You are here

Home

KJC3_011486-T2, KJC3_011486-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011486-T2
Unique NameKJC3_011486-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:778180..779927-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011486-T2 ID=KJC3_011486-T2|Name=KJC3_011486-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1748bp|location=Sequence derived from alignment at ch8:778180..779927- (Aspergillus niger KJC3)
ACAGTTACTACTCGGAGGGCTATCTATACTGTCTATAAATATTCCAGAGC
GCCCATCTTTTCAAGTCCTCAAACGTTAGCGCGTACGTGATCCTGATTAG
ATATGTCCAGGCGGTCAGTTCCTGCCGTCAGGGGGAAGCTCGCCGCCTTT
GCTCCGGATGTGGGGGTTCGGAGAGGGCCTCGACCGGCAGCGCCTCTCAG
GACATCGTGAAGCTACCCGGACACTCGAATAGATGAAAGACTAGTGATTC
AGAGCCGTTTACTTCGCTTCGGGCTTGCCAAACATGCAGGCCTTCGGTAT
GTTACCCATTCTATATCTCATCAAACAAATCGGGTCACCAGAATAGATGA
CATGTCTTTTGGCAATTGCGCTAATGATGCAACTCTAGTCCCCAAGAACC
GGAGAGTAAGTCGATCATGCTCGATCCATAGAAGTATTGAAGATGCCAAT
GCCAGATGCAGCCCCGGTTTGAGTTAATACTCAGAGTAAGAGTCCGTGGA
TCACATCCCAAATGGCCTCCCAGCTAACTGCTATGATTATTGTAGATTAT
CGACCTCAATAATGTTCCACTCGTGAGCGGTACCGCTTTCGTCAAATGGC
GCCTACCGTCATCTAGTGCGCCTGAACACCATGGACATACAGATAAGGCG
ATCATCATAGACCATCGGGCATATTGGAATTACGAGAAGGTCCTGCAGGT
CAGGCTCACCATCGACCGCAACCAGACTTTACACGAATGCGAGTTGTATT
TCGAAATTATTCAAGAGTTTGCGTCAGGAGGGAACAACGAGAAGAATCTG
CTAGGAAGGATCAGACTCAACCTTTCCGAATATGTGGATAAGAGTGACGA
TGACGAGGGCATCGTCCGGAGATACTTGATGCAGGATAGCAAGATCAACA
GCACACTAAAAGTTGGTATAGCCACACGCCAAGTTGAAGGGGATCGGAAC
TACATTACGTATGTCATATATTATGCCGGAAGACGCTTTACTCCCTTCGA
GGAGCATATTGCTGATGACATTCAGGCCGCCTCTCAAATCAGCCATGGTC
TTTGGCGGAATCGCTGGGGTTGTATCCTCTGAACAAGGCGAACATGACGA
CCTGGGTCGGCTTCCCTCGATCAACACCCAGAGTCGCGAAGTGACAGATA
TGCAAGACATGTACCGCCGCACGCTGGCTGCGTCTTGGAATTCTCGGGCG
GACGATCTACCGGCCGACAAGCTGATCGAAGAACTGTTCTCCGGCGGCAT
TAGCTGGGCAGACGGCCATGATGCCCGTGCCGAGAAATCTATCGAGAGTC
AGGCAGATCGACTGTCACCACATGGGCGCACAAGCGTCAGGCAAGCTTCA
TCAGACAATCGATTGTCTCCTTCCAATTTTGAGAGGCGACCAAGGAGTTC
TTCAAGCAACCATTATCGCAATGATGTGAAAGGCACAGACTTTGCCCCAG
CTGTTGATCATACCCGGAAAGGCGGGAGCATAGAGCAGCAACTGTATGAC
AACCCCAAAGGCAAGGCTTGGAAAAACCGTACTTCGGAGTTTGAACTGTC
GGAGTTCGATGTGCGCGAGGATTTGCGGAGTTGGGAGGTCATGAACAAGG
AGTGATTCAGTATGGTTCTTCGTGGCGTTAAGCAGTCTCTTGTATAATAC
CCCTATGACTTTTACTCATGCCTCTGTTCTTCAAAATGTCTGCTTTCTCA
CTTGTGGCACCAAAATGTCGGGGTAGATAACTGCCCCATGTAAGCGTA
back to top

Coding sequence (CDS) from alignment at ch8:778180..779927-

>KJC3_011486-T2 ID=KJC3_011486-T2|Name=KJC3_011486-T2|organism=Aspergillus niger KJC3|type=CDS|length=3069bp|location=Sequence derived from alignment at ch8:778180..779927- (Aspergillus niger KJC3)
GCCGCCTCTCAAATCAGCCATGGTCTTTGGCGGAATCGCTGGGGTTGTAT
CCTCTGAACAAGGCGAACATGACGACCTGGGTCGGCTTCCCTCGATCAAC
ACCCAGAGTCGCGAAGTGACAGATATGCAAGACATGTACCGCCGCACGCT
GGCTGCGTCTTGGAATTCTCGGGCGGACGATCTACCGGCCGACAAGCTGA
TCGAAGAACTGTTCTCCGGCGGCATTAGCTGGGCAGACGGCCATGATGCC
CGTGCCGAGAAATCTATCGAGAGTCAGGCAGATCGACTGTCACCACATGG
GCGCACAAGCGTCAGGCAAGCTTCATCAGACAATCGATTGTCTCCTTCCA
ATTTTGAGAGGCGACCAAGGAGTTCTTCAAGCAACCATTATCGCAATGAT
GTGAAAGGCACAGACTTTGCCCCAGCTGTTGATCATACCCGGAAAGGCGG
GAGCATAGAGCAGCAACTGTATGACAACCCCAAAGGCAAGGCTTGGAAAA
ACCGTACTTCGGAGTTTGAACTGTCGGAGTTCGATGTGCGCGAGGATTTG
CGGAGTTGGGAGGTCATGAACAAGGAGTGAATTATCGACCTCAATAATGT
TCCACTCGTGAGCGGTACCGCTTTCGTCAAATGGCGCCTACCGTCATCTA
GTGCGCCTGAACACCATGGACATACAGATAAGGCGATCATCATAGACCAT
CGGGCATATTGGAATTACGAGAAGGTCCTGCAGGTCAGGCTCACCATCGA
CCGCAACCAGACTTTACACGAATGCGAGTTGTATTTCGAAATTATTCAAG
AGTTTGCGTCAGGAGGGAACAACGAGAAGAATCTGCTAGGAAGGATCAGA
CTCAACCTTTCCGAATATGTGGATAAGAGTGACGATGACGAGGGCATCGT
CCGGAGATACTTGATGCAGGATAGCAAGATCAACAGCACACTAAAAGTTG
GTATAGCCACACGCCAAGTTGAAGGGGATCGGAACTACATTACATGCAGC
CCCGGTTTGAGTTAATACTCAGAGCCGCCTCTCAAATCAGCCATGGTCTT
TGGCGGAATCGCTGGGGTTGTATCCTCTGAACAAGGCGAACATGACGACC
TGGGTCGGCTTCCCTCGATCAACACCCAGAGTCGCGAAGTGACAGATATG
CAAGACATGTACCGCCGCACGCTGGCTGCGTCTTGGAATTCTCGGGCGGA
CGATCTACCGGCCGACAAGCTGATCGAAGAACTGTTCTCCGGCGGCATTA
GCTGGGCAGACGGCCATGATGCCCGTGCCGAGAAATCTATCGAGAGTCAG
GCAGATCGACTGTCACCACATGGGCGCACAAGCGTCAGGCAAGCTTCATC
AGACAATCGATTGTCTCCTTCCAATTTTGAGAGGCGACCAAGGAGTTCTT
CAAGCAACCATTATCGCAATGATGTGAAAGGCACAGACTTTGCCCCAGCT
GTTGATCATACCCGGAAAGGCGGGAGCATAGAGCAGCAACTGTATGACAA
CCCCAAAGGCAAGGCTTGGAAAAACCGTACTTCGGAGTTTGAACTGTCGG
AGTTCGATGTGCGCGAGGATTTGCGGAGTTGGGAGGTCATGAACAAGGAG
TGAATTATCGACCTCAATAATGTTCCACTCGTGAGCGGTACCGCTTTCGT
CAAATGGCGCCTACCGTCATCTAGTGCGCCTGAACACCATGGACATACAG
ATAAGGCGATCATCATAGACCATCGGGCATATTGGAATTACGAGAAGGTC
CTGCAGGTCAGGCTCACCATCGACCGCAACCAGACTTTACACGAATGCGA
GTTGTATTTCGAAATTATTCAAGAGTTTGCGTCAGGAGGGAACAACGAGA
AGAATCTGCTAGGAAGGATCAGACTCAACCTTTCCGAATATGTGGATAAG
AGTGACGATGACGAGGGCATCGTCCGGAGATACTTGATGCAGGATAGCAA
GATCAACAGCACACTAAAAGTTGGTATAGCCACACGCCAAGTTGAAGGGG
ATCGGAACTACATTACATGCAGCCCCGGTTTGAGTTAATACTCAGAGCCG
CCTCTCAAATCAGCCATGGTCTTTGGCGGAATCGCTGGGGTTGTATCCTC
TGAACAAGGCGAACATGACGACCTGGGTCGGCTTCCCTCGATCAACACCC
AGAGTCGCGAAGTGACAGATATGCAAGACATGTACCGCCGCACGCTGGCT
GCGTCTTGGAATTCTCGGGCGGACGATCTACCGGCCGACAAGCTGATCGA
AGAACTGTTCTCCGGCGGCATTAGCTGGGCAGACGGCCATGATGCCCGTG
CCGAGAAATCTATCGAGAGTCAGGCAGATCGACTGTCACCACATGGGCGC
ACAAGCGTCAGGCAAGCTTCATCAGACAATCGATTGTCTCCTTCCAATTT
TGAGAGGCGACCAAGGAGTTCTTCAAGCAACCATTATCGCAATGATGTGA
AAGGCACAGACTTTGCCCCAGCTGTTGATCATACCCGGAAAGGCGGGAGC
ATAGAGCAGCAACTGTATGACAACCCCAAAGGCAAGGCTTGGAAAAACCG
TACTTCGGAGTTTGAACTGTCGGAGTTCGATGTGCGCGAGGATTTGCGGA
GTTGGGAGGTCATGAACAAGGAGTGAATTATCGACCTCAATAATGTTCCA
CTCGTGAGCGGTACCGCTTTCGTCAAATGGCGCCTACCGTCATCTAGTGC
GCCTGAACACCATGGACATACAGATAAGGCGATCATCATAGACCATCGGG
CATATTGGAATTACGAGAAGGTCCTGCAGGTCAGGCTCACCATCGACCGC
AACCAGACTTTACACGAATGCGAGTTGTATTTCGAAATTATTCAAGAGTT
TGCGTCAGGAGGGAACAACGAGAAGAATCTGCTAGGAAGGATCAGACTCA
ACCTTTCCGAATATGTGGATAAGAGTGACGATGACGAGGGCATCGTCCGG
AGATACTTGATGCAGGATAGCAAGATCAACAGCACACTAAAAGTTGGTAT
AGCCACACGCCAAGTTGAAGGGGATCGGAACTACATTACATGCAGCCCCG
GTTTGAGTTAATACTCAGA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_011486KJC3_011486Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011486-T2KJC3_011486-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011486-T2.cdsKJC3_011486-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011486-T2.utr3p1KJC3_011486-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011486-T2.exon4KJC3_011486-T2.exon4Aspergillus niger KJC3exon
KJC3_011486-T2.exon3KJC3_011486-T2.exon3Aspergillus niger KJC3exon
KJC3_011486-T2.exon2KJC3_011486-T2.exon2Aspergillus niger KJC3exon
KJC3_011486-T2.exon1KJC3_011486-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011486-T2.utr5p2KJC3_011486-T2.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_011486-T2.utr5p1KJC3_011486-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR019448
DBxrefPFAM:PF10358
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:778180..779927 -
Powered by Drupal