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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:5104170..5106226+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011054-T1 ID=KJC3_011054-T1|Name=KJC3_011054-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2057bp|location=Sequence derived from alignment at ch7:5104170..5106226+ (Aspergillus niger KJC3)
GACGCGATCACCTACGTACCCCTTATCATTTAGTACGATCAAAACTGATT
GAATCACAGCTTATTGAGCAGAATGTTATCTCTACAAAGTTGGCAACGGC
GTGGAATCCGGCTGTGGATGCCGAGGATCACGCATTGCGGGGTCCTTACG
GCGCTGACAAACCCTTATCGGCCCGGACATCGGTAGTCAAGGTCTAACCC
CACGCACTTTGTGCCTTCCACATGCCTCCTTGGCCGTGGAATCTACGTTC
AGCCGGTCGTCTGCGGTCGTGGAATTAAGCGTCGGTCAACCTGGCCCGGA
TGGAGTGAACACCTGCGCGCCCAACTAACGCAATGTCAGGACAAAAAAGT
GTCCTTGCCATCCTCATGCGACGCTCCGTCTTCTCTACCGTTTCCTTTGC
TTTCAAGCAACCTGTCAAGTTTCAGTAAGTCCAGGAGTCTCCCTATCCCC
GACGGTCATCGATCCACGGGGGGTCGGTGCCGGCGACCCCACGGTTAACC
CTTGCGCATACTAACATCAGGCAGTAGCTGCAGGATCCCATCTCGTCGCC
TAAACCTCTACAGCCCCTCTCGAGCGTTTAGCCAAACATCCACCATGTTC
AAAGTCGGTGACGATTTTGAAAAGAAACAAGCCTCCCGGCCAGAGTTCAA
GCGTGACGTCCCCGTCACTTTCTCGCAGCCACCGAACCCCAGCTGGAAAC
AGGGAGAGGGCGCCAACGATGGCGGTGAGAGCTTGAAAAAAAACCACATC
GAGATCGACCCTTACGAAGAAGGCCGACCGGCCGCCTCCAACTATAAGCT
GTTGATCTCGGGCATAGTCCCTCGTCCGATTGCGCTCATTAGCACAAAGT
CCAAAGATGGAAAGACGACAAACTTGGCACCGTTCAGTTATTCGAATGTC
ATTAACCATGACCCTCCGCTCTTCACGGTCGGAATTGTTGGCTCCCTGGA
CAAGGCCAAAGACACACTGAAGAACCTGGCGGAGACGGAGGAGTGTGTGA
TCAACATCATCTCGGAGCATTTTGTCGAAGCTGCCAATGCGACGGCCATC
AACGCTCCCTATGGAGTGTCCGAATGGGAAGTCTCCGGGCTCACCCAAGC
ACCCAGTGCCGTTGTTCAGGCGGCCCGTGTGAAAGAGTCCATCCTGGCGA
TCGAAGGCAAGCTGGTGGAAACCAAGGAGTTCGAGAGCCGGTCTACTCCT
GGCAAGAAATCCGGAGTGTTGGCAATAATCGAGGGTGTTCGTTTCTGGGT
GAGAGATGATGCGATCAACGAAGACAAGAGCATTGTCGATCTGAAAGTGC
TGAAGCCTATTAGTCGGCTGGGAGGCATTTCGTACGGGCGGACCACCGAC
GCAATCGAAATTCCAAGACCGCAGTTCTAGATTCGGCTTAGATCTTGGCC
GTTTCGATGAACTAGTGATTGTGGTGCCTCGTTTCGAGACAGGGATGGGC
CGTTGAAAGCTCCGTATTGCCTCGGTTCATCGTATACACTAGAATAGTTA
CCTCGGATAGTTAGAAGATAGATTTGTTCAGCTAGAGAGTTTATAATAGA
TCGTGAAACTCAAAAGCCATCATAGAGAAGCATCACCGCGATGCGCTCGT
CAGCATCGCAAATTGTAGAAATAACCGAAGCATAGCAGATCGGAGAAGAG
GCCGACCGGCGGTTGAAGCGTGGGGATGGGAAAGTGGATACGTGCCATTT
TAAGGTAGGAGAAACTCCGGGCCTCCGGACGGAGAAAATGGAGGAGAGAG
TCCACTTTTTCCATCCCCAGACGGAGTCCAGACTCCATGAGTCGAGGCGA
TGAAGATCCAGCTGCTTGGGACTTGGAACAACAATAGAAACAAGGCTTCT
GGGATGTTTCTCCTTGGAACGGGGGTTTATCGTATCGCTCATTCCAACCT
TCCTGAAAGGGTATAACTTCTGAGACTGACTCTGACTCGCTCAGAGCAGT
TTCTCGTGTGCAGTTCTCCCTTCCACTATGGTACGACGGTGCACTAGTCG
TCTAGTCGGTACGACACGGTAGCTGGATCCAGCCCAGTGCCAGTTGCAGT
CCAGTCA back to topCoding sequence (CDS) from alignment at ch7:5104170..5106226+ >KJC3_011054-T1 ID=KJC3_011054-T1|Name=KJC3_011054-T1|organism=Aspergillus niger KJC3|type=CDS|length=1896bp|location=Sequence derived from alignment at ch7:5104170..5106226+ (Aspergillus niger KJC3)
ATGTCAGGACAAAAAAGTGTCCTTGCCATCCTCATGCGACGCTCCGTCTT
CTCTACCGTTTCCTTTGCTTTCAAGCAACCTGTCAAGTTTCATAGCTGCA
GGATCCCATCTCGTCGCCTAAACCTCTACAGCCCCTCTCGAGCGTTTAGC
CAAACATCCACCATGTTCAAAGTCGGTGACGATTTTGAAAAGAAACAAGC
CTCCCGGCCAGAGTTCAAGCGTGACGTCCCCGTCACTTTCTCGCAGCCAC
CGAACCCCAGCTGGAAACAGGGAGAGGGCGCCAACGATGGCGGTGAGAGC
TTGAAAAAAAACCACATCGAGATCGACCCTTACGAAGAAGGCCGACCGGC
CGCCTCCAACTATAAGCTGTTGATCTCGGGCATAGTCCCTCGTCCGATTG
CGCTCATTAGCACAAAGTCCAAAGATGGAAAGACGACAAACTTGGCACCG
TTCAGTTATTCGAATGTCATTAACCATGACCCTCCGCTCTTCACGGTCGG
AATTGTTGGCTCCCTGGACAAGGCCAAAGACACACTGAAGAACCTGGCGG
AGACGGAGGAGTGTGTGATCAACATCATCTCGGAGCATTTTGTCGAAGCT
GCCAATGCGACGGCCATCAACGCTCCCTATGGAGTGTCCGAATGGGAAGT
CTCCGGGCTCACCCAAGCACCCAGTGCCGTTGTTCAGGCGGCCCGTGTGA
AAGAGTCCATCCTGGCGATCGAAGGCAAGCTGGTGGAAACCAAGGAGTTC
GAGAGCCGGTCTACTCCTGGCAAGAAATCCGGAGTGTTGGCAATAATCGA
GGGTGTTCGTTTCTGGGTGAGAGATGATGCGATCAACGAAGACAAGAGCA
TTGTCGATCTGAAAGTGCTGAAGCCTATTAGTCGGCTGGGAGGCATTTCG
TACGGGCGGACCACCGACGCAATCGAAATTCCAAGACCGCAGTTCTAGAT
GTCAGGACAAAAAAGTGTCCTTGCCATCCTCATGCGACGCTCCGTCTTCT
CTACCGTTTCCTTTGCTTTCAAGCAACCTGTCAAGTTTCATAGCTGCAGG
ATCCCATCTCGTCGCCTAAACCTCTACAGCCCCTCTCGAGCGTTTAGCCA
AACATCCACCATGTTCAAAGTCGGTGACGATTTTGAAAAGAAACAAGCCT
CCCGGCCAGAGTTCAAGCGTGACGTCCCCGTCACTTTCTCGCAGCCACCG
AACCCCAGCTGGAAACAGGGAGAGGGCGCCAACGATGGCGGTGAGAGCTT
GAAAAAAAACCACATCGAGATCGACCCTTACGAAGAAGGCCGACCGGCCG
CCTCCAACTATAAGCTGTTGATCTCGGGCATAGTCCCTCGTCCGATTGCG
CTCATTAGCACAAAGTCCAAAGATGGAAAGACGACAAACTTGGCACCGTT
CAGTTATTCGAATGTCATTAACCATGACCCTCCGCTCTTCACGGTCGGAA
TTGTTGGCTCCCTGGACAAGGCCAAAGACACACTGAAGAACCTGGCGGAG
ACGGAGGAGTGTGTGATCAACATCATCTCGGAGCATTTTGTCGAAGCTGC
CAATGCGACGGCCATCAACGCTCCCTATGGAGTGTCCGAATGGGAAGTCT
CCGGGCTCACCCAAGCACCCAGTGCCGTTGTTCAGGCGGCCCGTGTGAAA
GAGTCCATCCTGGCGATCGAAGGCAAGCTGGTGGAAACCAAGGAGTTCGA
GAGCCGGTCTACTCCTGGCAAGAAATCCGGAGTGTTGGCAATAATCGAGG
GTGTTCGTTTCTGGGTGAGAGATGATGCGATCAACGAAGACAAGAGCATT
GTCGATCTGAAAGTGCTGAAGCCTATTAGTCGGCTGGGAGGCATTTCGTA
CGGGCGGACCACCGACGCAATCGAAATTCCAAGACCGCAGTTCTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0010181 | FMN binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011054-T1.utr5p1 | KJC3_011054-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011054-T1.utr3p1 | KJC3_011054-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR012349 |
| DBxref | InterPro:IPR002563 |
| DBxref | PFAM:PF01613 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:5104170..5106226 + |
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