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KJC3_011601-T2, KJC3_011601-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011601-T2
Unique NameKJC3_011601-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:1102671..1104615-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011601-T2 ID=KJC3_011601-T2|Name=KJC3_011601-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1945bp|location=Sequence derived from alignment at ch8:1102671..1104615- (Aspergillus niger KJC3)
CCACTTTCCAGATAACAATTCCAATTATCCAGACGATGCCATGTCGCTCC
CCGGTCTTGATCTAACACAACCCTCCGCGGACCGCGAGTTCGCGCCAGCC
CCGCCCTCTCAGATTAGCCTTCCCAAAGGCTCAGAGTGGCGGTTCGAAGT
CGCCTTTGGCACGACCGTCCGCGTAAAGGTGAGCTGCCGTGACCCCCTCA
GCACATTACCCATCCCTCACGAATCACAAAAAAAAAAAAAGACAGTTGAC
TGACATATCTACCACCTGGAGAGCTAGCTCTTAGCCGGAACCGCCGAACT
CTTTGGCACCGAACTAGCCCCCTCGCAAACCTACACCTTCTCCGGCACGA
AAGCAGCAATCTACACCTGGCATGGATGCACACTAGAAGTAAGCGCCGGA
GAGGCCATCACAGGTCTGGACAGCCTCGCCCCGGGAGGCACAAATGGAAC
AACGGCGCGCGGACTCGGCGCGGGCGGCTGCCAGAGCGAGTACGTGGCGG
AGGAAACACCGATGGTTGAATACGCGAACGTGCATTTTGCGCTGGAGACA
CTACGACAGGAGGCCAAAGCGACAGGGAAAGATGGCCCGCGGGTACTGAT
TCTCGGTCCTGAGGATGCGGGCAAGACAAGTCTGTCGAAGATCCTGACGG
CGTATGCGACTAAGGTGGGCCGGCAGCCGCTGGTGGTTAATTTGGATCCT
ACGGAGGGCATGCTAAGTGTTCCGGGGACGTTGACGGCTACGGCGTTCCG
GACGATGATTGATGTTGAGGAAGGATGGGGGAGTAGTCCCATGTCCGGGC
CGAGTGCGGTGCCGGTGAAGTTGCCCTTGGTGTATTTCTATCCGATGCAG
AACCCATTGGAGGCCGATGGCTCGGTGTATAAGGCTATTGTGTCGAGGTT
GGCGCTGTCGGTGACGGGGAGGATGGCGGAGGATGAGGATGCAAGGGAGA
CGGGAATTATTGTGGATACGCCGGGAATATTGAGTCAGAGTAAGGCTGGG
AATGTCGAGATGATTAATCATATTGTGACGGAGTTTGCGAGTGAGTTTTT
ACTTGATCCTGGTTGGAAGGGTGTATGCGCTGACGGGGTTATGGCACAGT
TACGACGATCTTGGTCATTGGCTCCGAGCGACTGTACAGCATCATGATGA
AGAACTTTGATAACAAGCCCACGGCTAGTGCGTCTGCAGCGGCGTCGGAT
GAGCGCATTTCGGTGGTTAAGTTGTCCAAGTCTGGGGGTTGTGTTGATCG
CGATGCGGCGTTCATGAAGGCTGTCAGCGAGTCGCAGATCCGGACATACT
TCTTCGGCAACCCAATTCCTTCGACGGCATCGGCAGCGCTGTCGCTGTCT
GCGTCGTCAACGACGAATGTTACTTTGTCGCCACATGCGCAGCAGCTAGA
CTTCAACGCTTTAGCGGTCTACAACTACACCATAGCGTCAGCAGAGGAGG
ACGAAGACGAATATGACCCGTCGCAGCTGGGTACCGGCGATGCCTTCCTC
CCAGGTGGAAGCAACGACGTGGACCTGGGTCAGACTCCGCAAGAAGAGGC
TCCGGTCGCACCGACGCTGCCTGGGATCGCTGGACCGGTGAAGGAGACGG
TGACGCCGGCGGGGTCGTCCAACGTGCCACTGAAGAAGGTACTGCCTCCT
GCGCCGACAGCGCTGGCCAATTCGCTGCTGGCCATCACACATGCAAGCTC
GACGGCCAGCCCGGCGGATGTGCGCGATGCCAGTATCATGGGCTTCTTGT
ATGTGGCTGACGTGGACGCGGAGAAGGGCAAGATCCGAGTGCTGGCGCCG
GTTGGAGGTCGCGTGCCACCGCGGGCGATTGTATGGGGGAAGAAATGGCC
TGGGGAGGTGGTGGGATTGGTGGGATAGTTGATACCAGAAGTTATTCGTA
ACTAGATGAGCGCTACATATGAAAGATATTCATGTCAAATTCAAA
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Coding sequence (CDS) from alignment at ch8:1102671..1104615-

>KJC3_011601-T2 ID=KJC3_011601-T2|Name=KJC3_011601-T2|organism=Aspergillus niger KJC3|type=CDS|length=2616bp|location=Sequence derived from alignment at ch8:1102671..1104615- (Aspergillus niger KJC3)
TTACGACGATCTTGGTCATTGGCTCCGAGCGACTGTACAGCATCATGATG
AAGAACTTTGATAACAAGCCCACGGCTAGTGCGTCTGCAGCGGCGTCGGA
TGAGCGCATTTCGGTGGTTAAGTTGTCCAAGTCTGGGGGTTGTGTTGATC
GCGATGCGGCGTTCATGAAGGCTGTCAGCGAGTCGCAGATCCGGACATAC
TTCTTCGGCAACCCAATTCCTTCGACGGCATCGGCAGCGCTGTCGCTGTC
TGCGTCGTCAACGACGAATGTTACTTTGTCGCCACATGCGCAGCAGCTAG
ACTTCAACGCTTTAGCGGTCTACAACTACACCATAGCGTCAGCAGAGGAG
GACGAAGACGAATATGACCCGTCGCAGCTGGGTACCGGCGATGCCTTCCT
CCCAGGTGGAAGCAACGACGTGGACCTGGGTCAGACTCCGCAAGAAGAGG
CTCCGGTCGCACCGACGCTGCCTGGGATCGCTGGACCGGTGAAGGAGACG
GTGACGCCGGCGGGGTCGTCCAACGTGCCACTGAAGAAGGTACTGCCTCC
TGCGCCGACAGCGCTGGCCAATTCGCTGCTGGCCATCACACATGCAAGCT
CGACGGCCAGCCCGGCGGATGTGCGCGATGCCAGTATCATGGGCTTCTTG
TATGTGGCTGACGTGGACGCGGAGAAGGGCAAGATCCGAGTGCTGGCGCC
GGTTGGAGGTCGCGTGCCACCGCGGGCGATTGTATGGGGGAAGAAATGGC
CTGGGGAGGTGGTGGGATTGGTGGGATAGATGGTTGAATACGCGAACGTG
CATTTTGCGCTGGAGACACTACGACAGGAGGCCAAAGCGACAGGGAAAGA
TGGCCCGCGGGTACTGATTCTCGGTCCTGAGGATGCGGGCAAGACAAGTC
TGTCGAAGATCCTGACGGCGTATGCGACTAAGGTGGGCCGGCAGCCGCTG
GTGGTTAATTTGGATCCTACGGAGGGCATGCTAAGTGTTCCGGGGACGTT
GACGGCTACGGCGTTCCGGACGATGATTGATGTTGAGGAAGGATGGGGGA
GTAGTCCCATGTCCGGGCCGAGTGCGGTGCCGGTGAAGTTGCCCTTGGTG
TATTTCTATCCGATGCAGAACCCATTGGAGGCCGATGGCTCGGTGTATAA
GGCTATTGTGTCGAGGTTGGCGCTGTCGGTGACGGGGAGGATGGCGGAGG
ATGAGGATGCAAGGGAGACGGGAATTATTGTGGATACGCCGGGAATATTG
AGTCAGAGTAAGGCTGGGAATGTCGAGATGATTAATCATATTGTGACGGA
GTTTGCGATTACGACGATCTTGGTCATTGGCTCCGAGCGACTGTACAGCA
TCATGATGAAGAACTTTGATAACAAGCCCACGGCTAGTGCGTCTGCAGCG
GCGTCGGATGAGCGCATTTCGGTGGTTAAGTTGTCCAAGTCTGGGGGTTG
TGTTGATCGCGATGCGGCGTTCATGAAGGCTGTCAGCGAGTCGCAGATCC
GGACATACTTCTTCGGCAACCCAATTCCTTCGACGGCATCGGCAGCGCTG
TCGCTGTCTGCGTCGTCAACGACGAATGTTACTTTGTCGCCACATGCGCA
GCAGCTAGACTTCAACGCTTTAGCGGTCTACAACTACACCATAGCGTCAG
CAGAGGAGGACGAAGACGAATATGACCCGTCGCAGCTGGGTACCGGCGAT
GCCTTCCTCCCAGGTGGAAGCAACGACGTGGACCTGGGTCAGACTCCGCA
AGAAGAGGCTCCGGTCGCACCGACGCTGCCTGGGATCGCTGGACCGGTGA
AGGAGACGGTGACGCCGGCGGGGTCGTCCAACGTGCCACTGAAGAAGGTA
CTGCCTCCTGCGCCGACAGCGCTGGCCAATTCGCTGCTGGCCATCACACA
TGCAAGCTCGACGGCCAGCCCGGCGGATGTGCGCGATGCCAGTATCATGG
GCTTCTTGTATGTGGCTGACGTGGACGCGGAGAAGGGCAAGATCCGAGTG
CTGGCGCCGGTTGGAGGTCGCGTGCCACCGCGGGCGATTGTATGGGGGAA
GAAATGGCCTGGGGAGGTGGTGGGATTGGTGGGATAGATGGTTGAATACG
CGAACGTGCATTTTGCGCTGGAGACACTACGACAGGAGGCCAAAGCGACA
GGGAAAGATGGCCCGCGGGTACTGATTCTCGGTCCTGAGGATGCGGGCAA
GACAAGTCTGTCGAAGATCCTGACGGCGTATGCGACTAAGGTGGGCCGGC
AGCCGCTGGTGGTTAATTTGGATCCTACGGAGGGCATGCTAAGTGTTCCG
GGGACGTTGACGGCTACGGCGTTCCGGACGATGATTGATGTTGAGGAAGG
ATGGGGGAGTAGTCCCATGTCCGGGCCGAGTGCGGTGCCGGTGAAGTTGC
CCTTGGTGTATTTCTATCCGATGCAGAACCCATTGGAGGCCGATGGCTCG
GTGTATAAGGCTATTGTGTCGAGGTTGGCGCTGTCGGTGACGGGGAGGAT
GGCGGAGGATGAGGATGCAAGGGAGACGGGAATTATTGTGGATACGCCGG
GAATATTGAGTCAGAGTAAGGCTGGGAATGTCGAGATGATTAATCATATT
GTGACGGAGTTTGCGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0031124mRNA 3'-end processing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CLP1_1KJC3_011601Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011601-T2KJC3_011601-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011601-T2.cdsKJC3_011601-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011601-T2.utr3p1KJC3_011601-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011601-T2.exon3KJC3_011601-T2.exon3Aspergillus niger KJC3exon
KJC3_011601-T2.exon2KJC3_011601-T2.exon2Aspergillus niger KJC3exon
KJC3_011601-T2.exon1KJC3_011601-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011601-T2.utr5p2KJC3_011601-T2.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_011601-T2.utr5p1KJC3_011601-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR010655
DBxrefInterPro:IPR038238
DBxrefInterPro:IPR032319
DBxrefPFAM:PF16575
DBxrefPFAM:PF06807
Product variant 2
ProductCleavage polyadenylation factor subunit clp1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:1102671..1104615 -
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