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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:284872..287133- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011316-T1 ID=KJC3_011316-T1|Name=KJC3_011316-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2262bp|location=Sequence derived from alignment at ch8:284872..287133- (Aspergillus niger KJC3)
CTTTCACCTCGATCTAGGTCCTTACTCTGGTGAGCATGTCCGCATACTAT
CCAGATGGAGCACGCTCACCAGGCGTTCCCTAAATTATGTGATGATATAT
TATCCTTGCCACCACTGCATGATGAAGACGCTGTTTCATATCCCGCCACC
GTAGACCCCATCTTCTCGCTACCGTCGGAGCTTCCCGATAGCTTCTCTCC
TCTTCCATTCCAGCCAGATGCGACATCAGTATCTCCAGATAGCGGACCTA
CCCCGCCTACACGCCCTCATCAGCGTCTATCCGTGGAGGCCGTGAGAACC
CTCAAGTCATGGCTCAACAACCACCCGGAGAACCCATATCCCACGACCCA
GGAGAAGGATGAGCTGGCGCAACGCACCAGTCTGACTCGGGCGCAAGTCT
CCAACTGGTTTATCAACGCTCGACGGCGTAAGCGCTCCAGCGGGTATATG
TCTGCCTGTCAGAGCCCGTCATTCCTATCCCCCATGGAACGTTGGAGGAG
CTCGCCACCGGAAAGCGAGGCCGCAGCCACAGATGACATCCTGCGAGCTC
TCGCCGATAGCGATATTTCCGCTTTTTCGGACAGCTCGCCATACACTGTA
CCCCAGTACGCCTGGTCCAGCAACGACTCCAGCGGCTCCTTCGTTCTCGG
GGATGCTTCCATCAGCAGCTGTGGACGCAGCCAGTCATCCAGCTCGGAGA
TTTCGGTCGCCTTATCATCGCATAGGCCGCCACAACGTCCACCAACCCCA
CTTCATCGTCCGTCATCTCGTCGCCACCGTCGGAAACACATCCGTCATGC
AAACCGTCTGCAGTGGACTCGTAGGCCCTACCAGTGTACGTTCTGCGCGG
ACACGTTCGCAACGAAATACGACTGGCAGCGCCACGAGAAGGCTCTTCAC
CTTCCCGTCGACCAATGGCGCTGTTCTCCAGAAGGCGGACTCATCATCGA
CAACAACGGCACACCTGTGTGCGTCTTCTGTCAACAAGCCAACGCAGACG
AAGACCATCTCGAAACAGCACACAACTACAGTACCTGTCTCGAGAAACCA
TCCGAGCAACGCATCTTCACTCGGAAGGACAACCTCCGGCAGCACCTGAA
ACTAACCCACCGCGTCGACACTTTCCATGCAGCCATGCTCACCTGGCGCG
AAAGCCGAGGCCACGGTATCCTCTCCCGCTGCGGGTTCTGCAGCGCAATG
TTTCAATCCTGGCAGGAGAGAGTCGACCATGTCGCAGAGCATTTCAAGCA
CGGTGCCGACATGAAGCAGTGGATGGGCGATTGGGGTTTCGAGCCGGAAG
CTCAGCGGCTCGTTGAGAATGCGATACCGCCATATTTGATTGGGCGTGAG
GCGCAGACGCCTGATCCGTGGCGGACATCGGATGTGTTTCCGATGCCGCG
GGAGGAGGATGAAGAGGACGATGAAATTCCGTTTCGGTGGGATGTGCCGA
CTGCTTTGGATCGGTATTTTGATGTGCACCGCGATCTGTTGGCGTTTATT
CGCGAACAGATGTCGAATGGATGCAGGCCGTCGGATCAGATGATTCAGGA
TCGTGCGAGGCTGTTCGCGTATGAGAGTGATGATCCGTGGAACCAGACAT
ATGCGGATGATTTGTGTTGGCTGGAGGCGGTTAAGCAGGAAGCTGGGTTG
GTTTAGAGATAGGATGTTCTGTTTCTAATGACGTCTTGCCACGAAATGCG
TTATGAATCTCTGAGTTGTCTGGCCATTGGCTAGTTATGCGTTCGATTTT
TGAACTTTGGAGTATTATCTCGGCTGTTTGCTGCATATGGTAGGCCTTGT
GTCAATGTTACAGCCTTGGTACACCTTTGACATGATGGATTTTTGGTTGA
CTCAAACGGGTTACTCACTATTCAGGTGTCCCACACAATTAGGTTTTCAG
CCTCCCCTCCATCCACATTTTGGTGGTAGGACCCTCAGATCTGGCGAATA
TATTCCTGGCCCACTTGGCAATCCCCAGAGTTATGGGGATAGATTAGGTG
ATTTTCGTTATCGCCGGGTCCAAGGAGCACTCCTTGGGGGGTTCGGTCTC
CGTCGGTCCAGATATAATGGTGCAATGTACTAGCAGGGATGTCCAATGAT
AAGACCTCGAATCCAGACCACTTGTTATTCTGTGTATATTTTCAGCCTAC
CTGTGACTGTAACAGGCCAATCACTGGCTTATCTATATGATACGGAAGTC
ATATATAATCCCGCTTCTTTCTGCGTCGATCGTGTCTATTAATCTCTTGA
TCTATCTCTTGG back to topCoding sequence (CDS) from alignment at ch8:284872..287133- >KJC3_011316-T1 ID=KJC3_011316-T1|Name=KJC3_011316-T1|organism=Aspergillus niger KJC3|type=CDS|length=1602bp|location=Sequence derived from alignment at ch8:284872..287133- (Aspergillus niger KJC3)
ATGGAGCACGCTCACCAGGCGTTCCCTAAATTATGTGATGATATATTATC
CTTGCCACCACTGCATGATGAAGACGCTGTTTCATATCCCGCCACCGTAG
ACCCCATCTTCTCGCTACCGTCGGAGCTTCCCGATAGCTTCTCTCCTCTT
CCATTCCAGCCAGATGCGACATCAGTATCTCCAGATAGCGGACCTACCCC
GCCTACACGCCCTCATCAGCGTCTATCCGTGGAGGCCGTGAGAACCCTCA
AGTCATGGCTCAACAACCACCCGGAGAACCCATATCCCACGACCCAGGAG
AAGGATGAGCTGGCGCAACGCACCAGTCTGACTCGGGCGCAAGTCTCCAA
CTGGTTTATCAACGCTCGACGGCGTAAGCGCTCCAGCGGGTATATGTCTG
CCTGTCAGAGCCCGTCATTCCTATCCCCCATGGAACGTTGGAGGAGCTCG
CCACCGGAAAGCGAGGCCGCAGCCACAGATGACATCCTGCGAGCTCTCGC
CGATAGCGATATTTCCGCTTTTTCGGACAGCTCGCCATACACTGTACCCC
AGTACGCCTGGTCCAGCAACGACTCCAGCGGCTCCTTCGTTCTCGGGGAT
GCTTCCATCAGCAGCTGTGGACGCAGCCAGTCATCCAGCTCGGAGATTTC
GGTCGCCTTATCATCGCATAGGCCGCCACAACGTCCACCAACCCCACTTC
ATCGTCCGTCATCTCGTCGCCACCGTCGGAAACACATCCGTCATGCAAAC
CGTCTGCAGTGGACTCGTAGGCCCTACCAGTGTACGTTCTGCGCGGACAC
GTTCGCAACGAAATACGACTGGCAGCGCCACGAGAAGGCTCTTCACCTTC
CCGTCGACCAATGGCGCTGTTCTCCAGAAGGCGGACTCATCATCGACAAC
AACGGCACACCTGTGTGCGTCTTCTGTCAACAAGCCAACGCAGACGAAGA
CCATCTCGAAACAGCACACAACTACAGTACCTGTCTCGAGAAACCATCCG
AGCAACGCATCTTCACTCGGAAGGACAACCTCCGGCAGCACCTGAAACTA
ACCCACCGCGTCGACACTTTCCATGCAGCCATGCTCACCTGGCGCGAAAG
CCGAGGCCACGGTATCCTCTCCCGCTGCGGGTTCTGCAGCGCAATGTTTC
AATCCTGGCAGGAGAGAGTCGACCATGTCGCAGAGCATTTCAAGCACGGT
GCCGACATGAAGCAGTGGATGGGCGATTGGGGTTTCGAGCCGGAAGCTCA
GCGGCTCGTTGAGAATGCGATACCGCCATATTTGATTGGGCGTGAGGCGC
AGACGCCTGATCCGTGGCGGACATCGGATGTGTTTCCGATGCCGCGGGAG
GAGGATGAAGAGGACGATGAAATTCCGTTTCGGTGGGATGTGCCGACTGC
TTTGGATCGGTATTTTGATGTGCACCGCGATCTGTTGGCGTTTATTCGCG
AACAGATGTCGAATGGATGCAGGCCGTCGGATCAGATGATTCAGGATCGT
GCGAGGCTGTTCGCGTATGAGAGTGATGATCCGTGGAACCAGACATATGC
GGATGATTTGTGTTGGCTGGAGGCGGTTAAGCAGGAAGCTGGGTTGGTTT
AG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0043565 | sequence-specific DNA binding |
| GO:0003677 | DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011316-T1.utr5p1 | KJC3_011316-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009057 |
| DBxref | InterPro:IPR017970 |
| DBxref | InterPro:IPR008422 |
| DBxref | InterPro:IPR013087 |
| DBxref | InterPro:IPR001356 |
| DBxref | PFAM:PF00046 |
| DBxref | PFAM:PF05920 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:284872..287133 - |
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