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KJC3_011536-T1, KJC3_011536-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011536-T1
Unique NameKJC3_011536-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:917535..920496+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011536-T1 ID=KJC3_011536-T1|Name=KJC3_011536-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2962bp|location=Sequence derived from alignment at ch8:917535..920496+ (Aspergillus niger KJC3)
GGAGGGCTCGAGCAAACAGCTGTGGCCCCCTGCGAAGCATTAACATATCA
ATTTCTCTAGTAAGCGATCGTATTGTTCGATCATAAATCACACACCATCA
TGGCTTCCAACGATCAGCCTCCAGCCAAAAGGCTGAAGAGCTCCAATCTC
CCGCCACAGCTGCGCGACGCAAAGCGCAAGGATATCGACAACTGGGAAAC
GAACCGAATGCTCACATCTGGTGTCGCCCAGAGACGCGATTTCGATGGCG
ACTTCATGCCCGAAGATGAAGAAGGCACCCGTGTTCATTTGCTGGTCCAT
GACCTCCGTCCGCCTTTCCTCGATGGCCGCACGATCTTCACCAAGCAGCT
CGAGCCCATCTCAGCTGTCCGAGACCCGCAGAGTGATATGGCAGTTTTCA
GTCGGAAAGGAAGCAAAGTGGTTCGCGAACGACGTCAGCAGCGGGAACGC
CAGAAGCAAGCGCAGGAGGCGACAACGATGGCAGGAACGGCGCTGGGAAA
CCTCATGGGTGTAAAGGAGGATGAGGGTGACAGTGCGGTCGCTATGCCCG
TGGAGGATGCCTATAAGAGCGGAAACAAGTTTGCCCAGCATCTGAAAAAG
GATGAAGGTGGACAAAGTTCGTTCAGCAAGAGCAAGACGCTCCGGGAGCA
GAGGGAATTCCTGCCGGCGTTTGCGGTCCGAGAGGATTTGTTGCGCGTCA
TTCGAGATAACCAGGTTGTGGTTGTGGTTGGTGAGACGGGGTCTGGAAAA
ACAACACAGCTGACGCAGTTCCTGCACGAGGACGGTTATTCGAAGTTTGG
CATGATCGGGTGCACACAACCTCGTCGAGTGGCAGCTATGAGTGTTGCCA
AGCGTGTCAGTGAGGAAATGGAGGTTGATCTTGGTGATGAAGTTGGCTAT
GCTATTCGTTTCGAAGATTGCACAGGCCCGAAGACGGTCATCAAGTACAT
GACTGATGGTGTTCTTCTACGAGAGTCACTTGTCCAGCAGGACCTTGACA
AGTATTCTTGTATCATCATGGATGAAGCGCATGAGAGAGCGCTGAACACA
GACGTGCTCATGGGTCTTCTCAAGAAGGTCCTAGCTCGACGCAGGGACTT
GAAGCTTATCGTCACATCGGCCACCATGAACGCAGAGCGCTTCTCCAGAT
TCTACGGTGGCGCACCGGAGTTTATCATCCCCGGAAGAACGTTTCCTGTC
GATGTTCACTTCTCGCGCACACCATGCGAGGACTATGTTGACAGCGCGGT
CAAGCAGGTCTTGGCCATCCACGTGTCGCAAGGTCCCGGTGATATTCTTG
TGTTTATGACAGGTCAAGAAGATATTGAAGCGACATGCGAGCTGGTTGAT
GAGCGGTTAAAGCTGCTGAACGACCCGCCAAAATTGAGCATTCTTCCCAT
TTACAGTCAGATGCCTGCCGAGCAACAGGCCAAAATTTTCGAACGGGCTG
AGCCTGGCGTGCGCAAAGTGATTGTTGCCACCAATATTGCTGAAACCAGT
CTGACAGTTGACGGTATCATGTTCGTCGTGGATTCGGGGTACTCCAAACT
TAAGGTGTACAACCCCAAGATGGGCATGGACACTCTGCAGATCACGCCAA
TATCACAGGCCAATGCCAACCAGCGTTCTGGCCGAGCAGGACGTACGGGA
CCGGGCAAGGCATATCGTCTGTATACCGAAGTGGCGTATAAGAACGAGCT
ATACCTGCAAACGATTCCGGAAATCCAGCGGACCAGTCTTTCCAACACCG
TCCTTCTCCTCAAATCCCTTGGCGTCAAAGACCTCCTTGACTTTGATTTT
ATGGACCCCCCACCCCAGGAGACAATCACCACATCCCTCTTCGAGCTTTG
GTCACTCGGAGCACTCGACAATCTCGGCGACCTCACACCACTAGGACGTC
GAATGACACCATTCCCAATGGACCCCCCGCTCGCGAAGCTCATCATCACG
GCCGCAGAAACCTACGGCTGCAGCGAGGAAATGCTAACCATCGTATCTAT
GCTATCCGTCCCCAGCGTCTTCTACCGTCCCAGAGAGCGACAAGAAGAAT
CCGACGCCGCGCGCGAGAAATTCTTCGTCCCAGAATCCGACCACCTCACT
TTACTCCACGTGTACACGCAATGGAAAGCAAACGGCTACTCCGACGGCTG
GTGCACACGCCACTTCCTCCACGCCAAGGCACTGCGGCGGGCGCGCGAAG
TCCGCGACCAGCTGCACGACATCATGACGGTGCAGAAGATGCCCTTGGTC
AGTTGCGGCACTGACTGGGACGAGATCCGCAAATGCATCTGCTCGGGTTT
CTACCACCAAGCCGCGCGCGTCAAGGGTATCGGCGAGTTCCTCAACCTCC
GAACCAGCGTCAGCATGCAACTCCACCCGACCAGTGCTCTCTACGGTCTG
GGATATGTCCCGGAGTACGTGGTCTACCACGAATTGATCCTCACCAGCAA
GGAGTACATGTCTACCGTGACTGCTGTAGATCCACATGTAAGGTCCCCAC
CCTATCCCATATACAATAAATACTAACGACATCCGGTAATAGTGGCTCGC
CGAACTCGGAGGTGTCTTCTACTCCGTCAAAGAAAAGGGATATTCTCAGC
GCGAGCGCCGCATCACCGAACAAGAGTTCAACCGGCGCGTGGAGATCGAG
ACTCAGATGGCGGCGGACCGCGAACGCGCCGCAGCCGAGAAGCAGCGCGA
GGCGGAGAGGAACGATCCATCCAGACGCAGAAAGGAGATTGAAGTGGGGT
CTGTTGTGCGGAGGCCTGTCGCGACAGCAAGACGTGTAGGGGGTGTGACG
GCCTCGAGTAGTGGTGGTGGTGCGCGCAACGGTGGAAGTGGAGGCGGAAG
CGTGGTTAAGAAGCCGCAGATTAAGCGGAAACCAGGACGGGCCTTTTGAT
TATACTAGAATATCGAATATACTATACCCAGGGATATATTGAATAGATTA
CGAGTTGATACT
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Coding sequence (CDS) from alignment at ch8:917535..920496+

>KJC3_011536-T1 ID=KJC3_011536-T1|Name=KJC3_011536-T1|organism=Aspergillus niger KJC3|type=CDS|length=5490bp|location=Sequence derived from alignment at ch8:917535..920496+ (Aspergillus niger KJC3)
ATGGCTTCCAACGATCAGCCTCCAGCCAAAAGGCTGAAGAGCTCCAATCT
CCCGCCACAGCTGCGCGACGCAAAGCGCAAGGATATCGACAACTGGGAAA
CGAACCGAATGCTCACATCTGGTGTCGCCCAGAGACGCGATTTCGATGGC
GACTTCATGCCCGAAGATGAAGAAGGCACCCGTGTTCATTTGCTGGTCCA
TGACCTCCGTCCGCCTTTCCTCGATGGCCGCACGATCTTCACCAAGCAGC
TCGAGCCCATCTCAGCTGTCCGAGACCCGCAGAGTGATATGGCAGTTTTC
AGTCGGAAAGGAAGCAAAGTGGTTCGCGAACGACGTCAGCAGCGGGAACG
CCAGAAGCAAGCGCAGGAGGCGACAACGATGGCAGGAACGGCGCTGGGAA
ACCTCATGGGTGTAAAGGAGGATGAGGGTGACAGTGCGGTCGCTATGCCC
GTGGAGGATGCCTATAAGAGCGGAAACAAGTTTGCCCAGCATCTGAAAAA
GGATGAAGGTGGACAAAGTTCGTTCAGCAAGAGCAAGACGCTCCGGGAGC
AGAGGGAATTCCTGCCGGCGTTTGCGGTCCGAGAGGATTTGTTGCGCGTC
ATTCGAGATAACCAGGTTGTGGTTGTGGTTGGTGAGACGGGGTCTGGAAA
AACAACACAGCTGACGCAGTTCCTGCACGAGGACGGTTATTCGAAGTTTG
GCATGATCGGGTGCACACAACCTCGTCGAGTGGCAGCTATGAGTGTTGCC
AAGCGTGTCAGTGAGGAAATGGAGGTTGATCTTGGTGATGAAGTTGGCTA
TGCTATTCGTTTCGAAGATTGCACAGGCCCGAAGACGGTCATCAAGTACA
TGACTGATGGTGTTCTTCTACGAGAGTCACTTGTCCAGCAGGACCTTGAC
AAGTATTCTTGTATCATCATGGATGAAGCGCATGAGAGAGCGCTGAACAC
AGACGTGCTCATGGGTCTTCTCAAGAAGGTCCTAGCTCGACGCAGGGACT
TGAAGCTTATCGTCACATCGGCCACCATGAACGCAGAGCGCTTCTCCAGA
TTCTACGGTGGCGCACCGGAGTTTATCATCCCCGGAAGAACGTTTCCTGT
CGATGTTCACTTCTCGCGCACACCATGCGAGGACTATGTTGACAGCGCGG
TCAAGCAGGTCTTGGCCATCCACGTGTCGCAAGGTCCCGGTGATATTCTT
GTGTTTATGACAGGTCAAGAAGATATTGAAGCGACATGCGAGCTGGTTGA
TGAGCGGTTAAAGCTGCTGAACGACCCGCCAAAATTGAGCATTCTTCCCA
TTTACAGTCAGATGCCTGCCGAGCAACAGGCCAAAATTTTCGAACGGGCT
GAGCCTGGCGTGCGCAAAGTGATTGTTGCCACCAATATTGCTGAAACCAG
TCTGACAGTTGACGGTATCATGTTCGTCGTGGATTCGGGGTACTCCAAAC
TTAAGGTGTACAACCCCAAGATGGGCATGGACACTCTGCAGATCACGCCA
ATATCACAGGCCAATGCCAACCAGCGTTCTGGCCGAGCAGGACGTACGGG
ACCGGGCAAGGCATATCGTCTGTATACCGAAGTGGCGTATAAGAACGAGC
TATACCTGCAAACGATTCCGGAAATCCAGCGGACCAGTCTTTCCAACACC
GTCCTTCTCCTCAAATCCCTTGGCGTCAAAGACCTCCTTGACTTTGATTT
TATGGACCCCCCACCCCAGGAGACAATCACCACATCCCTCTTCGAGCTTT
GGTCACTCGGAGCACTCGACAATCTCGGCGACCTCACACCACTAGGACGT
CGAATGACACCATTCCCAATGGACCCCCCGCTCGCGAAGCTCATCATCAC
GGCCGCAGAAACCTACGGCTGCAGCGAGGAAATGCTAACCATCGTATCTA
TGCTATCCGTCCCCAGCGTCTTCTACCGTCCCAGAGAGCGACAAGAAGAA
TCCGACGCCGCGCGCGAGAAATTCTTCGTCCCAGAATCCGACCACCTCAC
TTTACTCCACGTGTACACGCAATGGAAAGCAAACGGCTACTCCGACGGCT
GGTGCACACGCCACTTCCTCCACGCCAAGGCACTGCGGCGGGCGCGCGAA
GTCCGCGACCAGCTGCACGACATCATGACGGTGCAGAAGATGCCCTTGGT
CAGTTGCGGCACTGACTGGGACGAGATCCGCAAATGCATCTGCTCGGGTT
TCTACCACCAAGCCGCGCGCGTCAAGGGTATCGGCGAGTTCCTCAACCTC
CGAACCAGCGTCAGCATGCAACTCCACCCGACCAGTGCTCTCTACGGTCT
GGGATATGTCCCGGAGTACGTGGTCTACCACGAATTGATCCTCACCAGCA
AGGAGTACATGTCTACCGTGACTGCTGTAGATCCACATTGGCTCGCCGAA
CTCGGAGGTGTCTTCTACTCCGTCAAAGAAAAGGGATATTCTCAGCGCGA
GCGCCGCATCACCGAACAAGAGTTCAACCGGCGCGTGGAGATCGAGACTC
AGATGGCGGCGGACCGCGAACGCGCCGCAGCCGAGAAGCAGCGCGAGGCG
GAGAGGAACGATCCATCCAGACGCAGAAAGGAGATTGAAGTGGGGTCTGT
TGTGCGGAGGCCTGTCGCGACAGCAAGACGTGTAGGGGGTGTGACGGCCT
CGAGTAGTGGTGGTGGTGCGCGCAACGGTGGAAGTGGAGGCGGAAGCGTG
GTTAAGAAGCCGCAGATTAAGCGGAAACCAGGACGGGCCTTTTGAATGGC
TTCCAACGATCAGCCTCCAGCCAAAAGGCTGAAGAGCTCCAATCTCCCGC
CACAGCTGCGCGACGCAAAGCGCAAGGATATCGACAACTGGGAAACGAAC
CGAATGCTCACATCTGGTGTCGCCCAGAGACGCGATTTCGATGGCGACTT
CATGCCCGAAGATGAAGAAGGCACCCGTGTTCATTTGCTGGTCCATGACC
TCCGTCCGCCTTTCCTCGATGGCCGCACGATCTTCACCAAGCAGCTCGAG
CCCATCTCAGCTGTCCGAGACCCGCAGAGTGATATGGCAGTTTTCAGTCG
GAAAGGAAGCAAAGTGGTTCGCGAACGACGTCAGCAGCGGGAACGCCAGA
AGCAAGCGCAGGAGGCGACAACGATGGCAGGAACGGCGCTGGGAAACCTC
ATGGGTGTAAAGGAGGATGAGGGTGACAGTGCGGTCGCTATGCCCGTGGA
GGATGCCTATAAGAGCGGAAACAAGTTTGCCCAGCATCTGAAAAAGGATG
AAGGTGGACAAAGTTCGTTCAGCAAGAGCAAGACGCTCCGGGAGCAGAGG
GAATTCCTGCCGGCGTTTGCGGTCCGAGAGGATTTGTTGCGCGTCATTCG
AGATAACCAGGTTGTGGTTGTGGTTGGTGAGACGGGGTCTGGAAAAACAA
CACAGCTGACGCAGTTCCTGCACGAGGACGGTTATTCGAAGTTTGGCATG
ATCGGGTGCACACAACCTCGTCGAGTGGCAGCTATGAGTGTTGCCAAGCG
TGTCAGTGAGGAAATGGAGGTTGATCTTGGTGATGAAGTTGGCTATGCTA
TTCGTTTCGAAGATTGCACAGGCCCGAAGACGGTCATCAAGTACATGACT
GATGGTGTTCTTCTACGAGAGTCACTTGTCCAGCAGGACCTTGACAAGTA
TTCTTGTATCATCATGGATGAAGCGCATGAGAGAGCGCTGAACACAGACG
TGCTCATGGGTCTTCTCAAGAAGGTCCTAGCTCGACGCAGGGACTTGAAG
CTTATCGTCACATCGGCCACCATGAACGCAGAGCGCTTCTCCAGATTCTA
CGGTGGCGCACCGGAGTTTATCATCCCCGGAAGAACGTTTCCTGTCGATG
TTCACTTCTCGCGCACACCATGCGAGGACTATGTTGACAGCGCGGTCAAG
CAGGTCTTGGCCATCCACGTGTCGCAAGGTCCCGGTGATATTCTTGTGTT
TATGACAGGTCAAGAAGATATTGAAGCGACATGCGAGCTGGTTGATGAGC
GGTTAAAGCTGCTGAACGACCCGCCAAAATTGAGCATTCTTCCCATTTAC
AGTCAGATGCCTGCCGAGCAACAGGCCAAAATTTTCGAACGGGCTGAGCC
TGGCGTGCGCAAAGTGATTGTTGCCACCAATATTGCTGAAACCAGTCTGA
CAGTTGACGGTATCATGTTCGTCGTGGATTCGGGGTACTCCAAACTTAAG
GTGTACAACCCCAAGATGGGCATGGACACTCTGCAGATCACGCCAATATC
ACAGGCCAATGCCAACCAGCGTTCTGGCCGAGCAGGACGTACGGGACCGG
GCAAGGCATATCGTCTGTATACCGAAGTGGCGTATAAGAACGAGCTATAC
CTGCAAACGATTCCGGAAATCCAGCGGACCAGTCTTTCCAACACCGTCCT
TCTCCTCAAATCCCTTGGCGTCAAAGACCTCCTTGACTTTGATTTTATGG
ACCCCCCACCCCAGGAGACAATCACCACATCCCTCTTCGAGCTTTGGTCA
CTCGGAGCACTCGACAATCTCGGCGACCTCACACCACTAGGACGTCGAAT
GACACCATTCCCAATGGACCCCCCGCTCGCGAAGCTCATCATCACGGCCG
CAGAAACCTACGGCTGCAGCGAGGAAATGCTAACCATCGTATCTATGCTA
TCCGTCCCCAGCGTCTTCTACCGTCCCAGAGAGCGACAAGAAGAATCCGA
CGCCGCGCGCGAGAAATTCTTCGTCCCAGAATCCGACCACCTCACTTTAC
TCCACGTGTACACGCAATGGAAAGCAAACGGCTACTCCGACGGCTGGTGC
ACACGCCACTTCCTCCACGCCAAGGCACTGCGGCGGGCGCGCGAAGTCCG
CGACCAGCTGCACGACATCATGACGGTGCAGAAGATGCCCTTGGTCAGTT
GCGGCACTGACTGGGACGAGATCCGCAAATGCATCTGCTCGGGTTTCTAC
CACCAAGCCGCGCGCGTCAAGGGTATCGGCGAGTTCCTCAACCTCCGAAC
CAGCGTCAGCATGCAACTCCACCCGACCAGTGCTCTCTACGGTCTGGGAT
ATGTCCCGGAGTACGTGGTCTACCACGAATTGATCCTCACCAGCAAGGAG
TACATGTCTACCGTGACTGCTGTAGATCCACATTGGCTCGCCGAACTCGG
AGGTGTCTTCTACTCCGTCAAAGAAAAGGGATATTCTCAGCGCGAGCGCC
GCATCACCGAACAAGAGTTCAACCGGCGCGTGGAGATCGAGACTCAGATG
GCGGCGGACCGCGAACGCGCCGCAGCCGAGAAGCAGCGCGAGGCGGAGAG
GAACGATCCATCCAGACGCAGAAAGGAGATTGAAGTGGGGTCTGTTGTGC
GGAGGCCTGTCGCGACAGCAAGACGTGTAGGGGGTGTGACGGCCTCGAGT
AGTGGTGGTGGTGCGCGCAACGGTGGAAGTGGAGGCGGAAGCGTGGTTAA
GAAGCCGCAGATTAAGCGGAAACCAGGACGGGCCTTTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0004386helicase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PRP16KJC3_011536Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011536-T1.utr5p1KJC3_011536-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011536-T1.exon1KJC3_011536-T1.exon1Aspergillus niger KJC3exon
KJC3_011536-T1.exon2KJC3_011536-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011536-T1.cdsKJC3_011536-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011536-T1.utr3p1KJC3_011536-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011536-T1KJC3_011536-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR002464
DBxrefInterPro:IPR011545
DBxrefInterPro:IPR011709
DBxrefInterPro:IPR001650
DBxrefInterPro:IPR007502
DBxrefInterPro:IPR014001
DBxrefPFAM:PF07717
DBxrefPFAM:PF00271
DBxrefPFAM:PF04408
DBxrefPFAM:PF00270
ProductDEAH-box RNA helicase prp16
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:917535..920496 +
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