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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:947736..949671- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011546-T1 ID=KJC3_011546-T1|Name=KJC3_011546-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1936bp|location=Sequence derived from alignment at ch8:947736..949671- (Aspergillus niger KJC3)
CTACACGTGACGCAACACTTCAACTCCGCGCTGGTTGGCGACCAAGTGAG
CTGCTTCATCATCCCATCACCTTTCTTTCACTTCACACCAAGACAGACTC
AATCATTATGGGTAAAAAGAGACGCGGTCCGACGCTAGATGAGCTTCTGG
CTCGTCCATGGTGCTACTACTGTGAGCGCGACTTTGATGATTTGAAGATT
CTCATATCTCACCAAAAGGCCAAGCACTTCAAGTGCGAGCGCTGCGGGCG
CCGGCTGAACACAGCAGGAGGTAGGTAATCCAATGCGCTGTGGGTGATAC
CTACTAACAGCACAGGATTGTCGGTGCACATGAGCCAAGTCCACAAGGAG
CAGCTTTCGGCGGTCGACAATGCTCTTCCCAACCGATCCAGCCTCGACGT
CGAGATCTTCGGCATGGAGGGCGTCCCGGAAGACATCATCCAGTCGCACA
ACCAGCGCGTAGCCACCCAGTTCCAACAGGCAGAGGCCGAACGGCAGGCC
GTGACGGGCAATCCGCCTCCGGGAACCGGCGTCGGCGGACAGCCAGCAAA
GAAGCCTAAGCTGGAGAGCGTGTCGGATCTGAAGAAGCGACTGGCGGAGC
ACAAGGCTAAGAAGGCGGAAGCACGTACTGGAGGTAGCAGTGGTGAAGCT
ACCCCAGTGGGTGCAGGACAGACGCCGAACATGGGCGGATTCGTGAGTGT
TAATCTCTCATATTGTAGGTAACGCGACTAACAATGATGCAGGGTCAGCC
TGCTCCTGCTGCTGCCGCGCCCGCCGCAGCAACCACTACCTCCTCACAAT
TCTCTTTCCCTCAACCATACGGCACTGCCTCTCCTTATCCTCAAACCGCC
AGCCCTGTCTATCCGAACTTCTCCCCCGGACAGCCACAATTCCCTCCCAA
TGCACAGTACCCTCCGGCGGGATACTCACCGCAGCCCTTCCAGGGCACGC
CGGGAGCGTCGTATGGCACTACTCCACCGGCATTCCCGGCACAACCTCCA
ACCCATACTCCTCCACAGACGACTGGAGCATTCCCGCCACGGTCGGGCAG
CCTTCCTATGCCTCCTGGTCTGCCGCAGCGACCGGCCGTGGCAGCGCCGC
CGGTCAACGCGTATCAGATGCAACAGATGCACATGGGTCAGGCGCCAGCT
TTGAATGGCGGTGAAACGACGCAAGCGCCGACAGACACGATCTCGACATC
GGTGGACGACCTCATCTCGGGAGCCGCGAAGCAAGCGGAGACGACAGCCG
ACAAGAAGGGCGAGGAGAAGCCAAAGAAGGACAAGTCGAAGGCCGTGCGA
CTAGTGTATTCGGACAACGAGACGAGTCCGGAGGAGAAGATGGCACAGCT
GGCAAGGTACGCATTTGTTCCCGAGCAGAAGGGGGAGACGGTGCTGGAGG
AAGTGCCGGCATCAGTGGTGACGGGGACGACGCGAGAGATGGATACGGTG
GAGGATGCAGCGGATCGGTGAGCCCGTCAGCCAGACGGTATATCGGCTTT
ACGAGCATGCGCATACTTGGGAAGACAGCGACAGAGACAGGGGATCGGAT
CAAGCAGCTAAGTTTCAGTTTCTTGCACGATTGGAAATGTCTCTTACAGT
GTAGGGCGGGCAAGCGAGCGACAGCGAGACGAACCGTAGCAGAAGTGGTG
GACAGACAGACAGACGGACGGACAGGACCATGATTTCCAAGAAAAAAGAA
AAGAAAAGAAACTGTAAGTTCACATCGAGCAGGTAGGCTACATACAGACT
ACACCATAATCATACAGCTTATAGCTAGCTATCTGTATACACCGTATATG
AACACCATCCATTCTTCATTCATCTCATCCATGAAAATAGTAAACGTATA
TCATACACCAAAACCCCCCCCCCTCTTCCTCACCACCAGTAAATCAATCA
AATCAAACCAATCAATCACCTACCCTCTCCCCCTCT back to topCoding sequence (CDS) from alignment at ch8:947736..949671- >KJC3_011546-T1 ID=KJC3_011546-T1|Name=KJC3_011546-T1|organism=Aspergillus niger KJC3|type=CDS|length=3807bp|location=Sequence derived from alignment at ch8:947736..949671- (Aspergillus niger KJC3)
GGTCAGCCTGCTCCTGCTGCTGCCGCGCCCGCCGCAGCAACCACTACCTC
CTCACAATTCTCTTTCCCTCAACCATACGGCACTGCCTCTCCTTATCCTC
AAACCGCCAGCCCTGTCTATCCGAACTTCTCCCCCGGACAGCCACAATTC
CCTCCCAATGCACAGTACCCTCCGGCGGGATACTCACCGCAGCCCTTCCA
GGGCACGCCGGGAGCGTCGTATGGCACTACTCCACCGGCATTCCCGGCAC
AACCTCCAACCCATACTCCTCCACAGACGACTGGAGCATTCCCGCCACGG
TCGGGCAGCCTTCCTATGCCTCCTGGTCTGCCGCAGCGACCGGCCGTGGC
AGCGCCGCCGGTCAACGCGTATCAGATGCAACAGATGCACATGGGTCAGG
CGCCAGCTTTGAATGGCGGTGAAACGACGCAAGCGCCGACAGACACGATC
TCGACATCGGTGGACGACCTCATCTCGGGAGCCGCGAAGCAAGCGGAGAC
GACAGCCGACAAGAAGGGCGAGGAGAAGCCAAAGAAGGACAAGTCGAAGG
CCGTGCGACTAGTGTATTCGGACAACGAGACGAGTCCGGAGGAGAAGATG
GCACAGCTGGCAAGGTACGCATTTGTTCCCGAGCAGAAGGGGGAGACGGT
GCTGGAGGAAGTGCCGGCATCAGTGGTGACGGGGACGACGCGAGAGATGG
ATACGGTGGAGGATGCAGCGGATCGGTGAGATTGTCGGTGCACATGAGCC
AAGTCCACAAGGAGCAGCTTTCGGCGGTCGACAATGCTCTTCCCAACCGA
TCCAGCCTCGACGTCGAGATCTTCGGCATGGAGGGCGTCCCGGAAGACAT
CATCCAGTCGCACAACCAGCGCGTAGCCACCCAGTTCCAACAGGCAGAGG
CCGAACGGCAGGCCGTGACGGGCAATCCGCCTCCGGGAACCGGCGTCGGC
GGACAGCCAGCAAAGAAGCCTAAGCTGGAGAGCGTGTCGGATCTGAAGAA
GCGACTGGCGGAGCACAAGGCTAAGAAGGCGGAAGCACGTACTGGAGGTA
GCAGTGGTGAAGCTACCCCAGTGGGTGCAGGACAGACGCCGAACATGGGC
GGATTCATGGGTAAAAAGAGACGCGGTCCGACGCTAGATGAGCTTCTGGC
TCGTCCATGGTGCTACTACTGTGAGCGCGACTTTGATGATTTGAAGATTC
TCATATCTCACCAAAAGGCCAAGCACTTCAAGTGCGAGCGCTGCGGGCGC
CGGCTGAACACAGCAGGAGGGTCAGCCTGCTCCTGCTGCTGCCGCGCCCG
CCGCAGCAACCACTACCTCCTCACAATTCTCTTTCCCTCAACCATACGGC
ACTGCCTCTCCTTATCCTCAAACCGCCAGCCCTGTCTATCCGAACTTCTC
CCCCGGACAGCCACAATTCCCTCCCAATGCACAGTACCCTCCGGCGGGAT
ACTCACCGCAGCCCTTCCAGGGCACGCCGGGAGCGTCGTATGGCACTACT
CCACCGGCATTCCCGGCACAACCTCCAACCCATACTCCTCCACAGACGAC
TGGAGCATTCCCGCCACGGTCGGGCAGCCTTCCTATGCCTCCTGGTCTGC
CGCAGCGACCGGCCGTGGCAGCGCCGCCGGTCAACGCGTATCAGATGCAA
CAGATGCACATGGGTCAGGCGCCAGCTTTGAATGGCGGTGAAACGACGCA
AGCGCCGACAGACACGATCTCGACATCGGTGGACGACCTCATCTCGGGAG
CCGCGAAGCAAGCGGAGACGACAGCCGACAAGAAGGGCGAGGAGAAGCCA
AAGAAGGACAAGTCGAAGGCCGTGCGACTAGTGTATTCGGACAACGAGAC
GAGTCCGGAGGAGAAGATGGCACAGCTGGCAAGGTACGCATTTGTTCCCG
AGCAGAAGGGGGAGACGGTGCTGGAGGAAGTGCCGGCATCAGTGGTGACG
GGGACGACGCGAGAGATGGATACGGTGGAGGATGCAGCGGATCGGTGAGA
TTGTCGGTGCACATGAGCCAAGTCCACAAGGAGCAGCTTTCGGCGGTCGA
CAATGCTCTTCCCAACCGATCCAGCCTCGACGTCGAGATCTTCGGCATGG
AGGGCGTCCCGGAAGACATCATCCAGTCGCACAACCAGCGCGTAGCCACC
CAGTTCCAACAGGCAGAGGCCGAACGGCAGGCCGTGACGGGCAATCCGCC
TCCGGGAACCGGCGTCGGCGGACAGCCAGCAAAGAAGCCTAAGCTGGAGA
GCGTGTCGGATCTGAAGAAGCGACTGGCGGAGCACAAGGCTAAGAAGGCG
GAAGCACGTACTGGAGGTAGCAGTGGTGAAGCTACCCCAGTGGGTGCAGG
ACAGACGCCGAACATGGGCGGATTCATGGGTAAAAAGAGACGCGGTCCGA
CGCTAGATGAGCTTCTGGCTCGTCCATGGTGCTACTACTGTGAGCGCGAC
TTTGATGATTTGAAGATTCTCATATCTCACCAAAAGGCCAAGCACTTCAA
GTGCGAGCGCTGCGGGCGCCGGCTGAACACAGCAGGAGGGTCAGCCTGCT
CCTGCTGCTGCCGCGCCCGCCGCAGCAACCACTACCTCCTCACAATTCTC
TTTCCCTCAACCATACGGCACTGCCTCTCCTTATCCTCAAACCGCCAGCC
CTGTCTATCCGAACTTCTCCCCCGGACAGCCACAATTCCCTCCCAATGCA
CAGTACCCTCCGGCGGGATACTCACCGCAGCCCTTCCAGGGCACGCCGGG
AGCGTCGTATGGCACTACTCCACCGGCATTCCCGGCACAACCTCCAACCC
ATACTCCTCCACAGACGACTGGAGCATTCCCGCCACGGTCGGGCAGCCTT
CCTATGCCTCCTGGTCTGCCGCAGCGACCGGCCGTGGCAGCGCCGCCGGT
CAACGCGTATCAGATGCAACAGATGCACATGGGTCAGGCGCCAGCTTTGA
ATGGCGGTGAAACGACGCAAGCGCCGACAGACACGATCTCGACATCGGTG
GACGACCTCATCTCGGGAGCCGCGAAGCAAGCGGAGACGACAGCCGACAA
GAAGGGCGAGGAGAAGCCAAAGAAGGACAAGTCGAAGGCCGTGCGACTAG
TGTATTCGGACAACGAGACGAGTCCGGAGGAGAAGATGGCACAGCTGGCA
AGGTACGCATTTGTTCCCGAGCAGAAGGGGGAGACGGTGCTGGAGGAAGT
GCCGGCATCAGTGGTGACGGGGACGACGCGAGAGATGGATACGGTGGAGG
ATGCAGCGGATCGGTGAGATTGTCGGTGCACATGAGCCAAGTCCACAAGG
AGCAGCTTTCGGCGGTCGACAATGCTCTTCCCAACCGATCCAGCCTCGAC
GTCGAGATCTTCGGCATGGAGGGCGTCCCGGAAGACATCATCCAGTCGCA
CAACCAGCGCGTAGCCACCCAGTTCCAACAGGCAGAGGCCGAACGGCAGG
CCGTGACGGGCAATCCGCCTCCGGGAACCGGCGTCGGCGGACAGCCAGCA
AAGAAGCCTAAGCTGGAGAGCGTGTCGGATCTGAAGAAGCGACTGGCGGA
GCACAAGGCTAAGAAGGCGGAAGCACGTACTGGAGGTAGCAGTGGTGAAG
CTACCCCAGTGGGTGCAGGACAGACGCCGAACATGGGCGGATTCATGGGT
AAAAAGAGACGCGGTCCGACGCTAGATGAGCTTCTGGCTCGTCCATGGTG
CTACTACTGTGAGCGCGACTTTGATGATTTGAAGATTCTCATATCTCACC
AAAAGGCCAAGCACTTCAAGTGCGAGCGCTGCGGGCGCCGGCTGAACACA
GCAGGAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011546-T1.utr3p1 | KJC3_011546-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011546-T1.utr5p1 | KJC3_011546-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036236 |
| DBxref | InterPro:IPR003656 |
| DBxref | InterPro:IPR013087 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:947736..949671 - |
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