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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:5282996..5286189+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011116-T1 ID=KJC3_011116-T1|Name=KJC3_011116-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3194bp|location=Sequence derived from alignment at ch7:5282996..5286189+ (Aspergillus niger KJC3) AATGCAAACGATCTCGTTATTTATTCTAGTTACTTAAGTAGTAATTTCTT
TTTCTGTTTCCCTCTCTCTCTTATGATTATTCTTTTTTATTATTCGTCTT
CCCTATAATTCCTTATTCTGGCATTCTCTTTAAATTACCAAATCCACCGT
CGCGGTCCCTCGACCCGCAGCTGAAGGAGAGAAAATTGTGGCTGCAGCTC
CTCTCGTCCTTTACCGGCCGGTTGGTCCTGACCTGTTGATTGTTCCCCAA
TCCTCCGCCTCTTCTTATACTACTTAATACCTGCTAGTATTGCTGCTGCT
GCTGCTGGTCTTCCTTCAGTCCCCCCCGCCTGACGACCTTGCCTCTTTTT
GTCTTTCGTCTTCTTCTCTATACTCCTTTTGGCTTGACGCAGGGACATCA
GAGAAAAAGGAAAAGCAAAATCAAAAAGAATTACTTTTACTTACTTACCC
TCCCACCGTTTTCTCGTATTCCCCACGTGTGTATCTCTGCTGCTCTTCAC
TGGGGCTGCGGCTCGAGGTTATTTTTGGACGCCGCATTTGCTGAGCCAAC
CGTGGGCTGTAATTTCTGGCCTTCCGATCAGATTGGGTTTATCATCTTCT
GCTCTTACTTCTTATAATATCCCGGCCTGGCCCATCTCCGCATCTGGTCT
CTCCCCTCCCCCCATCTTCCTTCTGTCAAACTATCACTATTCCTATTCCT
CTTATTATTGATCCTCCTCCTTGCCTGAGACAGTTCCTGTGCTCAAGCTT
TGACTCTTTGGTGACTGTTTCATCGCTCGTCTTCTACTTACCCCACCGCA
CCTCTCTGCTCTCTCCCTCGCTCGCTCCCGTTTCTTGTCTAGCCTTCATC
GTCGCCATGGCTGGTCCCGGTGGTGGCCCTCCTCGCAAGAGCCACACCAA
GTCTCGGTTCGGCTGCAAGACATGCAAGCGGCGGCACATCCGTTGTGACG
AAACTTTCCCACAATGGTAGGTTTGTTTTTTGCCTTCTGCAAACTGCAGC
TGTGTAGAATTGCTGCTGACCATCACAGCCGGAACTGCACCAAGCACAAC
TGTCGCTGCGACTACATGGATGTTGCCACGGTTCACGACGACGCATCCTC
CATGCGCAACGTACCCGACCTGCTCATGTCCGCCGAAATCGAAATGGAGA
TCAAGAACTGGCAGTTCACAGGCGTCGCTCCGTTTGCTGAGCTGCTGCAG
TTCCCGCGTACCTGCTGGACTAAGCTCTCGCTGACTGATCTGCGCCTGAT
TCATCACATTGTTGGCCTTTCTATCGATCTCCAGCGCCGGGGTCTCGCTA
GCTGCACTATTTGGGCGCAGAAGATGCCTACGTGAGTGGTTGTTTGTTAA
GCCGCAGCTTGGCAGAGTTACTGACGTTTGTATAGTTTTCTCGCTATTGC
CATCGCTAATGATTTTGTCATGAGCGCCATCCTCACCATGTCCGCCTCCC
ACCTCGCCTGGATCACTCGCAACCAGGAGACCAAGCAACTTGCATACCAC
CACCGCGGTGTTGCCATTCAGGGCCTACATAATGCCCTGGGGGCGTTTTC
CAAGGACAACTGCGATGCAATTCTGGCTGCCTCGATTATCCTGTCGTGGC
AGGCGTCGGAATGGCAGAGCTGGGCGTCCTTGCAGCAAGGTCTTACAACG
GTAAGTATCTTTATCAGGCACGCTCATAGTGAGACTAACCCGAAGCAGGT
CTTGGGTTCCATGCATCCGATGTGGAAGCAAGAGTCCGAGTTGGCCATGT
TCTTGGAAAATCAGCGGTACCTGGGGTGCACCAACACCCCAGTTATGTCG
GGCTACCAGTTCCAAGACGAAGACCTGGCCAGCCTCGACCAAACCGTCGT
GGCACTCCAGGCCCTGCAGAAGCGGGTTGCACACAACCATGCGCACTACC
GCCGTATTGGGGAACTCCTAGAGTTTGTACGACACTTCCAGCGAGATCTC
CTCTCCCAAACCCCCGAGCAGGCCTTTGAGCGCATGCAGCCGCTGCGGCG
GTGGCTGTTCTGGCTTCCTCCTGCCATGCTGCGGCCTGAAGATGCCGACA
TCGGCTCGCTAGCCATTCTGGCCCAGTTTTTCGGGGTTGGCGTGGTCCTC
GACAGCCTCTTCCCCAACTTGGGCGGTGCCTATTTGGGTCCTCTCTCCAT
CAGTCCGATTGAAGAGATCTACCGGATGGTAGTTGCTCGGAGCACAGCCG
ATCCTTTCCACCCCGATGCGCACCTCGCACTATCCGCCATGGATCTTCCC
CGGCATATTGTCGCCAAGTACAAAAGCCGGCTTCAGTGGTCTCCGCGCAC
CTCCCTAGACCACTATTCTCCTGCACCTCCTAGTCCGTATCACAGCGTCC
ACGATTACCGCCTCGCCTCGTCCTCTCCGTCTTCCGCCTCCGCCACCTAC
GCTCCTTACACTCCGCCTCTGCAGTCCCCTCCCGAAGTGACCATTGCCAG
CCCCCCGTTTGACGTCAACGGAGCCTATGTGACGGCCCCGGCGTCGCAGG
CCTTGTATCCGAGCTCCCCACGGCTGCTCTCGGACCCTCGTGACGATCTC
TCGGATTACAGCCACGCGGGATCTCTGCAGCACTCCCCTGCGTTTCCGCC
CCCATATCTTGGCGACGTGATGTGCGGGGGACTGCCACGGGTGAACAATG
GCGGGCTGGGGCTAAATATGCAGCTGTACGAAGAAACTCCGGTGATGGTT
GGGGGGTATAACACGGCACCCGAGAGGGGATGGCACTAGGGGCAACCTTG
GAGTGATTTCATTTCTATTCCTATGTTTTACTTTTTTATCATCATCAGCT
ACGGAGCGGATACGGAAAACGGCATAAAGCGGGATCAGATGAACTGGGAT
AGGACCGCCAGGGTGTTTTGGTTTTGATTTTATTTTTTCTTTTGTCTTGG
ATTTACTTGGGATGGGCGAAATAGAGGGATGGTATTGGAAACTGAAGCTG
CTTGCTTGGCTGGTTGCTTGCTTATTCTCGTACGCTAGCGATATGAGTGA
TTATTTTGATCTGCATGCATGCATGACTTGACTGATCTGACTTGATCTGT
TTGGTTGGTTTGATTTGAAGTGGCTTTGTTACGCTCGCGTGCTGTGGAAA
GTGCGCGGGATGATGTTCCTAATGTGATGTGACGACTAACCGAATACGGT
ATATACCCTGAGATAACTAATGATGAACTACTCACTACTCAAGA back to topCoding sequence (CDS) from alignment at ch7:5282996..5286189+ >KJC3_011116-T1 ID=KJC3_011116-T1|Name=KJC3_011116-T1|organism=Aspergillus niger KJC3|type=CDS|length=6876bp|location=Sequence derived from alignment at ch7:5282996..5286189+ (Aspergillus niger KJC3) ATGGCTGGTCCCGGTGGTGGCCCTCCTCGCAAGAGCCACACCAAGTCTCG GTTCGGCTGCAAGACATGCAAGCGGCGGCACATCCGTTGTGACGAAACTT TCCCACAATGCCGGAACTGCACCAAGCACAACTGTCGCTGCGACTACATG GATGTTGCCACGGTTCACGACGACGCATCCTCCATGCGCAACGTACCCGA CCTGCTCATGTCCGCCGAAATCGAAATGGAGATCAAGAACTGGCAGTTCA CAGGCGTCGCTCCGTTTGCTGAGCTGCTGCAGTTCCCGCGTACCTGCTGG ACTAAGCTCTCGCTGACTGATCTGCGCCTGATTCATCACATTGTTGGCCT TTCTATCGATCTCCAGCGCCGGGGTCTCGCTAGCTGCACTATTTGGGCGC AGAAGATGCCTACTTTTCTCGCTATTGCCATCGCTAATGATTTTGTCATG AGCGCCATCCTCACCATGTCCGCCTCCCACCTCGCCTGGATCACTCGCAA CCAGGAGACCAAGCAACTTGCATACCACCACCGCGGTGTTGCCATTCAGG GCCTACATAATGCCCTGGGGGCGTTTTCCAAGGACAACTGCGATGCAATT CTGGCTGCCTCGATTATCCTGTCGTGGCAGGCGTCGGAATGGCAGAGCTG GGCGTCCTTGCAGCAAGGTCTTACAACGGTCTTGGGTTCCATGCATCCGA TGTGGAAGCAAGAGTCCGAGTTGGCCATGTTCTTGGAAAATCAGCGGTAC CTGGGGTGCACCAACACCCCAGTTATGTCGGGCTACCAGTTCCAAGACGA AGACCTGGCCAGCCTCGACCAAACCGTCGTGGCACTCCAGGCCCTGCAGA AGCGGGTTGCACACAACCATGCGCACTACCGCCGTATTGGGGAACTCCTA GAGTTTGTACGACACTTCCAGCGAGATCTCCTCTCCCAAACCCCCGAGCA GGCCTTTGAGCGCATGCAGCCGCTGCGGCGGTGGCTGTTCTGGCTTCCTC CTGCCATGCTGCGGCCTGAAGATGCCGACATCGGCTCGCTAGCCATTCTG GCCCAGTTTTTCGGGGTTGGCGTGGTCCTCGACAGCCTCTTCCCCAACTT GGGCGGTGCCTATTTGGGTCCTCTCTCCATCAGTCCGATTGAAGAGATCT ACCGGATGGTAGTTGCTCGGAGCACAGCCGATCCTTTCCACCCCGATGCG CACCTCGCACTATCCGCCATGGATCTTCCCCGGCATATTGTCGCCAAGTA CAAAAGCCGGCTTCAGTGGTCTCCGCGCACCTCCCTAGACCACTATTCTC CTGCACCTCCTAGTCCGTATCACAGCGTCCACGATTACCGCCTCGCCTCG TCCTCTCCGTCTTCCGCCTCCGCCACCTACGCTCCTTACACTCCGCCTCT GCAGTCCCCTCCCGAAGTGACCATTGCCAGCCCCCCGTTTGACGTCAACG GAGCCTATGTGACGGCCCCGGCGTCGCAGGCCTTGTATCCGAGCTCCCCA CGGCTGCTCTCGGACCCTCGTGACGATCTCTCGGATTACAGCCACGCGGG ATCTCTGCAGCACTCCCCTGCGTTTCCGCCCCCATATCTTGGCGACGTGA TGTGCGGGGGACTGCCACGGGTGAACAATGGCGGGCTGGGGCTAAATATG CAGCTGTACGAAGAAACTCCGGTGATGGTTGGGGGGTATAACACGGCACC CGAGAGGGGATGGCACTAGATGGCTGGTCCCGGTGGTGGCCCTCCTCGCA AGAGCCACACCAAGTCTCGGTTCGGCTGCAAGACATGCAAGCGGCGGCAC ATCCGTTGTGACGAAACTTTCCCACAATGCCGGAACTGCACCAAGCACAA CTGTCGCTGCGACTACATGGATGTTGCCACGGTTCACGACGACGCATCCT CCATGCGCAACGTACCCGACCTGCTCATGTCCGCCGAAATCGAAATGGAG ATCAAGAACTGGCAGTTCACAGGCGTCGCTCCGTTTGCTGAGCTGCTGCA GTTCCCGCGTACCTGCTGGACTAAGCTCTCGCTGACTGATCTGCGCCTGA TTCATCACATTGTTGGCCTTTCTATCGATCTCCAGCGCCGGGGTCTCGCT AGCTGCACTATTTGGGCGCAGAAGATGCCTACTTTTCTCGCTATTGCCAT CGCTAATGATTTTGTCATGAGCGCCATCCTCACCATGTCCGCCTCCCACC TCGCCTGGATCACTCGCAACCAGGAGACCAAGCAACTTGCATACCACCAC CGCGGTGTTGCCATTCAGGGCCTACATAATGCCCTGGGGGCGTTTTCCAA GGACAACTGCGATGCAATTCTGGCTGCCTCGATTATCCTGTCGTGGCAGG CGTCGGAATGGCAGAGCTGGGCGTCCTTGCAGCAAGGTCTTACAACGGTC TTGGGTTCCATGCATCCGATGTGGAAGCAAGAGTCCGAGTTGGCCATGTT CTTGGAAAATCAGCGGTACCTGGGGTGCACCAACACCCCAGTTATGTCGG GCTACCAGTTCCAAGACGAAGACCTGGCCAGCCTCGACCAAACCGTCGTG GCACTCCAGGCCCTGCAGAAGCGGGTTGCACACAACCATGCGCACTACCG CCGTATTGGGGAACTCCTAGAGTTTGTACGACACTTCCAGCGAGATCTCC TCTCCCAAACCCCCGAGCAGGCCTTTGAGCGCATGCAGCCGCTGCGGCGG TGGCTGTTCTGGCTTCCTCCTGCCATGCTGCGGCCTGAAGATGCCGACAT CGGCTCGCTAGCCATTCTGGCCCAGTTTTTCGGGGTTGGCGTGGTCCTCG ACAGCCTCTTCCCCAACTTGGGCGGTGCCTATTTGGGTCCTCTCTCCATC AGTCCGATTGAAGAGATCTACCGGATGGTAGTTGCTCGGAGCACAGCCGA TCCTTTCCACCCCGATGCGCACCTCGCACTATCCGCCATGGATCTTCCCC GGCATATTGTCGCCAAGTACAAAAGCCGGCTTCAGTGGTCTCCGCGCACC TCCCTAGACCACTATTCTCCTGCACCTCCTAGTCCGTATCACAGCGTCCA CGATTACCGCCTCGCCTCGTCCTCTCCGTCTTCCGCCTCCGCCACCTACG CTCCTTACACTCCGCCTCTGCAGTCCCCTCCCGAAGTGACCATTGCCAGC CCCCCGTTTGACGTCAACGGAGCCTATGTGACGGCCCCGGCGTCGCAGGC CTTGTATCCGAGCTCCCCACGGCTGCTCTCGGACCCTCGTGACGATCTCT CGGATTACAGCCACGCGGGATCTCTGCAGCACTCCCCTGCGTTTCCGCCC CCATATCTTGGCGACGTGATGTGCGGGGGACTGCCACGGGTGAACAATGG CGGGCTGGGGCTAAATATGCAGCTGTACGAAGAAACTCCGGTGATGGTTG GGGGGTATAACACGGCACCCGAGAGGGGATGGCACTAGATGGCTGGTCCC GGTGGTGGCCCTCCTCGCAAGAGCCACACCAAGTCTCGGTTCGGCTGCAA GACATGCAAGCGGCGGCACATCCGTTGTGACGAAACTTTCCCACAATGCC GGAACTGCACCAAGCACAACTGTCGCTGCGACTACATGGATGTTGCCACG GTTCACGACGACGCATCCTCCATGCGCAACGTACCCGACCTGCTCATGTC CGCCGAAATCGAAATGGAGATCAAGAACTGGCAGTTCACAGGCGTCGCTC CGTTTGCTGAGCTGCTGCAGTTCCCGCGTACCTGCTGGACTAAGCTCTCG CTGACTGATCTGCGCCTGATTCATCACATTGTTGGCCTTTCTATCGATCT CCAGCGCCGGGGTCTCGCTAGCTGCACTATTTGGGCGCAGAAGATGCCTA CTTTTCTCGCTATTGCCATCGCTAATGATTTTGTCATGAGCGCCATCCTC ACCATGTCCGCCTCCCACCTCGCCTGGATCACTCGCAACCAGGAGACCAA GCAACTTGCATACCACCACCGCGGTGTTGCCATTCAGGGCCTACATAATG CCCTGGGGGCGTTTTCCAAGGACAACTGCGATGCAATTCTGGCTGCCTCG ATTATCCTGTCGTGGCAGGCGTCGGAATGGCAGAGCTGGGCGTCCTTGCA GCAAGGTCTTACAACGGTCTTGGGTTCCATGCATCCGATGTGGAAGCAAG AGTCCGAGTTGGCCATGTTCTTGGAAAATCAGCGGTACCTGGGGTGCACC AACACCCCAGTTATGTCGGGCTACCAGTTCCAAGACGAAGACCTGGCCAG CCTCGACCAAACCGTCGTGGCACTCCAGGCCCTGCAGAAGCGGGTTGCAC ACAACCATGCGCACTACCGCCGTATTGGGGAACTCCTAGAGTTTGTACGA CACTTCCAGCGAGATCTCCTCTCCCAAACCCCCGAGCAGGCCTTTGAGCG CATGCAGCCGCTGCGGCGGTGGCTGTTCTGGCTTCCTCCTGCCATGCTGC GGCCTGAAGATGCCGACATCGGCTCGCTAGCCATTCTGGCCCAGTTTTTC GGGGTTGGCGTGGTCCTCGACAGCCTCTTCCCCAACTTGGGCGGTGCCTA TTTGGGTCCTCTCTCCATCAGTCCGATTGAAGAGATCTACCGGATGGTAG TTGCTCGGAGCACAGCCGATCCTTTCCACCCCGATGCGCACCTCGCACTA TCCGCCATGGATCTTCCCCGGCATATTGTCGCCAAGTACAAAAGCCGGCT TCAGTGGTCTCCGCGCACCTCCCTAGACCACTATTCTCCTGCACCTCCTA GTCCGTATCACAGCGTCCACGATTACCGCCTCGCCTCGTCCTCTCCGTCT TCCGCCTCCGCCACCTACGCTCCTTACACTCCGCCTCTGCAGTCCCCTCC CGAAGTGACCATTGCCAGCCCCCCGTTTGACGTCAACGGAGCCTATGTGA CGGCCCCGGCGTCGCAGGCCTTGTATCCGAGCTCCCCACGGCTGCTCTCG GACCCTCGTGACGATCTCTCGGATTACAGCCACGCGGGATCTCTGCAGCA CTCCCCTGCGTTTCCGCCCCCATATCTTGGCGACGTGATGTGCGGGGGAC TGCCACGGGTGAACAATGGCGGGCTGGGGCTAAATATGCAGCTGTACGAA GAAACTCCGGTGATGGTTGGGGGGTATAACACGGCACCCGAGAGGGGATG GCACTAGATGGCTGGTCCCGGTGGTGGCCCTCCTCGCAAGAGCCACACCA AGTCTCGGTTCGGCTGCAAGACATGCAAGCGGCGGCACATCCGTTGTGAC GAAACTTTCCCACAATGCCGGAACTGCACCAAGCACAACTGTCGCTGCGA CTACATGGATGTTGCCACGGTTCACGACGACGCATCCTCCATGCGCAACG TACCCGACCTGCTCATGTCCGCCGAAATCGAAATGGAGATCAAGAACTGG CAGTTCACAGGCGTCGCTCCGTTTGCTGAGCTGCTGCAGTTCCCGCGTAC CTGCTGGACTAAGCTCTCGCTGACTGATCTGCGCCTGATTCATCACATTG TTGGCCTTTCTATCGATCTCCAGCGCCGGGGTCTCGCTAGCTGCACTATT TGGGCGCAGAAGATGCCTACTTTTCTCGCTATTGCCATCGCTAATGATTT TGTCATGAGCGCCATCCTCACCATGTCCGCCTCCCACCTCGCCTGGATCA CTCGCAACCAGGAGACCAAGCAACTTGCATACCACCACCGCGGTGTTGCC ATTCAGGGCCTACATAATGCCCTGGGGGCGTTTTCCAAGGACAACTGCGA TGCAATTCTGGCTGCCTCGATTATCCTGTCGTGGCAGGCGTCGGAATGGC AGAGCTGGGCGTCCTTGCAGCAAGGTCTTACAACGGTCTTGGGTTCCATG CATCCGATGTGGAAGCAAGAGTCCGAGTTGGCCATGTTCTTGGAAAATCA GCGGTACCTGGGGTGCACCAACACCCCAGTTATGTCGGGCTACCAGTTCC AAGACGAAGACCTGGCCAGCCTCGACCAAACCGTCGTGGCACTCCAGGCC CTGCAGAAGCGGGTTGCACACAACCATGCGCACTACCGCCGTATTGGGGA ACTCCTAGAGTTTGTACGACACTTCCAGCGAGATCTCCTCTCCCAAACCC CCGAGCAGGCCTTTGAGCGCATGCAGCCGCTGCGGCGGTGGCTGTTCTGG CTTCCTCCTGCCATGCTGCGGCCTGAAGATGCCGACATCGGCTCGCTAGC CATTCTGGCCCAGTTTTTCGGGGTTGGCGTGGTCCTCGACAGCCTCTTCC CCAACTTGGGCGGTGCCTATTTGGGTCCTCTCTCCATCAGTCCGATTGAA GAGATCTACCGGATGGTAGTTGCTCGGAGCACAGCCGATCCTTTCCACCC CGATGCGCACCTCGCACTATCCGCCATGGATCTTCCCCGGCATATTGTCG CCAAGTACAAAAGCCGGCTTCAGTGGTCTCCGCGCACCTCCCTAGACCAC TATTCTCCTGCACCTCCTAGTCCGTATCACAGCGTCCACGATTACCGCCT CGCCTCGTCCTCTCCGTCTTCCGCCTCCGCCACCTACGCTCCTTACACTC CGCCTCTGCAGTCCCCTCCCGAAGTGACCATTGCCAGCCCCCCGTTTGAC GTCAACGGAGCCTATGTGACGGCCCCGGCGTCGCAGGCCTTGTATCCGAG CTCCCCACGGCTGCTCTCGGACCCTCGTGACGATCTCTCGGATTACAGCC ACGCGGGATCTCTGCAGCACTCCCCTGCGTTTCCGCCCCCATATCTTGGC GACGTGATGTGCGGGGGACTGCCACGGGTGAACAATGGCGGGCTGGGGCT AAATATGCAGCTGTACGAAGAAACTCCGGTGATGGTTGGGGGGTATAACA CGGCACCCGAGAGGGGATGGCACTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
Term | Definition |
GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
Term | Definition |
GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
Term | Definition |
GO:0008270 | zinc ion binding |
GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_011116-T1.utr5p1 | KJC3_011116-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_011116-T1.utr3p1 | KJC3_011116-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
Property Name | Value |
DBxref | InterPro:IPR036864 |
DBxref | InterPro:IPR021858 |
DBxref | InterPro:IPR001138 |
DBxref | PFAM:PF00172 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch7 | supercontig | ch7:5282996..5286189 + |
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