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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:397620..400399+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011362-T1 ID=KJC3_011362-T1|Name=KJC3_011362-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2780bp|location=Sequence derived from alignment at ch8:397620..400399+ (Aspergillus niger KJC3)
GTCTCTTGAGAACCCTCAATGTTCGGACTGCAATATGGGGCTCTTGAGCT
AGCAGTTGGCTAGGACTTGCCATGCAAAGCGACATCAAGGATGGCAATAG
AGAAACTGGTCAATCTGAATAGCTATGAAACACAGGCAGCGACGTCATGT
CAGATATTTTGACAATTGCCAACATTGGATCGCATCCTCCTGTCTTCTTA
CACTGGGTGTGCTTCGATTTCAGACATGCCTGGTTTATCACCATAATAAT
CCACTCACTGCAAGTATTTCCATGAGCAACCTCGATTTCCAAATTGTGGG
AGATATCGTGCTAACCGAAGTGTTCAGGCCTGGCTTCAGTCTGCGCTAAA
AACCCCTCCCTCTACCGATGTCTAGTCATTCAGCAGCAGAATGTCACCTG
AACCCTGCTCGGCAATTCCGTCGGCTGTTCCCCAGGCCCTATCCATATAT
GCCGCGTTCTAAGCGTGGAGTTATACTAGGCCTCGGCCAGTAGCGAACGA
ATGCCTTGCAGCAGCAACACGATCAAGCCCCCAGTCCCCACACGCCACCC
CACAGTAATCCGGGGAGATGGGGGCCCAGCATCGCATCAGGAACGATTCC
GCTCGGGGTTCAGTAGAATTCGGATTCTCCGCATTCAATCTTCGCTTAAG
CGACCCTGTCGGCCAAGTCGATCCAACATGAATCCCCACATGGTCTTCAC
TCCCCAGTATGTTCCGAAACTGCTCCGCATTCGGAATTCCTATCGTCCAA
TCCAATTGACAGACGGGCACCTCCACTGGCTCAATTCGACTCCCCAATAA
CTCAGGGAAATCTGCTACCAGACACAACTAGAAGAGGCATGTTCAGCGAG
GTCCATCTCACCCACCGCAGAAGAATTTACCGAGGATACGCTCGGACTTC
TCAAATTGGGCGTCCATCATAGAATACGCACTTTAGCTGGAAGAACGGAA
ATTATCGCTCCCCAACAATGCCCACTTTCCGAATTGCTATGCTACAGTGC
ACTCCATAGCATTACCCCGCTAGTGCCCACTGCTTCGAGTTTTGGAATTG
CCGGTGTCATGACCGAAACTGCTTAATATGATATCACATACGGGGACGCC
TCACAGCGTCAGCGAGCTATAAAATGTGTCAATTCCCTTTCCAAGTCTCC
TTGGATGCTGAGCCTGCCTCAAGTATATCATAGAAGACTCAAAATGCGTC
AATTCAGCAGCTATAACGCTGCCAATCTCCTCACTTTCTTTCTCGGCGCA
AAAGCTGCCGCAGAGTCCACCTGGCCCCAGCAGACTTTCCGCAGTACTTC
TATCCAAGCACCATATCTGAACGTCACCAAGAATGGCAAGACAGAGTTAG
GCCACCTCTTTTTCTCTCCATCCTCCTCCACCATGGAATGGAGCTACCCA
GCCATATACTCCGATGACGGCCAGCTTGTATGGCAAGGCCCCAATGCCAA
CACGTCCGCCTACCAGCCCCAAATGCTGGACGGCGAACCCGTCCTAGCCT
ACTGGCAGGGCGCCAACTACCAAGGCTATGGCTTTGGAGCAATCAGCATC
CTCAACGCCTCTTACCAGGAGATTCACCGCATAACACTGCCTGGGACTGA
GCAGCACTTCGTCACCACCGCCGACCCCGAAACCTTCCCCTCCTACATCG
ACATCCACGAGAGCCAGATCACATCAGACGGCACCATCCTCGTAACAGCC
GTGAACGTCACCCAATTCGACCTCTCCCCCATCGGCGGCCCTAAAGACGG
CTGGGTACAGGACGGCCTGTTCTACGAAATCGACATCAAGACCAACAAAG
TCCTCTTCCGCTGGAGCACAGTCGAACACCTGTCCGAGATCCCCCTAACA
GACACCGAACTCCCTCTCCTAGGATCAGGTACCAGCAAGTCCGACCCCTA
CGAATACCCTCACCTCAACTCTGTAGCCAAATACGGCGACTCCTACCTCC
TCTCCTCCCGCTTCCTGTGCAGCATCTTCCTCCTCGACAAGAACGGCAAC
GTAACCTGGCAACTCCACGTACGTCCCTTCCCCCCACCTCTCCCACCCTG
ACCACTCCCACTAACACAACCACAGGGCCAAAAAGGCGCCTCCTTCACTC
TCACCCCCGGCAGCAGCTTCTGCTACCAACACGACCCCCGCTTCGTCAAC
TACTCCCCCAACGCAACTTCCCTAACCCTGCACCTACACAACAACGAGAA
TGCCAATGTCTTCACCTCCCCCACAACCATCACCACGGGCCTAACCCTCA
CCCTAGACATGCAAAACCATACCGTAACCCCCGTCCGCAAGCTCTGGAAC
TCCGACGCTCCCCTCTTTGCCGTAAGCCAGGGTAGCTTCCAGCCGCTTCC
GAACGGGCACGTGCTGCTCCAGCACGGCGCGATGCCGGTGCTCGAGGAAT
ACAATGAGAACGGGGCGCTGGTGATGAACGCGCGGTTTGGATTCGATGAA
TCGACGCAGTCGTATCGCGGATATCGGTTCCGCGAGTGGGTTGGGAAGCC
GACGACGAGGCCGGAGGCGGTGGCTTGTCGGGAGGGGGGAAGTGATGCGG
TGGTTGTCTATGTGAGTTGGAATGGGGCGACGGATGTGAGGGGGTGGAAG
GTACGGATGGGGGATGAGTTGGCGGTTGTGGGGGATGTGAGGGACAAGAA
TGGCTTTGAGACGAGGATTGTGCTTGAGGGGGTGGAGGGGAGGGATGGGG
AGAAGGTTGTTGTGCAGGCTGTTGGAGGGGTTGGGGATGGTGTGCAGTCG
AGCGTTGTTAAGGTTGGGGAGGGGTGTTGA back to topCoding sequence (CDS) from alignment at ch8:397620..400399+ >KJC3_011362-T1 ID=KJC3_011362-T1|Name=KJC3_011362-T1|organism=Aspergillus niger KJC3|type=CDS|length=3138bp|location=Sequence derived from alignment at ch8:397620..400399+ (Aspergillus niger KJC3)
ATGCTGAGCCTGCCTCAAGTATATCATAGAAGACTCAAAATGCGTCAATT
CAGCAGCTATAACGCTGCCAATCTCCTCACTTTCTTTCTCGGCGCAAAAG
CTGCCGCAGAGTCCACCTGGCCCCAGCAGACTTTCCGCAGTACTTCTATC
CAAGCACCATATCTGAACGTCACCAAGAATGGCAAGACAGAGTTAGGCCA
CCTCTTTTTCTCTCCATCCTCCTCCACCATGGAATGGAGCTACCCAGCCA
TATACTCCGATGACGGCCAGCTTGTATGGCAAGGCCCCAATGCCAACACG
TCCGCCTACCAGCCCCAAATGCTGGACGGCGAACCCGTCCTAGCCTACTG
GCAGGGCGCCAACTACCAAGGCTATGGCTTTGGAGCAATCAGCATCCTCA
ACGCCTCTTACCAGGAGATTCACCGCATAACACTGCCTGGGACTGAGCAG
CACTTCGTCACCACCGCCGACCCCGAAACCTTCCCCTCCTACATCGACAT
CCACGAGAGCCAGATCACATCAGACGGCACCATCCTCGTAACAGCCGTGA
ACGTCACCCAATTCGACCTCTCCCCCATCGGCGGCCCTAAAGACGGCTGG
GTACAGGACGGCCTGTTCTACGAAATCGACATCAAGACCAACAAAGTCCT
CTTCCGCTGGAGCACAGTCGAACACCTGTCCGAGATCCCCCTAACAGACA
CCGAACTCCCTCTCCTAGGATCAGGTACCAGCAAGTCCGACCCCTACGAA
TACCCTCACCTCAACTCTGTAGCCAAATACGGCGACTCCTACCTCCTCTC
CTCCCGCTTCCTGTGCAGCATCTTCCTCCTCGACAAGAACGGCAACGTAA
CCTGGCAACTCCACGGCCAAAAAGGCGCCTCCTTCACTCTCACCCCCGGC
AGCAGCTTCTGCTACCAACACGACCCCCGCTTCGTCAACTACTCCCCCAA
CGCAACTTCCCTAACCCTGCACCTACACAACAACGAGAATGCCAATGTCT
TCACCTCCCCCACAACCATCACCACGGGCCTAACCCTCACCCTAGACATG
CAAAACCATACCGTAACCCCCGTCCGCAAGCTCTGGAACTCCGACGCTCC
CCTCTTTGCCGTAAGCCAGGGTAGCTTCCAGCCGCTTCCGAACGGGCACG
TGCTGCTCCAGCACGGCGCGATGCCGGTGCTCGAGGAATACAATGAGAAC
GGGGCGCTGGTGATGAACGCGCGGTTTGGATTCGATGAATCGACGCAGTC
GTATCGCGGATATCGGTTCCGCGAGTGGGTTGGGAAGCCGACGACGAGGC
CGGAGGCGGTGGCTTGTCGGGAGGGGGGAAGTGATGCGGTGGTTGTCTAT
GTGAGTTGGAATGGGGCGACGGATGTGAGGGGGTGGAAGGTACGGATGGG
GGATGAGTTGGCGGTTGTGGGGGATGTGAGGGACAAGAATGGCTTTGAGA
CGAGGATTGTGCTTGAGGGGGTGGAGGGGAGGGATGGGGAGAAGGTTGTT
GTGCAGGCTGTTGGAGGGGTTGGGGATGGTGTGCAGTCGAGCGTTGTTAA
GGTTGGGGAGGGGTGTTGAATGCTGAGCCTGCCTCAAGTATATCATAGAA
GACTCAAAATGCGTCAATTCAGCAGCTATAACGCTGCCAATCTCCTCACT
TTCTTTCTCGGCGCAAAAGCTGCCGCAGAGTCCACCTGGCCCCAGCAGAC
TTTCCGCAGTACTTCTATCCAAGCACCATATCTGAACGTCACCAAGAATG
GCAAGACAGAGTTAGGCCACCTCTTTTTCTCTCCATCCTCCTCCACCATG
GAATGGAGCTACCCAGCCATATACTCCGATGACGGCCAGCTTGTATGGCA
AGGCCCCAATGCCAACACGTCCGCCTACCAGCCCCAAATGCTGGACGGCG
AACCCGTCCTAGCCTACTGGCAGGGCGCCAACTACCAAGGCTATGGCTTT
GGAGCAATCAGCATCCTCAACGCCTCTTACCAGGAGATTCACCGCATAAC
ACTGCCTGGGACTGAGCAGCACTTCGTCACCACCGCCGACCCCGAAACCT
TCCCCTCCTACATCGACATCCACGAGAGCCAGATCACATCAGACGGCACC
ATCCTCGTAACAGCCGTGAACGTCACCCAATTCGACCTCTCCCCCATCGG
CGGCCCTAAAGACGGCTGGGTACAGGACGGCCTGTTCTACGAAATCGACA
TCAAGACCAACAAAGTCCTCTTCCGCTGGAGCACAGTCGAACACCTGTCC
GAGATCCCCCTAACAGACACCGAACTCCCTCTCCTAGGATCAGGTACCAG
CAAGTCCGACCCCTACGAATACCCTCACCTCAACTCTGTAGCCAAATACG
GCGACTCCTACCTCCTCTCCTCCCGCTTCCTGTGCAGCATCTTCCTCCTC
GACAAGAACGGCAACGTAACCTGGCAACTCCACGGCCAAAAAGGCGCCTC
CTTCACTCTCACCCCCGGCAGCAGCTTCTGCTACCAACACGACCCCCGCT
TCGTCAACTACTCCCCCAACGCAACTTCCCTAACCCTGCACCTACACAAC
AACGAGAATGCCAATGTCTTCACCTCCCCCACAACCATCACCACGGGCCT
AACCCTCACCCTAGACATGCAAAACCATACCGTAACCCCCGTCCGCAAGC
TCTGGAACTCCGACGCTCCCCTCTTTGCCGTAAGCCAGGGTAGCTTCCAG
CCGCTTCCGAACGGGCACGTGCTGCTCCAGCACGGCGCGATGCCGGTGCT
CGAGGAATACAATGAGAACGGGGCGCTGGTGATGAACGCGCGGTTTGGAT
TCGATGAATCGACGCAGTCGTATCGCGGATATCGGTTCCGCGAGTGGGTT
GGGAAGCCGACGACGAGGCCGGAGGCGGTGGCTTGTCGGGAGGGGGGAAG
TGATGCGGTGGTTGTCTATGTGAGTTGGAATGGGGCGACGGATGTGAGGG
GGTGGAAGGTACGGATGGGGGATGAGTTGGCGGTTGTGGGGGATGTGAGG
GACAAGAATGGCTTTGAGACGAGGATTGTGCTTGAGGGGGTGGAGGGGAG
GGATGGGGAGAAGGTTGTTGTGCAGGCTGTTGGAGGGGTTGGGGATGGTG
TGCAGTCGAGCGTTGTTAAGGTTGGGGAGGGGTGTTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR039535 |
| DBxref | PFAM:PF14269 |
| DBxref | PFAM:PF05935 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:397620..400399 + |
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