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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:5229278..5231643- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011100-T1 ID=KJC3_011100-T1|Name=KJC3_011100-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2366bp|location=Sequence derived from alignment at ch7:5229278..5231643- (Aspergillus niger KJC3)
CCCTCGTCCGCGCGGCTTCACTGTCATTGTTGCCTGTGTCTGGTCTGTGT
TCGAACTGTTTTGTTGTGTGCTCGGTTGTTCTGAACAGCTTGTGGGTGTG
AATGTGATATCGTGTTCAAGTGAGCATCCTAGCTGTTCTTCTTCGTTGCT
TGCCTCGCGTGGTTGTGGCCAGTCACATCTCGGGTTGAAAAGGACACCGT
CATCATTCCGGCTTCTGTATACTTCTCCCGCGGTCCCTCGCTGTCTGGTT
CATGCACATCACTTACTAGTTAGCACTTGTTCATATTGTCATTGTGTCAA
TTTTACTCGACTGATCCCAACTTTATCATTCTCCTCTGCTTTACGCCATT
GTTTCTCTTGCAGTGAGCATTGCGACTTCGATTATGCGCCCGTGATTGTC
TACGCCCAACATCCCTCCGCAAGGACAGAACAATCCCAGGATGACCGCGT
CTTCAGAAACCCAGTCCGCTCTGGCGGAATCTCCACAGAGCATAGTATTA
CATGTGCTATGTCCATCTTTACCTCCTCCTAACCGATTCACTCTCCACGA
CATCTCTCCATCCACCACCATCTCCACTCTCAAAGCTCGAATCGCCCAGA
CCATTCCGAGTGAACCATCCCCTGAAACTCAGAGGCTGATATACCGGGGG
AAGCCCCTTACGAACGACGCCGTGGCGCTAAATGATGTGTTAGAGTCATC
AAATGTGCGTATGATCTTATTCCTATGCCCCCTTGTAGTCGGCAGATACT
AACAGTGATACTTGACCCAGGATACCGAGTATTCCATCCACCTCGTCCTT
CCTCCTGCCCCAGTTCCCCATGCTTCAACTTCTGCCAGAGCTCCTGCTCC
AATGCCGCGGGGAGCTTCAGGTAACCCCGCGCCTCAGAGTCCATTCTCAT
CGAACCGATTCACGCCGCAACACCTGCCTCACGGACAAGAGATCAGGTAT
CGAGGTCCCGCATTGCCCGCTGTTCCCCATGAGGCAGAGATCGGACTCGC
CTTGAGGCGGAATATCGAGGCTATTCGTCGACAGATTGATATGCAGGAAC
GGGGCGGGCCGTTGGGAGGCGTCGCGGCAGGCACCGCGGGGGCTACTTCC
CACTCGACCACATCCACGACTACGACAGCTTCGTTCGCTCAGCAACCTGC
ATGGCCACACGTAACACCTGGTCTATCGCACCCAGGACATTCGTCCATCT
CATCTGATTTCACAATGGCTTCCGGCTCATCGGGAACAGCCAATGTCCAT
AGCAACCTCCCCGAAGAAGTCCGATTGCGCCTACAAATACTCAGAAATCA
GATTGCGTTTGGCGAAGAGCAACTGAACCGGGGGGTTGCGCCCCCAATGG
ACCATATAATTCGCATACGTACACAATTGTTCGCTTTGCTCGACGACCAA
TATCAGAACCCACATGCTGAGCGCGACGGCTCGATTGAATCTTTGCTCAC
TCGCGTCTTTAATATCTATACCCGCGCTGATCAGCTCCGCGTCTCACAAG
CTAGAACCATGCCCACACCTGTTCTATCTGGACCTCCCAATCCCGCACCA
GGGCAGGCTCCTCTGTACCTTCTCTCGTCACCAAACGGCTATCAAGCCCT
GGTTGCATCTCCCCGCGGTGCAGAAACGATGCAGTCTTCTCTCGATACAC
TCCGAGCCATGCACTCCCCGACCGGAGCCTCTGCGCCTCGTACAGGTGCT
CCACCGGAGATTCACAATGCGAACGCAGTTGTCATGGAGAACATTGTCCG
ACAGGCCGTACTCAACCAACGCATCGAAAACAACGGGCAATTGAGCTTCA
CACGCAATCTCCGACGCATGTGGCTATTTGTGCGCTTGTATTTCTTCTGC
TACATGTTCAGCGAACCGGGCACATGGTCTCGCGTGGTGTATGTAACCCT
AGCCGTCCTTGTCTCACTCCTGTCAGAAACCGGGATCCCACAGCAGTTGT
ACCGAATGCTTGTGGCGCCAGTGCAACGACACCTGGAAGGACTGGTTCAT
TTCGCTCCGGACGAACCGACTCCAGCACCACCTGGCACGCAGTCAACTGG
GCAAGGGAACGTTCCCACTGCTCAGCCAACCGGAATGCGACACCAGCTGC
GCCGCGTAGAACGGTCCTTGGCGCTTTTCATTGCAAGCTTGGTTCCGGGC
GTGGGCGAGAGACACGTGGAAGTGCGCAATGCCGCAGAAGCGGCCCGGAA
CGCAGAGCGTGCAAGAGAGGAAGAAGAGCGACGTCGACAGGAGGAAGAGG
CCACCAACGCAGGCACGACTGGTGAGGCTCAGGCACAGGCACAGGAGAGC
AGCGAGAACGAACAGAGAGAAACGGGTGAGAATGCACCCAACACGATACC
CCAAACTGAGAATTAG back to topCoding sequence (CDS) from alignment at ch7:5229278..5231643- >KJC3_011100-T1 ID=KJC3_011100-T1|Name=KJC3_011100-T1|organism=Aspergillus niger KJC3|type=CDS|length=3720bp|location=Sequence derived from alignment at ch7:5229278..5231643- (Aspergillus niger KJC3)
GATACCGAGTATTCCATCCACCTCGTCCTTCCTCCTGCCCCAGTTCCCCA
TGCTTCAACTTCTGCCAGAGCTCCTGCTCCAATGCCGCGGGGAGCTTCAG
GTAACCCCGCGCCTCAGAGTCCATTCTCATCGAACCGATTCACGCCGCAA
CACCTGCCTCACGGACAAGAGATCAGGTATCGAGGTCCCGCATTGCCCGC
TGTTCCCCATGAGGCAGAGATCGGACTCGCCTTGAGGCGGAATATCGAGG
CTATTCGTCGACAGATTGATATGCAGGAACGGGGCGGGCCGTTGGGAGGC
GTCGCGGCAGGCACCGCGGGGGCTACTTCCCACTCGACCACATCCACGAC
TACGACAGCTTCGTTCGCTCAGCAACCTGCATGGCCACACGTAACACCTG
GTCTATCGCACCCAGGACATTCGTCCATCTCATCTGATTTCACAATGGCT
TCCGGCTCATCGGGAACAGCCAATGTCCATAGCAACCTCCCCGAAGAAGT
CCGATTGCGCCTACAAATACTCAGAAATCAGATTGCGTTTGGCGAAGAGC
AACTGAACCGGGGGGTTGCGCCCCCAATGGACCATATAATTCGCATACGT
ACACAATTGTTCGCTTTGCTCGACGACCAATATCAGAACCCACATGCTGA
GCGCGACGGCTCGATTGAATCTTTGCTCACTCGCGTCTTTAATATCTATA
CCCGCGCTGATCAGCTCCGCGTCTCACAAGCTAGAACCATGCCCACACCT
GTTCTATCTGGACCTCCCAATCCCGCACCAGGGCAGGCTCCTCTGTACCT
TCTCTCGTCACCAAACGGCTATCAAGCCCTGGTTGCATCTCCCCGCGGTG
CAGAAACGATGCAGTCTTCTCTCGATACACTCCGAGCCATGCACTCCCCG
ACCGGAGCCTCTGCGCCTCGTACAGGTGCTCCACCGGAGATTCACAATGC
GAACGCAGTTGTCATGGAGAACATTGTCCGACAGGCCGTACTCAACCAAC
GCATCGAAAACAACGGGCAATTGAGCTTCACACGCAATCTCCGACGCATG
TGGCTATTTGTGCGCTTGTATTTCTTCTGCTACATGTTCAGCGAACCGGG
CACATGGTCTCGCGTGGTGTATGTAACCCTAGCCGTCCTTGTCTCACTCC
TGTCAGAAACCGGGATCCCACAGCAGTTGTACCGAATGCTTGTGGCGCCA
GTGCAACGACACCTGGAAGGACTGGTTCATTTCGCTCCGGACGAACCGAC
TCCAGCACCACCTGGCACGCAGTCAACTGGGCAAGGGAACGTTCCCACTG
CTCAGCCAACCGGAATGCGACACCAGCTGCGCCGCGTAGAACGGTCCTTG
GCGCTTTTCATTGCAAGCTTGGTTCCGGGCGTGGGCGAGAGACACGTGGA
AGTGCGCAATGCCGCAGAAGCGGCCCGGAACGCAGAGCGTGCAAGAGAGG
AAGAAGAGCGACGTCGACAGGAGGAAGAGGCCACCAACGCAGGCACGACT
GGTGAGGCTCAGGCACAGGCACAGGAGAGCAGCGAGAACGAACAGAGAGA
AACGGGTGAGAATGCACCCAACACGATACCCCAAACTGAGAATTAGATGA
CCGCGTCTTCAGAAACCCAGTCCGCTCTGGCGGAATCTCCACAGAGCATA
GTATTACATGTGCTATGTCCATCTTTACCTCCTCCTAACCGATTCACTCT
CCACGACATCTCTCCATCCACCACCATCTCCACTCTCAAAGCTCGAATCG
CCCAGACCATTCCGAGTGAACCATCCCCTGAAACTCAGAGGCTGATATAC
CGGGGGAAGCCCCTTACGAACGACGCCGTGGCGCTAAATGATGTGTTAGA
GTCATCAAATGATACCGAGTATTCCATCCACCTCGTCCTTCCTCCTGCCC
CAGTTCCCCATGCTTCAACTTCTGCCAGAGCTCCTGCTCCAATGCCGCGG
GGAGCTTCAGGTAACCCCGCGCCTCAGAGTCCATTCTCATCGAACCGATT
CACGCCGCAACACCTGCCTCACGGACAAGAGATCAGGTATCGAGGTCCCG
CATTGCCCGCTGTTCCCCATGAGGCAGAGATCGGACTCGCCTTGAGGCGG
AATATCGAGGCTATTCGTCGACAGATTGATATGCAGGAACGGGGCGGGCC
GTTGGGAGGCGTCGCGGCAGGCACCGCGGGGGCTACTTCCCACTCGACCA
CATCCACGACTACGACAGCTTCGTTCGCTCAGCAACCTGCATGGCCACAC
GTAACACCTGGTCTATCGCACCCAGGACATTCGTCCATCTCATCTGATTT
CACAATGGCTTCCGGCTCATCGGGAACAGCCAATGTCCATAGCAACCTCC
CCGAAGAAGTCCGATTGCGCCTACAAATACTCAGAAATCAGATTGCGTTT
GGCGAAGAGCAACTGAACCGGGGGGTTGCGCCCCCAATGGACCATATAAT
TCGCATACGTACACAATTGTTCGCTTTGCTCGACGACCAATATCAGAACC
CACATGCTGAGCGCGACGGCTCGATTGAATCTTTGCTCACTCGCGTCTTT
AATATCTATACCCGCGCTGATCAGCTCCGCGTCTCACAAGCTAGAACCAT
GCCCACACCTGTTCTATCTGGACCTCCCAATCCCGCACCAGGGCAGGCTC
CTCTGTACCTTCTCTCGTCACCAAACGGCTATCAAGCCCTGGTTGCATCT
CCCCGCGGTGCAGAAACGATGCAGTCTTCTCTCGATACACTCCGAGCCAT
GCACTCCCCGACCGGAGCCTCTGCGCCTCGTACAGGTGCTCCACCGGAGA
TTCACAATGCGAACGCAGTTGTCATGGAGAACATTGTCCGACAGGCCGTA
CTCAACCAACGCATCGAAAACAACGGGCAATTGAGCTTCACACGCAATCT
CCGACGCATGTGGCTATTTGTGCGCTTGTATTTCTTCTGCTACATGTTCA
GCGAACCGGGCACATGGTCTCGCGTGGTGTATGTAACCCTAGCCGTCCTT
GTCTCACTCCTGTCAGAAACCGGGATCCCACAGCAGTTGTACCGAATGCT
TGTGGCGCCAGTGCAACGACACCTGGAAGGACTGGTTCATTTCGCTCCGG
ACGAACCGACTCCAGCACCACCTGGCACGCAGTCAACTGGGCAAGGGAAC
GTTCCCACTGCTCAGCCAACCGGAATGCGACACCAGCTGCGCCGCGTAGA
ACGGTCCTTGGCGCTTTTCATTGCAAGCTTGGTTCCGGGCGTGGGCGAGA
GACACGTGGAAGTGCGCAATGCCGCAGAAGCGGCCCGGAACGCAGAGCGT
GCAAGAGAGGAAGAAGAGCGACGTCGACAGGAGGAAGAGGCCACCAACGC
AGGCACGACTGGTGAGGCTCAGGCACAGGCACAGGAGAGCAGCGAGAACG
AACAGAGAGAAACGGGTGAGAATGCACCCAACACGATACCCCAAACTGAG
AATTAGATGACCGCGTCTTCAGAAACCCAGTCCGCTCTGGCGGAATCTCC
ACAGAGCATAGTATTACATGTGCTATGTCCATCTTTACCTCCTCCTAACC
GATTCACTCTCCACGACATCTCTCCATCCACCACCATCTCCACTCTCAAA
GCTCGAATCGCCCAGACCATTCCGAGTGAACCATCCCCTGAAACTCAGAG
GCTGATATACCGGGGGAAGCCCCTTACGAACGACGCCGTGGCGCTAAATG
ATGTGTTAGAGTCATCAAAT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011100-T1.utr5p1 | KJC3_011100-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR029071 |
| DBxref | InterPro:IPR000626 |
| DBxref | PFAM:PF00240 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:5229278..5231643 - |
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