
CCGAGGAGACCGACTAGTCTGCACAGCAAGCAGCTGCGATTCACCCACCG
CGCTTCTCTTCACTGCTGGCTACGCGCGGATTCTCGACATTTACCTGACC
GTCCTCACACAGACGTCGAATTTTGTTCACGCACTCTCCATGCAGTCGAG
GTCCGGGGGCCCGGACTATCGCCAACGAATGCACCCGGTTATCCCACCGT
TGCAGTGGGGTGGATTCCGGCCCGCAAATTACGGTGCCTTGCAGATCTTA
ATGATCATCCAGGTGATCTCCTATCTCCTCACAGAGGTTGAACGGGCCCT
TGGCATCGACGAGTGGGAGCATGAGGTGATGATGCGCGAGCAATCCCAAG
CTGCGGAGACGAGATCCCACTCTTATCCTCAGGTGCATGGGCAGTCCTGT
CGAAGTGATGATTTCGAGGGAGACCGTGTTGTTCGAACTCGGAGGAGGTT
GCTCAGCCCTGCTATGATTGAGCTTGTCGTTAAAGGGGAGGAGTCAGGAA
ACAATGACTGCCAGAGGGGGAAGATTGGGGCGTTGCGGAGAGAACTCCGA
CAGCTGAAGGAGGAGATTGAGAATAGTATGCACATTTAGATAGTAAAGTC
TACTTACTACTCTTGGTTGTCTGGTAATTAGCACAATTGAAAACAG back to topCoding sequence (CDS) from alignment at ch7:4285346..4287241+ >KJC3_010763-T1 ID=KJC3_010763-T1|Name=KJC3_010763-T1|organism=Aspergillus niger KJC3|type=CDS|length=1635bp|location=Sequence derived from alignment at ch7:4285346..4287241+ (Aspergillus niger KJC3)
ATGTCCACCCAGCCCCCATCACCACATGTAGGGGTCATTGTGAATCCGTC
TGCGCGCCGTGCTGCCTGCGACCAGTGTCACACCCAAAAGCTGCGTTGTA
CCAAGCTGGAAGACTGCACGGTGTGCGTTCGATGTCAGCGTCTGAACCGG
CAATGCATTTGGAGTCCTCCATCGCGGAGTGGCCGTCCGGCAAGGACTAC
TGCCAAGGAAACGCTGATGAGGCGTTCTGGTCGCTCTGAACTTACTGCGC
GGGAGAAGCATCGCAAACGATCGTCTAATATTCTAGACATGACACCAGAA
GAGAGCGGTCACTCGGACGGTGCGCGAGAGCATGTTCACTCCAACCCTGG
CAAGACTCTCACTCCCCCTTCTCCTTCTCCTCCTGTCGAAATAGCAGAGG
TACCGCCGTCATCAAGGCCTCCTTCCAGTGCAGAATGGAACATGTCCGAT
ATTCTCACCTTTCCAAGCCCGCGTGATAGCTCACGGGAGAATCTCTTCCC
CCCTTGGTGGGTATCAGATAGCGTTGTTCCTTCGATGCCCAATTTGACCG
AGTATTTCCAACTGCCTGTCAATGGATCAGCAAGCCCGGGCGATCAACCC
GGAATCCCCGAAGATAGAAGCGCACCCTCAGGACTCGAGTCTCTGCGCGA
CATTACTCGAGAGCTCTCCAACGTCAACCTGTCGTTATTGGACCTCGAGC
AATCCCTCCACGCCGAGCCATGGGGTCCGATGTTCGCATCTCCAGCCGCC
GTGATCACCAAACTAAGCGCCTGTGGCAGCGGTGACCAGCTGGACGGCAC
GCTCGCTCACGGGTATCCATTAATCGAAATATTCAAGCATACACAGCGCT
TCATCGACATTGCAAAGCAAACAAGCGTTTATTTCGCATCACTGCCCACC
ACGTCTGCATCAACGTCGACCTCGTCCTCCACAGCCCAGCCACCATCACA
CCCAGACAGCAACGACACCTCAAGCCAGGGGTCATCTCCATTCTCCCGTC
CAGGAGACGGGCATCTTCCGTACACTGCGTCTTCACCCAGCACGACCCGA
GGAGACCGACTAGTCTGCACAGCAAGCAGCTGCGATTCACCCACCGCGCT
TCTCTTCACTGCTGGCTACGCGCGGATTCTCGACATTTACCTGACCGTCC
TCACACAGACGTCGAATTTTGTTCACGCACTCTCCATGCAGTCGAGGTCC
GGGGGCCCGGACTATCGCCAACGAATGCACCCGGTTATCCCACCGTTGCA
GTGGGGTGGATTCCGGCCCGCAAATTACGGTGCCTTGCAGATCTTAATGA
TCATCCAGGTGATCTCCTATCTCCTCACAGAGGTTGAACGGGCCCTTGGC
ATCGACGAGTGGGAGCATGAGGTGATGATGCGCGAGCAATCCCAAGCTGC
GGAGACGAGATCCCACTCTTATCCTCAGGTGCATGGGCAGTCCTGTCGAA
GTGATGATTTCGAGGGAGACCGTGTTGTTCGAACTCGGAGGAGGTTGCTC
AGCCCTGCTATGATTGAGCTTGTCGTTAAAGGGGAGGAGTCAGGAAACAA
TGACTGCCAGAGGGGGAAGATTGGGGCGTTGCGGAGAGAACTCCGACAGC
TGAAGGAGGAGATTGAGAATAGTATGCACATTTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010763-T1.utr5p1 | KJC3_010763-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_010763-T1.utr3p1 | KJC3_010763-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:4285346..4287241 + |
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