You are here

Home

KJC3_011060-T1, KJC3_011060-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011060-T1
Unique NameKJC3_011060-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch7:5121769..5123042-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011060-T1 ID=KJC3_011060-T1|Name=KJC3_011060-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1274bp|location=Sequence derived from alignment at ch7:5121769..5123042- (Aspergillus niger KJC3)
CATCATCTACTAATCTCTCCATCTCAACACCAACACCAACAATCAACCCA
CCACTCCTCCCCTCACTTCCATAGCGCCATGATCCCTTACCCCAATTAAT
TCCCCCCTCTCACTTCTTCAACCATCTCCACTCCATTTCCGATAACCATG
CTCCACTTCCGCACGGAAGGCTTCAACGGCTGCGCAGTCAAGTACTCACC
CTTCTTCGATAACCGCCTCGCCGTCGCCTCATCCGCCAATTTCGGCCTAG
TCGGCAATGGCCGTCTCTACATTCTTGAACTGACTCCGAACGGAATAGTT
CCCTACAAATGGTATCCCTTCCTCCATCCCCCACCTATCCCCAACCAAAC
TAACCAACCCACCAAAAACCCAGGTTCACAACCCAAGACTCCCTCTACGA
CCTCGCCTGGTCCGAAATACACGAAAACCAAGTTCTAACCGCCTCCGGCG
ACGGAAGCATCAAGCTCTTCGACACGGAGGTCGCCGACTTCCCAATTCAA
AACTGGAAAGAGCACAACCGCGAAGTCTTCAGCGTGCACTGGAACCTCGT
CGCGAAGGACCGTTTCTGCAGTAGTAGTTGGGACGGGACAGTGCGCGTGT
GGACGCCCAATCGGCCGCATTCCCTCCTCACTCTGCCGACGCATAGCTGC
ACGTACAGCGCGGCTTTTTCTCCGCATTCGCCAGATATTTTGTCGTGTGT
GTCATCGGATTCGTATCTACGGGTGTTTGATCTACGGACGCCGGCGTCGG
CGTCGAATCATTTGACTTTGCAGGTGCCGATTCATGGAGGAGGTGGTGGA
GGGGTAGTGCCGGGTGGGGGACCGATGGCGGCGACGGCGCCGGCGGAGGC
GTTGACAATGGATTGGAACAAGTATCGGCCGTCGACGATAGCTACGGCGG
GGGTGGATCGGACGATTCGCACGTTTGATATTCGGGCGCCCGGGCAGGGA
CCGCAGACGGTGATGCTGGGACATGAGTATGCGGTTAGGAAGGTGGCGTG
GTCGCCGCATTTGTCGGATGTGTTGTTGAGTGCCAGTTATGATATGACGT
GTCGGGCTTGGAGTGATCAGACACCGCCGGGGGCGGTTGGCGATGTCGAT
GTGATGCGGGCTGGGCCGGGGCCGAATATGGGGGTTGAGTTGGGGAGGAT
GGGCCGGCATACAGAGTTTGTGACGGGGGTGGATTGGTGTTTGTTTGGGA
GTGAGGGATGGTGTGCGAGTGTGGGATGGGATGAGAGTTTGTATGTGTGG
GATGTGAGGGCGGTGATGGGGTAA
back to top

Coding sequence (CDS) from alignment at ch7:5121769..5123042-

>KJC3_011060-T1 ID=KJC3_011060-T1|Name=KJC3_011060-T1|organism=Aspergillus niger KJC3|type=CDS|length=2130bp|location=Sequence derived from alignment at ch7:5121769..5123042- (Aspergillus niger KJC3)
GTTCACAACCCAAGACTCCCTCTACGACCTCGCCTGGTCCGAAATACACG
AAAACCAAGTTCTAACCGCCTCCGGCGACGGAAGCATCAAGCTCTTCGAC
ACGGAGGTCGCCGACTTCCCAATTCAAAACTGGAAAGAGCACAACCGCGA
AGTCTTCAGCGTGCACTGGAACCTCGTCGCGAAGGACCGTTTCTGCAGTA
GTAGTTGGGACGGGACAGTGCGCGTGTGGACGCCCAATCGGCCGCATTCC
CTCCTCACTCTGCCGACGCATAGCTGCACGTACAGCGCGGCTTTTTCTCC
GCATTCGCCAGATATTTTGTCGTGTGTGTCATCGGATTCGTATCTACGGG
TGTTTGATCTACGGACGCCGGCGTCGGCGTCGAATCATTTGACTTTGCAG
GTGCCGATTCATGGAGGAGGTGGTGGAGGGGTAGTGCCGGGTGGGGGACC
GATGGCGGCGACGGCGCCGGCGGAGGCGTTGACAATGGATTGGAACAAGT
ATCGGCCGTCGACGATAGCTACGGCGGGGGTGGATCGGACGATTCGCACG
TTTGATATTCGGGCGCCCGGGCAGGGACCGCAGACGGTGATGCTGGGACA
TGAGTATGCGGTTAGGAAGGTGGCGTGGTCGCCGCATTTGTCGGATGTGT
TGTTGAGTGCCAGTTATGATATGACGTGTCGGGCTTGGAGTGATCAGACA
CCGCCGGGGGCGGTTGGCGATGTCGATGTGATGCGGGCTGGGCCGGGGCC
GAATATGGGGGTTGAGTTGGGGAGGATGGGCCGGCATACAGAGTTTGTGA
CGGGGGTGGATTGGTGTTTGTTTGGGAGTGAGGGATGGTGTGCGAGTGTG
GGATGGGATGAGAGTTTGTATGTGTGGGATGTGAGGGCGGTGATGGGGTA
AATGCTCCACTTCCGCACGGAAGGCTTCAACGGCTGCGCAGTCAAGTACT
CACCCTTCTTCGATAACCGCCTCGCCGTCGCCTCATCCGCCAATTTCGGC
CTAGTCGGCAATGGCCGTCTCTACATTCTTGAACTGACTCCGAACGGAAT
AGTTCCCTACAAATGGTTCACAACCCAAGACTCCCTCTACGACCTCGCCT
GGTCCGAAATACACGAAAACCAAGTTCTAACCGCCTCCGGCGACGGAAGC
ATCAAGCTCTTCGACACGGAGGTCGCCGACTTCCCAATTCAAAACTGGAA
AGAGCACAACCGCGAAGTCTTCAGCGTGCACTGGAACCTCGTCGCGAAGG
ACCGTTTCTGCAGTAGTAGTTGGGACGGGACAGTGCGCGTGTGGACGCCC
AATCGGCCGCATTCCCTCCTCACTCTGCCGACGCATAGCTGCACGTACAG
CGCGGCTTTTTCTCCGCATTCGCCAGATATTTTGTCGTGTGTGTCATCGG
ATTCGTATCTACGGGTGTTTGATCTACGGACGCCGGCGTCGGCGTCGAAT
CATTTGACTTTGCAGGTGCCGATTCATGGAGGAGGTGGTGGAGGGGTAGT
GCCGGGTGGGGGACCGATGGCGGCGACGGCGCCGGCGGAGGCGTTGACAA
TGGATTGGAACAAGTATCGGCCGTCGACGATAGCTACGGCGGGGGTGGAT
CGGACGATTCGCACGTTTGATATTCGGGCGCCCGGGCAGGGACCGCAGAC
GGTGATGCTGGGACATGAGTATGCGGTTAGGAAGGTGGCGTGGTCGCCGC
ATTTGTCGGATGTGTTGTTGAGTGCCAGTTATGATATGACGTGTCGGGCT
TGGAGTGATCAGACACCGCCGGGGGCGGTTGGCGATGTCGATGTGATGCG
GGCTGGGCCGGGGCCGAATATGGGGGTTGAGTTGGGGAGGATGGGCCGGC
ATACAGAGTTTGTGACGGGGGTGGATTGGTGTTTGTTTGGGAGTGAGGGA
TGGTGTGCGAGTGTGGGATGGGATGAGAGTTTGTATGTGTGGGATGTGAG
GGCGGTGATGGGGTAAATGCTCCACTTCCGCACGGAAGGCTTCAACGGCT
GCGCAGTCAAGTACTCACCCTTCTTCGATAACCGCCTCGCCGTCGCCTCA
TCCGCCAATTTCGGCCTAGTCGGCAATGGCCGTCTCTACATTCTTGAACT
GACTCCGAACGGAATAGTTCCCTACAAATG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_011060KJC3_011060Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011060-T1KJC3_011060-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011060-T1.cdsKJC3_011060-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011060-T1.exon2KJC3_011060-T1.exon2Aspergillus niger KJC3exon
KJC3_011060-T1.exon1KJC3_011060-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011060-T1.utr5p1KJC3_011060-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09262VOC
DBxrefInterPro:IPR036322
DBxrefInterPro:IPR017986
DBxrefInterPro:IPR015943
DBxrefInterPro:IPR001680
DBxrefPFAM:PF00400
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch7supercontigch7:5121769..5123042 -
Powered by Drupal