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KJC3_011482-T1, KJC3_011482-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011482-T1
Unique NameKJC3_011482-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:768977..770254-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011482-T1 ID=KJC3_011482-T1|Name=KJC3_011482-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1278bp|location=Sequence derived from alignment at ch8:768977..770254- (Aspergillus niger KJC3)
ATGGCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCCGA
CGGTGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGCTG
AGGAGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCGAC
ATCAGTACGTCCGCCCGATATTTCATTTTGCATTTGATTCCAGATCCTGT
GTGTTGTGTTGGAAAAGGCCGGAAATTGGAGATTGGAAGAATCGACCGGG
GAAAAGAATGGTGATCCGGGAGGAGGAAAAGAAAAACAGTTATCGGGAAT
ACGGCCGGGAATATCAACCAACCACGGGGAACTACTGGAATTGGAGACAA
TTTTATATACAAAGGAAGATGGAATATGTGCCAGTTGCTAACGGATGCTT
TCTTTACAGTCATCCGTGCCACCCACACCCAGGAGGTTCTCGGTGAGCAG
GGCCGCCGCATCCGCGAGCTCACCTCCCTCATCCAGAAGCGCTTCAAGTT
CCCCGAGAACTCCGTTTCCCTCTATGCCGCCAAGGTCCAGAACCGCGGTC
TCTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTTCTCAACGGT
CTGGCCGTCCGCCGTGCCTGCTACGGTGTTCTCCGTTTCATCATGGAGAG
CGGTGCCAAGGGTTGCGAGGTCGTCGTCTCCGGAAAGCTCCGTGCTGCCC
GTGCCAAGTCCATGAAGTTCACTGTACGTCTACCAACAGCGATTGATTTT
GTTTTTCGAATGGTCGGATCGGTCCCGAAGCAGTGGTGGAATTTGCGCAT
ATCCAACGACAACGATGCCTACTACGATCTGCAACAACGAAGCAACTGTG
CAAAGGACCGGACCGAAGCTCTACACCATTCGAAACACTCCATCATATGC
ATGCTATAACGGTATCAGAAAACTAACAACAATTCTTCTCAATAGGACGG
TTTCATGATCCACTCCGGTCAGCCCGCCAAGGAATTCATCGACAGCGCTA
CCCGCCACGTTCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTTAAGATC
ATGCGCGGTTCCGACCCCGAGGGCAAGGCCGGTCCCCAGAAGACTCTCCC
CGATGCCGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTCCTGCAGC
CCATGAGCCAGGACTACGGCGCCAAGGCTCTTGCCGCTCAGCAGGCCGCC
GAGCAGCAGCGTCTGGCCGAGCAGCAGGCCACCGAGGCCCAGGAGGGTGC
CGGTGCCGAGGCTTACGCCCAGGAGTAA
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Coding sequence (CDS) from alignment at ch8:768977..770254-

>KJC3_011482-T1 ID=KJC3_011482-T1|Name=KJC3_011482-T1|organism=Aspergillus niger KJC3|type=CDS|length=2403bp|location=Sequence derived from alignment at ch8:768977..770254- (Aspergillus niger KJC3)
GACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGAATTCATCGACAG
CGCTACCCGCCACGTTCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTTA
AGATCATGCGCGGTTCCGACCCCGAGGGCAAGGCCGGTCCCCAGAAGACT
CTCCCCGATGCCGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTCCT
GCAGCCCATGAGCCAGGACTACGGCGCCAAGGCTCTTGCCGCTCAGCAGG
CCGCCGAGCAGCAGCGTCTGGCCGAGCAGCAGGCCACCGAGGCCCAGGAG
GGTGCCGGTGCCGAGGCTTACGCCCAGGAGTAATCATCCGTGCCACCCAC
ACCCAGGAGGTTCTCGGTGAGCAGGGCCGCCGCATCCGCGAGCTCACCTC
CCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTTTCCCTCTATG
CCGCCAAGGTCCAGAACCGCGGTCTCTCCGCCGTCGCTCAGTGCGAGTCC
CTCCGCTACAAGCTTCTCAACGGTCTGGCCGTCCGCCGTGCCTGCTACGG
TGTTCTCCGTTTCATCATGGAGAGCGGTGCCAAGGGTTGCGAGGTCGTCG
TCTCCGGAAAGCTCCGTGCTGCCCGTGCCAAGTCCATGAAGTTCACTATG
GCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCCGACGG
TGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGCTGAGG
AGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCGACATC
AGACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGAATTCATCGACA
GCGCTACCCGCCACGTTCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTT
AAGATCATGCGCGGTTCCGACCCCGAGGGCAAGGCCGGTCCCCAGAAGAC
TCTCCCCGATGCCGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTCC
TGCAGCCCATGAGCCAGGACTACGGCGCCAAGGCTCTTGCCGCTCAGCAG
GCCGCCGAGCAGCAGCGTCTGGCCGAGCAGCAGGCCACCGAGGCCCAGGA
GGGTGCCGGTGCCGAGGCTTACGCCCAGGAGTAATCATCCGTGCCACCCA
CACCCAGGAGGTTCTCGGTGAGCAGGGCCGCCGCATCCGCGAGCTCACCT
CCCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTTTCCCTCTAT
GCCGCCAAGGTCCAGAACCGCGGTCTCTCCGCCGTCGCTCAGTGCGAGTC
CCTCCGCTACAAGCTTCTCAACGGTCTGGCCGTCCGCCGTGCCTGCTACG
GTGTTCTCCGTTTCATCATGGAGAGCGGTGCCAAGGGTTGCGAGGTCGTC
GTCTCCGGAAAGCTCCGTGCTGCCCGTGCCAAGTCCATGAAGTTCACTAT
GGCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCCGACG
GTGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGCTGAG
GAGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCGACAT
CAGACGGTTTCATGATCCACTCCGGTCAGCCCGCCAAGGAATTCATCGAC
AGCGCTACCCGCCACGTTCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGT
TAAGATCATGCGCGGTTCCGACCCCGAGGGCAAGGCCGGTCCCCAGAAGA
CTCTCCCCGATGCCGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTC
CTGCAGCCCATGAGCCAGGACTACGGCGCCAAGGCTCTTGCCGCTCAGCA
GGCCGCCGAGCAGCAGCGTCTGGCCGAGCAGCAGGCCACCGAGGCCCAGG
AGGGTGCCGGTGCCGAGGCTTACGCCCAGGAGTAATCATCCGTGCCACCC
ACACCCAGGAGGTTCTCGGTGAGCAGGGCCGCCGCATCCGCGAGCTCACC
TCCCTCATCCAGAAGCGCTTCAAGTTCCCCGAGAACTCCGTTTCCCTCTA
TGCCGCCAAGGTCCAGAACCGCGGTCTCTCCGCCGTCGCTCAGTGCGAGT
CCCTCCGCTACAAGCTTCTCAACGGTCTGGCCGTCCGCCGTGCCTGCTAC
GGTGTTCTCCGTTTCATCATGGAGAGCGGTGCCAAGGGTTGCGAGGTCGT
CGTCTCCGGAAAGCTCCGTGCTGCCCGTGCCAAGTCCATGAAGTTCACTA
TGGCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCCGAC
GGTGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGCTGA
GGAGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCGACA
TCA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS3KJC3_011482Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011482-T1KJC3_011482-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011482-T1.cdsKJC3_011482-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011482-T1.exon3KJC3_011482-T1.exon3Aspergillus niger KJC3exon
KJC3_011482-T1.exon2KJC3_011482-T1.exon2Aspergillus niger KJC3exon
KJC3_011482-T1.exon1KJC3_011482-T1.exon1Aspergillus niger KJC3exon


Properties
Property NameValue
NoteBUSCO:EOG092647L7
DBxrefInterPro:IPR009019
DBxrefInterPro:IPR018280
DBxrefInterPro:IPR036419
DBxrefInterPro:IPR015946
DBxrefInterPro:IPR004044
DBxrefInterPro:IPR005703
DBxrefInterPro:IPR001351
DBxrefPFAM:PF00189
DBxrefPFAM:PF07650
Product40S ribosomal protein S3
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:768977..770254 -
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