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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:24175..28147- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011205-T1 ID=KJC3_011205-T1|Name=KJC3_011205-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3973bp|location=Sequence derived from alignment at ch8:24175..28147- (Aspergillus niger KJC3)
CGGAGTTTCTATGAAGCCATGGAAGGTATGTTCCCGTCCCGTTCTCGCAG
AGCGGCCAAGGCATGCAGCTTCTGTCGCCGGAGGAAGGTGAGTGAGATCC
ACTGATCCACCCACGCGCGCCACCCCCGACCGTGCCATTCCGCTCACGGC
CGCTATAGTTGCGCTGCGACGAAAAGCCAACGTGCTCCAACTGTCAGGGT
TACGGCAAGGAATGCGTGTACATGACCAACCCCTCAAGGCCCAGGTGCGT
GAAATTTCGCCCGTCGGGAGAAGAGGCTGATTACCTGACCCACCTAGGCC
ATCCAAAGCCTGGATCGCTCACTTGGTGACAGAAAATGAGCAACTTCGGC
AGCGACTCGGCGAGGGAAGTGCCGGGCCGGTGCATGGAGAGCAGGCAACC
CCTGATGGAGATCTCCACCAACAGTCGGAATCCACCAAGATGGACCACCC
GCAGTCGGTCGTATCCGGCATCTTTGTCTCCGCCAACGGAGACTCCAGCT
ACCATGGCCTCACCAGTACCCTTTTTGACGGCGCCCCCGTCGGGGGCCAT
GGCTCAGCCCAACTGGCCAATCGCGCCGGTCCCGTGGAGCCCATTCAGCA
ACAACTGATGGGAGAGGCCGCTTATCAAAGTGAGTCGCTGTGCCTTCCCC
CCGTTACAGAAACCGATTGCAGACTCTAACATTGCGATGACAAAGGGCAG
CTGGAAACATTGAACTTCCAGCAAGGGAAGTTGGACTTTGATGGCGTAGA
TCCTGAGCTGGGGATGCATCTGTTGTCCCTGCATTGGAACCGCCAGCACC
ACTCCTTCCTAATAACGCATCGCCCGAGCTTCATGCGTGATATGGCCACC
AACGGGCCTTATTTCTCCAAGCTACTCCTGAATGCGATATACTTTGGGGC
GTCCAAGTTCAGTAATCGTCCCGAGGTACGTAGAGACCCGGATGATGCCC
GCACGGCTGGGTGGACCTTTCGCATGAGGGTGAGGGAGCTGCTGGGGAGT
GCCTTGGATCGGAGTGAGATCACCACCATCCAGGCACTCCTAGTCATGAC
GAGCTCTCTCTTCGCGCTGGGAGATGAACGTAGCGCCGCCTGGCTATATG
CTGGGACGGCTTTTCGGATGATCATCGATCTCGGCATGCACGTGGACGCC
ACGATGCTCCCCAACATGCGCCGACTCTCGCCAGAAGACCTGGAAATCCG
ACGGCGTGTATTCTGGGGTGCCTTTGTGGTTGACAAGATCCAATCATTAT
ACCAGGGGCGACCGGCTAGTCTCCAAAGCTTTGATACCAAAGTCCTGCTG
TCCTTCATGGACCGCTATGAGGAGCTGGAGCCCTGGCAACCCTTTGCGTA
TTCCGATGTGAAATCATACCCTGGATCCCCAGCATATAGCGTGTCGACAT
TCACATGGCTGTGTAAACTGTCGCTGGTCTTGAATGAGATCCTGAACAAA
GTTTATTCGGAGAGAAGTTCCAATCGGTCGCCTCACGACCTCATCGCTAC
TCTAAACAGACTCGATGGGCAGTTGAAAACCTGGTACGAAAGCCTTCCAG
ATCACCTGCGCTACAACAGTCCCGTGGGGGTGGTGCCGCCTCCACATGTT
CTCTCATTACTCGCTCTGTACAATGTCTTGGTTATCCTGCTTCACCGACC
GTTTGTTTCCGAGGGACATCTTTACACTGCCGATCCATCGGTGGCCAAGA
GCTCCTTTACCACCTGCACCACGGCCGCCTCCAGCATCACCCAATTACTA
CAGGCCTACGATAACACCTTTTCTATCCGGCGAGCACCGTATCTGATTTC
ATACGCCACATACGTAGCAGCGACAATCTTCGTTCGAGTCGCGGCCCAAC
GAGAGCGTGTCAGTCGGGCTCACACCAGCCTCCAGAGCTGCCTCGACATA
TTTAAGAAGAATCAAGAGACAAATTGGGCGGTGCGACGAGCTCACAATGT
GATCTTACACCTCATGGATCGCATGGGTGTTCGTTTAGATGATTGCACGA
CTGTGGTCGACGACAGTCCGAGCCGTATAGAAGCCCGATCAGACCCTTTA
ACTATCTTAGCCGAAGGACCGTTGGGACCGGCGCCTGGGATCAATCACGA
ATCTCTGCCGGACATTGAACCGTCCGAGCTGGACATTGAAATGGTTATTC
AAAGCTTCATGGGAACACAGCCTAGGCCCGCAGACGGACAGATGCGCGAA
CCCATGGATTTCTCTTTTGGACCTACGGTACCTCATTCGACCAATCCGGC
TCCTATAGCTCCCGTAGTAGGCCAGTATGAGGAGACGTACTCTTATCCCA
GGTTCGACGATATGCTGTTTGGCTTCAACGGTTCTCCGCAGGATAATGCA
TTCACGGACAATTAAGTTGTATCTACTCAATGCCAAACAACAAGTGTGAC
GAATCGATCGGAACGCCCTGCATCCGGTATTGGCAGCTTCCTCCATGTAT
TCTATATTGGGCCGGTCATAGTTTGCTCTATGTCCAGTGAACCCAGGAAA
CCACTCCATCTAAGGTCTATAAAACACACGGCCCTCGAAAAGCCGTCGAG
CCGTCCGATAAACCGCCACCCGGTCAACGTCGATCGCGCCATGCCTGTCC
ATCCCCAGGACCGTCTCCGTATGGATGACCCCGGCCGGATGGCGGATGCC
GACCGGCACAGCACCTGCAATCTGGTGGTCTCCCAGCGACATTCCATGCT
TTGGCATCTCTTTTCCTTCCTTCGCATGGGCCAAGTCCCAAGCGATGGTG
CCATGTATGATCGTCGCCGCACCGAGACACACCGCCCCCGTCAACTGCAG
ACTCGCATGGGGTTTCCCCATACTGAACGCCTTCACCTCAATGTCCACGC
CATCCACGTCACCCGTTGCGGGAGACAAAATGGCAATCTTCGGGGTACCG
CGAACCTGACCCGCAGCCTGCACATTCTCAGCAAGGCCAAACCGCACGGC
GCCATGCCTCCGAATATCCTCGATCAGCCCCAGGAAGACTGGATCCGCAG
CATCCGCGATACTGGACGAGGCTTCTACTGGCAAGGACGCTGCATCAACA
AACACAAACGGATTGGCAGCGTCAACAAGGCTAACTCGCACGGCAAGTGT
TCCAAATCCCCGGGATTGCACCGTTAGCATCTCTTGATGCATTCCGCTCG
GAAACATCTGGCCCGTCATACTACCGCACGGCTTGAGGAATGCAACTCTG
ATAGGGCTAGCTGTACCTTCAACGCCTGGAATCGCATAGTCGCCATCCTC
TCGAAATGAGCCGTCAGTGGCGACCTGGACTGTTTCAAAGATATGTTGTC
CGGTATTGGTGTTGAGAATCTTGATATTGACCTGGGGCTCAATCAGTCTA
GTTTCCCATACGTCGTCCCACTGAAAATAGGAAAGAAAACCAACCTCTTT
TTCCCCCTCAGGGATGTTAACAAGGCCCTCATCCAGTGCAAAAGGCCCCA
CCCCCGAGGCGATGTTGCCACAATTCCCGGTCACATCGATCCGTGGCTGA
TCCGGTGCCACCTGCACAAACGTATACTCGACATCGACACCGGGTCGATT
CGACCGTTCTACGATGGCGACCTTGGACGTTGTCGAAGATGCACCGCCCA
CCCCGTCAATCTGCCGAGAACTTCCCTTACTAGAGCCCATGGCAGATAGC
AAAATCGGTTCCCAGAGCGTTTTTGACGCGGGGAGATGGCGGCGATGGAG
GAATAGGCCCTTGGATGTGCCAGCGCGCATCCATACCGCCGGGAGGGATT
TCCGAACCGATTCGTTGGACCTGTACTTTGTTGTTATCGGTAGGACGGGG
ATAGGCTCAGCCCGGGTGACTGAGTATGTTTGTGTCATGATTGGCTAGAG
GTTGAGCTGTAGGGTCTTTCGCATGAACACAATACTCTGTTACCAGCAAT
CAGGTTGATATAAATGTAGTGTTTTGCTTTCTCAAATGCCGGATTTTGCT
GTTGTGCTATACCGTCAGCTTCC back to topCoding sequence (CDS) from alignment at ch8:24175..28147- >KJC3_011205-T1 ID=KJC3_011205-T1|Name=KJC3_011205-T1|organism=Aspergillus niger KJC3|type=CDS|length=6075bp|location=Sequence derived from alignment at ch8:24175..28147- (Aspergillus niger KJC3)
GGCAGCTGGAAACATTGAACTTCCAGCAAGGGAAGTTGGACTTTGATGGC
GTAGATCCTGAGCTGGGGATGCATCTGTTGTCCCTGCATTGGAACCGCCA
GCACCACTCCTTCCTAATAACGCATCGCCCGAGCTTCATGCGTGATATGG
CCACCAACGGGCCTTATTTCTCCAAGCTACTCCTGAATGCGATATACTTT
GGGGCGTCCAAGTTCAGTAATCGTCCCGAGGTACGTAGAGACCCGGATGA
TGCCCGCACGGCTGGGTGGACCTTTCGCATGAGGGTGAGGGAGCTGCTGG
GGAGTGCCTTGGATCGGAGTGAGATCACCACCATCCAGGCACTCCTAGTC
ATGACGAGCTCTCTCTTCGCGCTGGGAGATGAACGTAGCGCCGCCTGGCT
ATATGCTGGGACGGCTTTTCGGATGATCATCGATCTCGGCATGCACGTGG
ACGCCACGATGCTCCCCAACATGCGCCGACTCTCGCCAGAAGACCTGGAA
ATCCGACGGCGTGTATTCTGGGGTGCCTTTGTGGTTGACAAGATCCAATC
ATTATACCAGGGGCGACCGGCTAGTCTCCAAAGCTTTGATACCAAAGTCC
TGCTGTCCTTCATGGACCGCTATGAGGAGCTGGAGCCCTGGCAACCCTTT
GCGTATTCCGATGTGAAATCATACCCTGGATCCCCAGCATATAGCGTGTC
GACATTCACATGGCTGTGTAAACTGTCGCTGGTCTTGAATGAGATCCTGA
ACAAAGTTTATTCGGAGAGAAGTTCCAATCGGTCGCCTCACGACCTCATC
GCTACTCTAAACAGACTCGATGGGCAGTTGAAAACCTGGTACGAAAGCCT
TCCAGATCACCTGCGCTACAACAGTCCCGTGGGGGTGGTGCCGCCTCCAC
ATGTTCTCTCATTACTCGCTCTGTACAATGTCTTGGTTATCCTGCTTCAC
CGACCGTTTGTTTCCGAGGGACATCTTTACACTGCCGATCCATCGGTGGC
CAAGAGCTCCTTTACCACCTGCACCACGGCCGCCTCCAGCATCACCCAAT
TACTACAGGCCTACGATAACACCTTTTCTATCCGGCGAGCACCGTATCTG
ATTTCATACGCCACATACGTAGCAGCGACAATCTTCGTTCGAGTCGCGGC
CCAACGAGAGCGTGTCAGTCGGGCTCACACCAGCCTCCAGAGCTGCCTCG
ACATATTTAAGAAGAATCAAGAGACAAATTGGGCGGTGCGACGAGCTCAC
AATGTGATCTTACACCTCATGGATCGCATGGGTGTTCGTTTAGATGATTG
CACGACTGTGGTCGACGACAGTCCGAGCCGTATAGAAGCCCGATCAGACC
CTTTAACTATCTTAGCCGAAGGACCGTTGGGACCGGCGCCTGGGATCAAT
CACGAATCTCTGCCGGACATTGAACCGTCCGAGCTGGACATTGAAATGGT
TATTCAAAGCTTCATGGGAACACAGCCTAGGCCCGCAGACGGACAGATGC
GCGAACCCATGGATTTCTCTTTTGGACCTACGGTACCTCATTCGACCAAT
CCGGCTCCTATAGCTCCCGTAGTAGGCCAGTATGAGGAGACGTACTCTTA
TCCCAGGTTCGACGATATGCTGTTTGGCTTCAACGGTTCTCCGCAGGATA
ATGCATTCACGGACAATTAAGCCATCCAAAGCCTGGATCGCTCACTTGGT
GACAGAAAATGAGCAACTTCGGCAGCGACTCGGCGAGGGAAGTGCCGGGC
CGGTGCATGGAGAGCAGGCAACCCCTGATGGAGATCTCCACCAACAGTCG
GAATCCACCAAGATGGACCACCCGCAGTCGGTCGTATCCGGCATCTTTGT
CTCCGCCAACGGAGACTCCAGCTACCATGGCCTCACCAGTACCCTTTTTG
ACGGCGCCCCCGTCGGGGGCCATGGCTCAGCCCAACTGGCCAATCGCGCC
GGTCCCGTGGAGCCCATTCAGCAACAACTGATGGGAGAGGCCGCTTATCA
AAATGACCAACCCCTCAAGGCCCAGGGCAGCTGGAAACATTGAACTTCCA
GCAAGGGAAGTTGGACTTTGATGGCGTAGATCCTGAGCTGGGGATGCATC
TGTTGTCCCTGCATTGGAACCGCCAGCACCACTCCTTCCTAATAACGCAT
CGCCCGAGCTTCATGCGTGATATGGCCACCAACGGGCCTTATTTCTCCAA
GCTACTCCTGAATGCGATATACTTTGGGGCGTCCAAGTTCAGTAATCGTC
CCGAGGTACGTAGAGACCCGGATGATGCCCGCACGGCTGGGTGGACCTTT
CGCATGAGGGTGAGGGAGCTGCTGGGGAGTGCCTTGGATCGGAGTGAGAT
CACCACCATCCAGGCACTCCTAGTCATGACGAGCTCTCTCTTCGCGCTGG
GAGATGAACGTAGCGCCGCCTGGCTATATGCTGGGACGGCTTTTCGGATG
ATCATCGATCTCGGCATGCACGTGGACGCCACGATGCTCCCCAACATGCG
CCGACTCTCGCCAGAAGACCTGGAAATCCGACGGCGTGTATTCTGGGGTG
CCTTTGTGGTTGACAAGATCCAATCATTATACCAGGGGCGACCGGCTAGT
CTCCAAAGCTTTGATACCAAAGTCCTGCTGTCCTTCATGGACCGCTATGA
GGAGCTGGAGCCCTGGCAACCCTTTGCGTATTCCGATGTGAAATCATACC
CTGGATCCCCAGCATATAGCGTGTCGACATTCACATGGCTGTGTAAACTG
TCGCTGGTCTTGAATGAGATCCTGAACAAAGTTTATTCGGAGAGAAGTTC
CAATCGGTCGCCTCACGACCTCATCGCTACTCTAAACAGACTCGATGGGC
AGTTGAAAACCTGGTACGAAAGCCTTCCAGATCACCTGCGCTACAACAGT
CCCGTGGGGGTGGTGCCGCCTCCACATGTTCTCTCATTACTCGCTCTGTA
CAATGTCTTGGTTATCCTGCTTCACCGACCGTTTGTTTCCGAGGGACATC
TTTACACTGCCGATCCATCGGTGGCCAAGAGCTCCTTTACCACCTGCACC
ACGGCCGCCTCCAGCATCACCCAATTACTACAGGCCTACGATAACACCTT
TTCTATCCGGCGAGCACCGTATCTGATTTCATACGCCACATACGTAGCAG
CGACAATCTTCGTTCGAGTCGCGGCCCAACGAGAGCGTGTCAGTCGGGCT
CACACCAGCCTCCAGAGCTGCCTCGACATATTTAAGAAGAATCAAGAGAC
AAATTGGGCGGTGCGACGAGCTCACAATGTGATCTTACACCTCATGGATC
GCATGGGTGTTCGTTTAGATGATTGCACGACTGTGGTCGACGACAGTCCG
AGCCGTATAGAAGCCCGATCAGACCCTTTAACTATCTTAGCCGAAGGACC
GTTGGGACCGGCGCCTGGGATCAATCACGAATCTCTGCCGGACATTGAAC
CGTCCGAGCTGGACATTGAAATGGTTATTCAAAGCTTCATGGGAACACAG
CCTAGGCCCGCAGACGGACAGATGCGCGAACCCATGGATTTCTCTTTTGG
ACCTACGGTACCTCATTCGACCAATCCGGCTCCTATAGCTCCCGTAGTAG
GCCAGTATGAGGAGACGTACTCTTATCCCAGGTTCGACGATATGCTGTTT
GGCTTCAACGGTTCTCCGCAGGATAATGCATTCACGGACAATTAAGCCAT
CCAAAGCCTGGATCGCTCACTTGGTGACAGAAAATGAGCAACTTCGGCAG
CGACTCGGCGAGGGAAGTGCCGGGCCGGTGCATGGAGAGCAGGCAACCCC
TGATGGAGATCTCCACCAACAGTCGGAATCCACCAAGATGGACCACCCGC
AGTCGGTCGTATCCGGCATCTTTGTCTCCGCCAACGGAGACTCCAGCTAC
CATGGCCTCACCAGTACCCTTTTTGACGGCGCCCCCGTCGGGGGCCATGG
CTCAGCCCAACTGGCCAATCGCGCCGGTCCCGTGGAGCCCATTCAGCAAC
AACTGATGGGAGAGGCCGCTTATCAAAATGACCAACCCCTCAAGGCCCAG
GGCAGCTGGAAACATTGAACTTCCAGCAAGGGAAGTTGGACTTTGATGGC
GTAGATCCTGAGCTGGGGATGCATCTGTTGTCCCTGCATTGGAACCGCCA
GCACCACTCCTTCCTAATAACGCATCGCCCGAGCTTCATGCGTGATATGG
CCACCAACGGGCCTTATTTCTCCAAGCTACTCCTGAATGCGATATACTTT
GGGGCGTCCAAGTTCAGTAATCGTCCCGAGGTACGTAGAGACCCGGATGA
TGCCCGCACGGCTGGGTGGACCTTTCGCATGAGGGTGAGGGAGCTGCTGG
GGAGTGCCTTGGATCGGAGTGAGATCACCACCATCCAGGCACTCCTAGTC
ATGACGAGCTCTCTCTTCGCGCTGGGAGATGAACGTAGCGCCGCCTGGCT
ATATGCTGGGACGGCTTTTCGGATGATCATCGATCTCGGCATGCACGTGG
ACGCCACGATGCTCCCCAACATGCGCCGACTCTCGCCAGAAGACCTGGAA
ATCCGACGGCGTGTATTCTGGGGTGCCTTTGTGGTTGACAAGATCCAATC
ATTATACCAGGGGCGACCGGCTAGTCTCCAAAGCTTTGATACCAAAGTCC
TGCTGTCCTTCATGGACCGCTATGAGGAGCTGGAGCCCTGGCAACCCTTT
GCGTATTCCGATGTGAAATCATACCCTGGATCCCCAGCATATAGCGTGTC
GACATTCACATGGCTGTGTAAACTGTCGCTGGTCTTGAATGAGATCCTGA
ACAAAGTTTATTCGGAGAGAAGTTCCAATCGGTCGCCTCACGACCTCATC
GCTACTCTAAACAGACTCGATGGGCAGTTGAAAACCTGGTACGAAAGCCT
TCCAGATCACCTGCGCTACAACAGTCCCGTGGGGGTGGTGCCGCCTCCAC
ATGTTCTCTCATTACTCGCTCTGTACAATGTCTTGGTTATCCTGCTTCAC
CGACCGTTTGTTTCCGAGGGACATCTTTACACTGCCGATCCATCGGTGGC
CAAGAGCTCCTTTACCACCTGCACCACGGCCGCCTCCAGCATCACCCAAT
TACTACAGGCCTACGATAACACCTTTTCTATCCGGCGAGCACCGTATCTG
ATTTCATACGCCACATACGTAGCAGCGACAATCTTCGTTCGAGTCGCGGC
CCAACGAGAGCGTGTCAGTCGGGCTCACACCAGCCTCCAGAGCTGCCTCG
ACATATTTAAGAAGAATCAAGAGACAAATTGGGCGGTGCGACGAGCTCAC
AATGTGATCTTACACCTCATGGATCGCATGGGTGTTCGTTTAGATGATTG
CACGACTGTGGTCGACGACAGTCCGAGCCGTATAGAAGCCCGATCAGACC
CTTTAACTATCTTAGCCGAAGGACCGTTGGGACCGGCGCCTGGGATCAAT
CACGAATCTCTGCCGGACATTGAACCGTCCGAGCTGGACATTGAAATGGT
TATTCAAAGCTTCATGGGAACACAGCCTAGGCCCGCAGACGGACAGATGC
GCGAACCCATGGATTTCTCTTTTGGACCTACGGTACCTCATTCGACCAAT
CCGGCTCCTATAGCTCCCGTAGTAGGCCAGTATGAGGAGACGTACTCTTA
TCCCAGGTTCGACGATATGCTGTTTGGCTTCAACGGTTCTCCGCAGGATA
ATGCATTCACGGACAATTAAGCCATCCAAAGCCTGGATCGCTCACTTGGT
GACAGAAAATGAGCAACTTCGGCAGCGACTCGGCGAGGGAAGTGCCGGGC
CGGTGCATGGAGAGCAGGCAACCCCTGATGGAGATCTCCACCAACAGTCG
GAATCCACCAAGATGGACCACCCGCAGTCGGTCGTATCCGGCATCTTTGT
CTCCGCCAACGGAGACTCCAGCTACCATGGCCTCACCAGTACCCTTTTTG
ACGGCGCCCCCGTCGGGGGCCATGGCTCAGCCCAACTGGCCAATCGCGCC
GGTCCCGTGGAGCCCATTCAGCAACAACTGATGGGAGAGGCCGCTTATCA
AAATGACCAACCCCTCAAGGCCCAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011205-T1.utr3p1 | KJC3_011205-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011205-T1.utr5p1 | KJC3_011205-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007219 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF04082 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:24175..28147 - |
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