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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:88073..89772+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011227-T1 ID=KJC3_011227-T1|Name=KJC3_011227-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1700bp|location=Sequence derived from alignment at ch8:88073..89772+ (Aspergillus niger KJC3)
CCTCACCTTAAATTTCTGCCCTGTCCCTACCATCCCCGCTCAGTGATTTG
ATCCTACCACGAAGTCAATCTGCAGAGTCACACCCGATGCGCGAGAATAC
GTCCGACAAAAGAGCAGCCGAGACGGTAGTGGCTGACCAGGAGGTGGAAA
GTGGTCCGCCGTCAGCCTACCGTCCCACGCGGTGGCAGAGCAATTTGACC
ATCCTGAGCTGCGTAAGTACACAACCGATGATCTTTCTTTTCTTCTCTTC
AACCCCACCAAAAGCTACCAATGAACGCGTCGCTAACCAGTGGTTTGTGA
CAGTATATCGCCAACTTCAGCGATGGGTTCCAAAACCAATTGGCCAATCC
CACAAATGTCATCTTCAAGAAATTGTTGGGCAAATCCGGCTACCCATCGG
AGATGCAGACGCGCATTAGCAATTCCCTGCTCATCGGTGCCATTCTGGGC
GTGGTCGTGCTGGGATACGTCTCGGACATGGCCTCCCGGCGCGCGGGTCT
TCTCTTCACCTCGGGCCTGGTCACCATCTCCACGCTGATGGCCACCCTGG
CCCTGCAGGTGCACCCTTCTCACAACATGCTCTGGTACTTTGTCATCGTC
CGTGGCATTTGTGGGTTTGGCGTGGGCGGAGAATACCCTCCCAGTGCGGC
GGCCGGCCTGGAAGAATCGGACGATGTACGTTTCCATCCCCTTCTCTTCC
CTACCGGCGCACTATCAGGCAGACCAGGACCAAGGATTTCAAGACTGTGC
AATTAACCAGAATGCTTTGTATGCAGTTTAAGCGCCGCTACCGAGGACCT
GTCTTTGTCTCCTTCACCACGCTGATGGCCACCACCGCCTCTCCCATTCT
GATGATCATCTACCTGATCTGCCTCAAGGCCACCAACAACAACCTGCCCA
TCACCTTCCATGCCATCTACAGCATTGCCACCATCTTACCCGCCATCATC
ATGGTTTTGCGATTTTTCATGACCGACTCGACCTTGTATCACCATTCCAA
CTTCAAGCGCCAGCGGAAACCCGCCCGATTCTACTGGGTGCTGGTGCGCC
GGTACTGGAAGCGGCTCTTCACCACCTCGCTGGCCTTCTTCCTCTACGAC
TTTATCAACTTCCCCAACAGCATCATGTCGAGCACCATCATCTCCTCGCT
CGTCAAGGACGGCAACATCCAGACGACCGCCATCTGGCAGGTCATTCTGG
CGGCGCTCCCCGTCCCCGGCGTCATCATCGGCGCATGGCTGACCAATTTG
ATCGGACGCCGGGGCACCGGAATGGTCGGATTCGCGGGCTACGTGGTCCT
GGGTTTCATCATCGGTGGCACCTACGCCAAGCTCTCCCAGCATATCGCGG
CCTTTGTCGTGCTCTACGGGTTGCTACAGGCCTTTGGACACCTGGGGCCC
GGCGCCACCATCGGCCTCATATCCAGTGAATCATTCCCCACCGCCATGCG
CGGCATGGGGTACAGTGTGGCCACGGCCTTTGGTCGCACGGGAGCGGCGG
TGGGCACGCAGTGTTTTACGCCCCTGCAGGATGCCGCCGGAGACAGCGCC
ACCTTCTACCTTCTGGGTGGCGTGGCGATTCTGGGCATGATTGTGTACTG
GTTCCTGCCCGAAAGCGGGAAATTGGATCTGGAGAAGGAGGATCGCGAGC
TGGAGGAGTATCTGGCTGGTCATGGGTTCACCATGGAGAAAAAATACTAA
back to topCoding sequence (CDS) from alignment at ch8:88073..89772+ >KJC3_011227-T1 ID=KJC3_011227-T1|Name=KJC3_011227-T1|organism=Aspergillus niger KJC3|type=CDS|length=4266bp|location=Sequence derived from alignment at ch8:88073..89772+ (Aspergillus niger KJC3)
ATGCGCGAGAATACGTCCGACAAAAGAGCAGCCGAGACGGTAGTGGCTGA
CCAGGAGGTGGAAAGTGGTCCGCCGTCAGCCTACCGTCCCACGCGGTGGC
AGAGCAATTTGACCATCCTGAGCTGCTATATCGCCAACTTCAGCGATGGG
TTCCAAAACCAATTGGCCAATCCCACAAATGTCATCTTCAAGAAATTGTT
GGGCAAATCCGGCTACCCATCGGAGATGCAGACGCGCATTAGCAATTCCC
TGCTCATCGGTGCCATTCTGGGCGTGGTCGTGCTGGGATACGTCTCGGAC
ATGGCCTCCCGGCGCGCGGGTCTTCTCTTCACCTCGGGCCTGGTCACCAT
CTCCACGCTGATGGCCACCCTGGCCCTGCAGGTGCACCCTTCTCACAACA
TGCTCTGGTACTTTGTCATCGTCCGTGGCATTTGTGGGTTTGGCGTGGGC
GGAGAATACCCTCCCAGTGCGGCGGCCGGCCTGGAAGAATCGGACGATTT
TAAGCGCCGCTACCGAGGACCTGTCTTTGTCTCCTTCACCACGCTGATGG
CCACCACCGCCTCTCCCATTCTGATGATCATCTACCTGATCTGCCTCAAG
GCCACCAACAACAACCTGCCCATCACCTTCCATGCCATCTACAGCATTGC
CACCATCTTACCCGCCATCATCATGGTTTTGCGATTTTTCATGACCGACT
CGACCTTGTATCACCATTCCAACTTCAAGCGCCAGCGGAAACCCGCCCGA
TTCTACTGGGTGCTGGTGCGCCGGTACTGGAAGCGGCTCTTCACCACCTC
GCTGGCCTTCTTCCTCTACGACTTTATCAACTTCCCCAACAGCATCATGT
CGAGCACCATCATCTCCTCGCTCGTCAAGGACGGCAACATCCAGACGACC
GCCATCTGGCAGGTCATTCTGGCGGCGCTCCCCGTCCCCGGCGTCATCAT
CGGCGCATGGCTGACCAATTTGATCGGACGCCGGGGCACCGGAATGGTCG
GATTCGCGGGCTACGTGGTCCTGGGTTTCATCATCGGTGGCACCTACGCC
AAGCTCTCCCAGCATATCGCGGCCTTTGTCGTGCTCTACGGGTTGCTACA
GGCCTTTGGACACCTGGGGCCCGGCGCCACCATCGGCCTCATATCCAGTG
AATCATTCCCCACCGCCATGCGCGGCATGGGGTACAGTGTGGCCACGGCC
TTTGGTCGCACGGGAGCGGCGGTGGGCACGCAGTGTTTTACGCCCCTGCA
GGATGCCGCCGGAGACAGCGCCACCTTCTACCTTCTGGGTGGCGTGGCGA
TTCTGGGCATGATTGTGTACTGGTTCCTGCCCGAAAGCGGGAAATTGGAT
CTGGAGAAGGAGGATCGCGAGCTGGAGGAGTATCTGGCTGGTCATGGGTT
CACCATGGAGAAAAAATACTAAATGCGCGAGAATACGTCCGACAAAAGAG
CAGCCGAGACGGTAGTGGCTGACCAGGAGGTGGAAAGTGGTCCGCCGTCA
GCCTACCGTCCCACGCGGTGGCAGAGCAATTTGACCATCCTGAGCTGCTA
TATCGCCAACTTCAGCGATGGGTTCCAAAACCAATTGGCCAATCCCACAA
ATGTCATCTTCAAGAAATTGTTGGGCAAATCCGGCTACCCATCGGAGATG
CAGACGCGCATTAGCAATTCCCTGCTCATCGGTGCCATTCTGGGCGTGGT
CGTGCTGGGATACGTCTCGGACATGGCCTCCCGGCGCGCGGGTCTTCTCT
TCACCTCGGGCCTGGTCACCATCTCCACGCTGATGGCCACCCTGGCCCTG
CAGGTGCACCCTTCTCACAACATGCTCTGGTACTTTGTCATCGTCCGTGG
CATTTGTGGGTTTGGCGTGGGCGGAGAATACCCTCCCAGTGCGGCGGCCG
GCCTGGAAGAATCGGACGATTTTAAGCGCCGCTACCGAGGACCTGTCTTT
GTCTCCTTCACCACGCTGATGGCCACCACCGCCTCTCCCATTCTGATGAT
CATCTACCTGATCTGCCTCAAGGCCACCAACAACAACCTGCCCATCACCT
TCCATGCCATCTACAGCATTGCCACCATCTTACCCGCCATCATCATGGTT
TTGCGATTTTTCATGACCGACTCGACCTTGTATCACCATTCCAACTTCAA
GCGCCAGCGGAAACCCGCCCGATTCTACTGGGTGCTGGTGCGCCGGTACT
GGAAGCGGCTCTTCACCACCTCGCTGGCCTTCTTCCTCTACGACTTTATC
AACTTCCCCAACAGCATCATGTCGAGCACCATCATCTCCTCGCTCGTCAA
GGACGGCAACATCCAGACGACCGCCATCTGGCAGGTCATTCTGGCGGCGC
TCCCCGTCCCCGGCGTCATCATCGGCGCATGGCTGACCAATTTGATCGGA
CGCCGGGGCACCGGAATGGTCGGATTCGCGGGCTACGTGGTCCTGGGTTT
CATCATCGGTGGCACCTACGCCAAGCTCTCCCAGCATATCGCGGCCTTTG
TCGTGCTCTACGGGTTGCTACAGGCCTTTGGACACCTGGGGCCCGGCGCC
ACCATCGGCCTCATATCCAGTGAATCATTCCCCACCGCCATGCGCGGCAT
GGGGTACAGTGTGGCCACGGCCTTTGGTCGCACGGGAGCGGCGGTGGGCA
CGCAGTGTTTTACGCCCCTGCAGGATGCCGCCGGAGACAGCGCCACCTTC
TACCTTCTGGGTGGCGTGGCGATTCTGGGCATGATTGTGTACTGGTTCCT
GCCCGAAAGCGGGAAATTGGATCTGGAGAAGGAGGATCGCGAGCTGGAGG
AGTATCTGGCTGGTCATGGGTTCACCATGGAGAAAAAATACTAAATGCGC
GAGAATACGTCCGACAAAAGAGCAGCCGAGACGGTAGTGGCTGACCAGGA
GGTGGAAAGTGGTCCGCCGTCAGCCTACCGTCCCACGCGGTGGCAGAGCA
ATTTGACCATCCTGAGCTGCTATATCGCCAACTTCAGCGATGGGTTCCAA
AACCAATTGGCCAATCCCACAAATGTCATCTTCAAGAAATTGTTGGGCAA
ATCCGGCTACCCATCGGAGATGCAGACGCGCATTAGCAATTCCCTGCTCA
TCGGTGCCATTCTGGGCGTGGTCGTGCTGGGATACGTCTCGGACATGGCC
TCCCGGCGCGCGGGTCTTCTCTTCACCTCGGGCCTGGTCACCATCTCCAC
GCTGATGGCCACCCTGGCCCTGCAGGTGCACCCTTCTCACAACATGCTCT
GGTACTTTGTCATCGTCCGTGGCATTTGTGGGTTTGGCGTGGGCGGAGAA
TACCCTCCCAGTGCGGCGGCCGGCCTGGAAGAATCGGACGATTTTAAGCG
CCGCTACCGAGGACCTGTCTTTGTCTCCTTCACCACGCTGATGGCCACCA
CCGCCTCTCCCATTCTGATGATCATCTACCTGATCTGCCTCAAGGCCACC
AACAACAACCTGCCCATCACCTTCCATGCCATCTACAGCATTGCCACCAT
CTTACCCGCCATCATCATGGTTTTGCGATTTTTCATGACCGACTCGACCT
TGTATCACCATTCCAACTTCAAGCGCCAGCGGAAACCCGCCCGATTCTAC
TGGGTGCTGGTGCGCCGGTACTGGAAGCGGCTCTTCACCACCTCGCTGGC
CTTCTTCCTCTACGACTTTATCAACTTCCCCAACAGCATCATGTCGAGCA
CCATCATCTCCTCGCTCGTCAAGGACGGCAACATCCAGACGACCGCCATC
TGGCAGGTCATTCTGGCGGCGCTCCCCGTCCCCGGCGTCATCATCGGCGC
ATGGCTGACCAATTTGATCGGACGCCGGGGCACCGGAATGGTCGGATTCG
CGGGCTACGTGGTCCTGGGTTTCATCATCGGTGGCACCTACGCCAAGCTC
TCCCAGCATATCGCGGCCTTTGTCGTGCTCTACGGGTTGCTACAGGCCTT
TGGACACCTGGGGCCCGGCGCCACCATCGGCCTCATATCCAGTGAATCAT
TCCCCACCGCCATGCGCGGCATGGGGTACAGTGTGGCCACGGCCTTTGGT
CGCACGGGAGCGGCGGTGGGCACGCAGTGTTTTACGCCCCTGCAGGATGC
CGCCGGAGACAGCGCCACCTTCTACCTTCTGGGTGGCGTGGCGATTCTGG
GCATGATTGTGTACTGGTTCCTGCCCGAAAGCGGGAAATTGGATCTGGAG
AAGGAGGATCGCGAGCTGGAGGAGTATCTGGCTGGTCATGGGTTCACCAT
GGAGAAAAAATACTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0022857 | transmembrane transporter activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011227-T1.utr5p1 | KJC3_011227-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036259 |
| DBxref | InterPro:IPR020846 |
| DBxref | InterPro:IPR005828 |
| DBxref | PFAM:PF00083 |
| DBxref | PFAM:PF07690 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:88073..89772 + |
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