You are here

Home

KJC3_011564-T1, KJC3_011564-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011564-T1
Unique NameKJC3_011564-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:1000573..1001789+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011564-T1 ID=KJC3_011564-T1|Name=KJC3_011564-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1217bp|location=Sequence derived from alignment at ch8:1000573..1001789+ (Aspergillus niger KJC3)
CCCGACTCCCCTTCAACGACGACAACGACCGACCCATCCCCCTCCACCCC
TCCCTCGTCCCTCTCTTCGATTCCCCGTTCGAGGTTCAACAAGTCGCAAA
AATGGGTGGTGTCACCGTTCGCGATGTCGACGTAAGTCATGTCATGTCAA
CTTTTGGAGATTGGTTGGTCGGTGCGGAATGGATGGGATATATGGCATGG
CATGGTATGGCACGGCACGATCAGGACAAAATGAGAAGAAAAGAACGACA
GGAATGGGAAATACACATGGTATCGGCATTCAACGGAGCAGAAATCGACA
TTTTGATATCGAATTTGGGCGCATGCAGCAAAGCAAGCAAGGCTGGGTAC
ATATACTCTGGGCATGAGATGTGATGAGTTTATGGGCTTGGAATGGGAAT
ACGCAATGCACGACTACCACGATTGTGTACTCCAGCCATATATTATGGAA
TATGGGAATTCTGGATGAAATGGATGTTATGGAGTCAGGAACGAACTGGA
ATTCCTGCCGCCGCGACACGCAGAGAAATGTCCAGATTTGCCGATACGTG
CCGTGCCATGCTATATGCCATATCATGCCTGAATGCGCACCTGCCAGACA
ATCTTCAATACACGATGCCTGTGGACGGATCAGCTAACAGGTTTCCTTTT
CCATGGTTATAGGCGCAGAAGTTCATCGCTGCTTACTCTGCTTTCCTGAA
GCGTCAGGGAAAGCTCCCCATTCCTGGTTCGTGCACACCGGATTTCATCG
AAAAGTCGTAACAATCAGATCAAAACTAATACGGTTATTAGGATGGGTTG
ACACTGTCAAGACCTCCTGCTCTAACGAGCTCCCTCCCCAGGACGCCGAC
TGGTACGACAACTGCCATTGATCCAATACTTCGAAAAAAAAAAAAAAAAA
CAGCGTGATTAATAGAAATCTGCAATAGGTACTACGTCCGCGCCGCTGCC
GTCGCTCGCCACATCTACATGCGCAAGACCGTCGGTGTTGGCCGTCTCCG
CAAGGTCCACGGTTCCACCAAGAACCGCGGCTCCCGCCCCGCCCACCACG
TCGATGCCTCCGGCTCCGTCGACCGTAAGGTCATCCAGTCCCTCGAGAAG
ATCGGTGTCCTCGAGCACGATGAGGAGAAGGGTGGCCGCCGCATCACCCA
GAGCGGCCAGCGTGATCTTGACCGTATCGCCAAGACCACCGTTGACGAGG
AGGAGGACGAGGAGTAA
back to top

Coding sequence (CDS) from alignment at ch8:1000573..1001789+

>KJC3_011564-T1 ID=KJC3_011564-T1|Name=KJC3_011564-T1|organism=Aspergillus niger KJC3|type=CDS|length=1776bp|location=Sequence derived from alignment at ch8:1000573..1001789+ (Aspergillus niger KJC3)
ATGGGTGGTGTCACCGTTCGCGATGTCGACGCGCAGAAGTTCATCGCTGC
TTACTCTGCTTTCCTGAAGCGTCAGGGAAAGCTCCCCATTCCTGGATGGG
TTGACACTGTCAAGACCTCCTGCTCTAACGAGCTCCCTCCCCAGGACGCC
GACTGGTACTACGTCCGCGCCGCTGCCGTCGCTCGCCACATCTACATGCG
CAAGACCGTCGGTGTTGGCCGTCTCCGCAAGGTCCACGGTTCCACCAAGA
ACCGCGGCTCCCGCCCCGCCCACCACGTCGATGCCTCCGGCTCCGTCGAC
CGTAAGGTCATCCAGTCCCTCGAGAAGATCGGTGTCCTCGAGCACGATGA
GGAGAAGGGTGGCCGCCGCATCACCCAGAGCGGCCAGCGTGATCTTGACC
GTATCGCCAAGACCACCGTTGACGAGGAGGAGGACGAGGAGTAAATGGGT
GGTGTCACCGTTCGCGATGTCGACGCGCAGAAGTTCATCGCTGCTTACTC
TGCTTTCCTGAAGCGTCAGGGAAAGCTCCCCATTCCTGGATGGGTTGACA
CTGTCAAGACCTCCTGCTCTAACGAGCTCCCTCCCCAGGACGCCGACTGG
TACTACGTCCGCGCCGCTGCCGTCGCTCGCCACATCTACATGCGCAAGAC
CGTCGGTGTTGGCCGTCTCCGCAAGGTCCACGGTTCCACCAAGAACCGCG
GCTCCCGCCCCGCCCACCACGTCGATGCCTCCGGCTCCGTCGACCGTAAG
GTCATCCAGTCCCTCGAGAAGATCGGTGTCCTCGAGCACGATGAGGAGAA
GGGTGGCCGCCGCATCACCCAGAGCGGCCAGCGTGATCTTGACCGTATCG
CCAAGACCACCGTTGACGAGGAGGAGGACGAGGAGTAAATGGGTGGTGTC
ACCGTTCGCGATGTCGACGCGCAGAAGTTCATCGCTGCTTACTCTGCTTT
CCTGAAGCGTCAGGGAAAGCTCCCCATTCCTGGATGGGTTGACACTGTCA
AGACCTCCTGCTCTAACGAGCTCCCTCCCCAGGACGCCGACTGGTACTAC
GTCCGCGCCGCTGCCGTCGCTCGCCACATCTACATGCGCAAGACCGTCGG
TGTTGGCCGTCTCCGCAAGGTCCACGGTTCCACCAAGAACCGCGGCTCCC
GCCCCGCCCACCACGTCGATGCCTCCGGCTCCGTCGACCGTAAGGTCATC
CAGTCCCTCGAGAAGATCGGTGTCCTCGAGCACGATGAGGAGAAGGGTGG
CCGCCGCATCACCCAGAGCGGCCAGCGTGATCTTGACCGTATCGCCAAGA
CCACCGTTGACGAGGAGGAGGACGAGGAGTAAATGGGTGGTGTCACCGTT
CGCGATGTCGACGCGCAGAAGTTCATCGCTGCTTACTCTGCTTTCCTGAA
GCGTCAGGGAAAGCTCCCCATTCCTGGATGGGTTGACACTGTCAAGACCT
CCTGCTCTAACGAGCTCCCTCCCCAGGACGCCGACTGGTACTACGTCCGC
GCCGCTGCCGTCGCTCGCCACATCTACATGCGCAAGACCGTCGGTGTTGG
CCGTCTCCGCAAGGTCCACGGTTCCACCAAGAACCGCGGCTCCCGCCCCG
CCCACCACGTCGATGCCTCCGGCTCCGTCGACCGTAAGGTCATCCAGTCC
CTCGAGAAGATCGGTGTCCTCGAGCACGATGAGGAGAAGGGTGGCCGCCG
CATCACCCAGAGCGGCCAGCGTGATCTTGACCGTATCGCCAAGACCACCG
TTGACGAGGAGGAGGACGAGGAGTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS19KJC3_011564Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011564-T1KJC3_011564-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011564-T1.utr5p1KJC3_011564-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011564-T1.exon1KJC3_011564-T1.exon1Aspergillus niger KJC3exon
KJC3_011564-T1.exon2KJC3_011564-T1.exon2Aspergillus niger KJC3exon
KJC3_011564-T1.exon3KJC3_011564-T1.exon3Aspergillus niger KJC3exon
KJC3_011564-T1.exon4KJC3_011564-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011564-T1.cdsKJC3_011564-T1.cdsAspergillus niger KJC3CDS


Properties
Property NameValue
DBxrefInterPro:IPR036390
DBxrefInterPro:IPR038111
DBxrefInterPro:IPR001266
DBxrefPFAM:PF01090
Product40S ribosomal protein S19
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:1000573..1001789 +
Powered by Drupal