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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:4990624..4991977+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011017-T1 ID=KJC3_011017-T1|Name=KJC3_011017-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1354bp|location=Sequence derived from alignment at ch7:4990624..4991977+ (Aspergillus niger KJC3)
GACACATTTCAGCCGCCCGACTGTATTCGTCGACGTTGAAGGATCACCAA
CGACACCGTCCGCCACCTACACGTATCCCTCCCTCGGCAACAGGTGCATA
CGTCGACCAAAATGTCTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCT
GCGGCCTTCCAGGTCCTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGT
GAAGCTGTTCAACAAGTGGAGCTACGAGGATGTTGAGATCAGGGACATCT
CCTTGACGTAGGTGCTTCCCAATCCATCGCGATTTTGATTGTTCTACGAG
CATGGGTTTATGTCGACCGGTGGAAAAAACGCCATTATCTGTTGGAAGAC
AGTGGACTCGGCATGCAGGGAGGAAAACGCACGACAATTCGGGATATCTG
CGAAGGGAATCACGATGGAAAATTTTTTTGCGAAATGGCACAGAAACGAG
ATATGCTGACTCGGCTTCACGTTCAATAGCGACTACGTCCAGATCCGCTC
CCCTGTCTACCTTCCTCACTCCGCTGGCCGTTATGCCGCCAAGCGTTTCC
GCAAGGCTCAGTGCCCCATCATCGAGCGCCTGACCAACTCCCTCATGATG
AACGGCCGCAACAACGGAAAGAAGCTCATGGCTGTCCGCATCGTTGCCCA
CGCCTTCGAGATCGTACGTCACCTATTTTCTGCCCCCATTGCCTTCCGCA
CGCAGAACGGCTAGGGTCCGCAAAATCCCAGAACCAGACGCAGAAAGCTG
ACCGGGTAATCTTTTCTAGATCCACATCATGACCGACCAGAACCCTCTCC
AGGTCGCCGTTGACGCCATTGTCAACTGCGGTCCTCGCGAAGACAGCACC
CGTATCGGTTCCGCTGGTACCGTCCGTCGTCAGGCCGTCGATGTGTCTCC
TCTCCGCCGTGTCAACCAGGCTATTGCCCTCCTGACCATCGGTGCTCGCG
AGGCCTCTTTCCGTAACATCAAGAGCATTGCTGAGTGCCTGGCTGAAGAG
CTCATCAACGCCGCCAAGGGTTCCTCCAACTCCTATGCCATCAAGAAGAA
GGACGAGCTCGAGCGTGTTGCCAAGTCCAACCGGTAAAGTGGGAATTTTG
GGCGTATTCTCCGTTTGGTCCTGGTTTTGCGTGTACTGGAGTGGACGGGG
GGTTTATTAGGATTCAGTCGATTTGCATGCATCTGCGCGACTGTACATAC
CTGAAAACAGTCACGGGAGGGAGCGAGATCCTAAAAATGAGAGAATCGGA
CGGCTTTCTTCTACAGTAGTTGAGATGCGATCATGAAGACCTCTGGCTTG
TGAAGTCAATACCTTTATCTATTTTTTTACACGAAAAAGATTTCCCTGTT
TCAA back to topCoding sequence (CDS) from alignment at ch7:4990624..4991977+ >KJC3_011017-T1 ID=KJC3_011017-T1|Name=KJC3_011017-T1|organism=Aspergillus niger KJC3|type=CDS|length=1944bp|location=Sequence derived from alignment at ch7:4990624..4991977+ (Aspergillus niger KJC3)
ATGTCTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCTGCGGCCTTCCA
GGTCCTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGTGAAGCTGTTCA
ACAAGTGGAGCTACGAGGATGTTGAGATCAGGGACATCTCCTTGACCGAC
TACGTCCAGATCCGCTCCCCTGTCTACCTTCCTCACTCCGCTGGCCGTTA
TGCCGCCAAGCGTTTCCGCAAGGCTCAGTGCCCCATCATCGAGCGCCTGA
CCAACTCCCTCATGATGAACGGCCGCAACAACGGAAAGAAGCTCATGGCT
GTCCGCATCGTTGCCCACGCCTTCGAGATCATCCACATCATGACCGACCA
GAACCCTCTCCAGGTCGCCGTTGACGCCATTGTCAACTGCGGTCCTCGCG
AAGACAGCACCCGTATCGGTTCCGCTGGTACCGTCCGTCGTCAGGCCGTC
GATGTGTCTCCTCTCCGCCGTGTCAACCAGGCTATTGCCCTCCTGACCAT
CGGTGCTCGCGAGGCCTCTTTCCGTAACATCAAGAGCATTGCTGAGTGCC
TGGCTGAAGAGCTCATCAACGCCGCCAAGGGTTCCTCCAACTCCTATGCC
ATCAAGAAGAAGGACGAGCTCGAGCGTGTTGCCAAGTCCAACCGGTAAAT
GTCTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCTGCGGCCTTCCAGG
TCCTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGTGAAGCTGTTCAAC
AAGTGGAGCTACGAGGATGTTGAGATCAGGGACATCTCCTTGACCGACTA
CGTCCAGATCCGCTCCCCTGTCTACCTTCCTCACTCCGCTGGCCGTTATG
CCGCCAAGCGTTTCCGCAAGGCTCAGTGCCCCATCATCGAGCGCCTGACC
AACTCCCTCATGATGAACGGCCGCAACAACGGAAAGAAGCTCATGGCTGT
CCGCATCGTTGCCCACGCCTTCGAGATCATCCACATCATGACCGACCAGA
ACCCTCTCCAGGTCGCCGTTGACGCCATTGTCAACTGCGGTCCTCGCGAA
GACAGCACCCGTATCGGTTCCGCTGGTACCGTCCGTCGTCAGGCCGTCGA
TGTGTCTCCTCTCCGCCGTGTCAACCAGGCTATTGCCCTCCTGACCATCG
GTGCTCGCGAGGCCTCTTTCCGTAACATCAAGAGCATTGCTGAGTGCCTG
GCTGAAGAGCTCATCAACGCCGCCAAGGGTTCCTCCAACTCCTATGCCAT
CAAGAAGAAGGACGAGCTCGAGCGTGTTGCCAAGTCCAACCGGTAAATGT
CTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCTGCGGCCTTCCAGGTC
CTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGTGAAGCTGTTCAACAA
GTGGAGCTACGAGGATGTTGAGATCAGGGACATCTCCTTGACCGACTACG
TCCAGATCCGCTCCCCTGTCTACCTTCCTCACTCCGCTGGCCGTTATGCC
GCCAAGCGTTTCCGCAAGGCTCAGTGCCCCATCATCGAGCGCCTGACCAA
CTCCCTCATGATGAACGGCCGCAACAACGGAAAGAAGCTCATGGCTGTCC
GCATCGTTGCCCACGCCTTCGAGATCATCCACATCATGACCGACCAGAAC
CCTCTCCAGGTCGCCGTTGACGCCATTGTCAACTGCGGTCCTCGCGAAGA
CAGCACCCGTATCGGTTCCGCTGGTACCGTCCGTCGTCAGGCCGTCGATG
TGTCTCCTCTCCGCCGTGTCAACCAGGCTATTGCCCTCCTGACCATCGGT
GCTCGCGAGGCCTCTTTCCGTAACATCAAGAGCATTGCTGAGTGCCTGGC
TGAAGAGCTCATCAACGCCGCCAAGGGTTCCTCCAACTCCTATGCCATCA
AGAAGAAGGACGAGCTCGAGCGTGTTGCCAAGTCCAACCGGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0015935 | small ribosomal subunit |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0003735 | structural constituent of ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011017-T1.utr5p1 | KJC3_011017-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011017-T1.utr3p1 | KJC3_011017-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_7.12 |
| DBxref | InterPro:IPR020606 |
| DBxref | InterPro:IPR005716 |
| DBxref | InterPro:IPR036823 |
| DBxref | InterPro:IPR023798 |
| DBxref | InterPro:IPR000235 |
| DBxref | PFAM:PF00177 |
| Product | ribosomal protein S5 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:4990624..4991977 + |
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