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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:1200167..1202534+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011638-T1 ID=KJC3_011638-T1|Name=KJC3_011638-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2368bp|location=Sequence derived from alignment at ch8:1200167..1202534+ (Aspergillus niger KJC3)
GAGAAAACCACCGGACGCCATGGTAAGTATATCCAAAATGTTTCATCGTC
TTCCAAATAGATGCTAATATACCTATCAGAAAATCAAAGCTCTTTCTCGT
CCTACTTCCTCGCAACAGGCTCCGGGAACCGCTGTCGTTCGACAGCCCCG
AAACCTCGACCCGGCGCAGCATCCATTCGAACGGGCTCGTGAGTATACCC
GTGCTCTCAATGCTACCAAGCTAGAGCGCCTGTTTGCTGCGCCCTTCCTG
GGCCAGATGGGCGACGGCCACGTGGACGGTGTGTATACCATGGCCAAGGA
CCCAGGCTCTTTGGAACGGTTCGCCAGTGGTAGTGGTGATGGTGTGGTCA
AGGTGTGGGATTTGACCACTCAGGGAGAGGTGTGGAACACCCAGGCACAC
GACAATATCGTCAAGGGTGTCTGCTGGACCCCCGATCGGAAGTTGCTCTC
TTGCGCGAGCGACAAGACCATCAAGCTTTTCGACCCGTACAACTCGGCAC
CCGAAGCACCACCGCTAGCAACCTACCTGGGCCAGGGCGCTTTCACCTGC
CTCACGCACCATCGGGACCTGCCATACTTCGCCGCCTCTTCTTCTCAGAT
CTCTATCTACGATCTCTCCCGTCCTTCCTCCACTCCGTCCCAGACCCTCC
ACTGGCCCACCAACGTCGATACCATCACCTCCATCGCTTTCAACCAGACT
GAGACGTCCATCCTTGGTTCGACCGGTATTGATCGCTCGATTATCATGTA
CGACCTTCGGACATCGTCCCCTCTACATAAAATGGTTCTGCGCCTGGCGT
CGAACGCGATCTCGTGGAATCCGATGGAAGCATTCAACTTTGCCGTTGCC
AACGAAGATCACAACGTCTACCTGTTCGATATGCGCAAGATGGATCGCGC
ATTGAACGTGCTCAAGGATCACGTCGCCGCTGTGATGGATGTGGATTTCA
GTCCCACTGGTCAGGAATTGGTCACTGCCTCTTACGATCGAACGATCCGC
TTGTGGAACAGATCCACGGGCCACTCTCGCGACATCTACCACACCAAGCG
TATGCAACGGTATGTATTTCACTTTCGCTCTCCTTATCCAAGCAATTACA
GTGCTGACTTCGTTCTACAGTGTCTTCTCCGCCAAGTTTACCCCCGATAA
CAAGTACGTCTTGTCCGGCTCCGACGATGGCAACATCCGACTTTGGCGCG
CAAACGCATCCGACCGCAGCGGTGTAAAGAGCGCTCGTCAACGGGCCAAG
CTCGAGTACGACCAGGCCTTGATCCAGAGATACTCGCACATGCCGGAAAT
CCGCCGAATCCGACGCCAGCGTCACGTGCCGAAGCCGATCAAGAAGGCGC
GCGAGATCAAGCGGGAGGAGCTGATGGCGATCAAGAGACGCGAGGAGAAC
GTGCGCAAGCACACCAAGAAGGAGAACCTGCCCAAGAGACAGAGCGAGCG
CGAGAAGATGATCCTGGCCAAGGAGCAATAGATGTTCTGCCTGGACCGTC
CATCTGGAGCATCGTGCGGAAAGGCTGCGCTCAGAGACCGAGTACATTGT
GTCTCAAGTATATACATTGCATGGACATGATACAGTTGGGGTATATTCTA
TTACAGCTGTTGTTCAGCTTCGTCGTCAGTCCTCTTTCACGTGATCCAAC
TCAGTCTGCAATTGCTGGCTGGACGAATCAGCCCTGTCGGCTTTGGACGA
CGCTTGTGCTACTGCGCCGTCAATCCCGCTCAGGTACCGCGCCAACCGCT
GCACGCTCGCCGGCAACACCGCATACCAGTTCACCAGCATGGCAAACGCG
GGCAACCTTATCACGCCACCCCTGCCGCTGTCGACAGCCGAGACAATAGC
CTGGGCCACCTGGACTGGCTCCAGAACGGGCGCAAAGAACCGGTTTGGTG
TCTGGACGGATTCAAACAGCGGCGTTGAGATCTGGCCCGGCTCCACCAGA
ACCATCTTCACTTTTGCCTCGTCCCCGGATTGGCGAAGTTCGGCCTCGAG
CGAGCGATGCAACGCGCTCAACCCAGCCTTACTAGCCGAGTAATCCGCCA
ACCCAGCCGCACATAGCTGCCCGAGCACGGAACTCACTGTGACAATGGTG
CCACCATCCGGAGCAGCCAGCATATAAGGCAAAAATACCTGATAGGCATG
AACGGCGGCGAGTAAATTGGTGTTGATAGTTTTCTGGAATGCCTCGGGAG
AGAGCTGTTGCAGAGGCAGCCCGTTGATTCTTGCAGCTGCGCAATGGATC
AATATGGTAGGAGTACCCAACTATCCCGCAATCAATCAATGAATAGTTAG
CCATCATCAATATACCCATATCCATACCTTTCTTCTTCCCCTTTGTACAC
AATAATAGGAAATTATAC back to topCoding sequence (CDS) from alignment at ch8:1200167..1202534+ >KJC3_011638-T1 ID=KJC3_011638-T1|Name=KJC3_011638-T1|organism=Aspergillus niger KJC3|type=CDS|length=4032bp|location=Sequence derived from alignment at ch8:1200167..1202534+ (Aspergillus niger KJC3)
ATGAAAATCAAAGCTCTTTCTCGTCCTACTTCCTCGCAACAGGCTCCGGG
AACCGCTGTCGTTCGACAGCCCCGAAACCTCGACCCGGCGCAGCATCCAT
TCGAACGGGCTCGTGAGTATACCCGTGCTCTCAATGCTACCAAGCTAGAG
CGCCTGTTTGCTGCGCCCTTCCTGGGCCAGATGGGCGACGGCCACGTGGA
CGGTGTGTATACCATGGCCAAGGACCCAGGCTCTTTGGAACGGTTCGCCA
GTGGTAGTGGTGATGGTGTGGTCAAGGTGTGGGATTTGACCACTCAGGGA
GAGGTGTGGAACACCCAGGCACACGACAATATCGTCAAGGGTGTCTGCTG
GACCCCCGATCGGAAGTTGCTCTCTTGCGCGAGCGACAAGACCATCAAGC
TTTTCGACCCGTACAACTCGGCACCCGAAGCACCACCGCTAGCAACCTAC
CTGGGCCAGGGCGCTTTCACCTGCCTCACGCACCATCGGGACCTGCCATA
CTTCGCCGCCTCTTCTTCTCAGATCTCTATCTACGATCTCTCCCGTCCTT
CCTCCACTCCGTCCCAGACCCTCCACTGGCCCACCAACGTCGATACCATC
ACCTCCATCGCTTTCAACCAGACTGAGACGTCCATCCTTGGTTCGACCGG
TATTGATCGCTCGATTATCATGTACGACCTTCGGACATCGTCCCCTCTAC
ATAAAATGGTTCTGCGCCTGGCGTCGAACGCGATCTCGTGGAATCCGATG
GAAGCATTCAACTTTGCCGTTGCCAACGAAGATCACAACGTCTACCTGTT
CGATATGCGCAAGATGGATCGCGCATTGAACGTGCTCAAGGATCACGTCG
CCGCTGTGATGGATGTGGATTTCAGTCCCACTGGTCAGGAATTGGTCACT
GCCTCTTACGATCGAACGATCCGCTTGTGGAACAGATCCACGGGCCACTC
TCGCGACATCTACCACACCAAGCGTATGCAACGTGTCTTCTCCGCCAAGT
TTACCCCCGATAACAAGTACGTCTTGTCCGGCTCCGACGATGGCAACATC
CGACTTTGGCGCGCAAACGCATCCGACCGCAGCGGTGTAAAGAGCGCTCG
TCAACGGGCCAAGCTCGAGTACGACCAGGCCTTGATCCAGAGATACTCGC
ACATGCCGGAAATCCGCCGAATCCGACGCCAGCGTCACGTGCCGAAGCCG
ATCAAGAAGGCGCGCGAGATCAAGCGGGAGGAGCTGATGGCGATCAAGAG
ACGCGAGGAGAACGTGCGCAAGCACACCAAGAAGGAGAACCTGCCCAAGA
GACAGAGCGAGCGCGAGAAGATGATCCTGGCCAAGGAGCAATAGATGAAA
ATCAAAGCTCTTTCTCGTCCTACTTCCTCGCAACAGGCTCCGGGAACCGC
TGTCGTTCGACAGCCCCGAAACCTCGACCCGGCGCAGCATCCATTCGAAC
GGGCTCGTGAGTATACCCGTGCTCTCAATGCTACCAAGCTAGAGCGCCTG
TTTGCTGCGCCCTTCCTGGGCCAGATGGGCGACGGCCACGTGGACGGTGT
GTATACCATGGCCAAGGACCCAGGCTCTTTGGAACGGTTCGCCAGTGGTA
GTGGTGATGGTGTGGTCAAGGTGTGGGATTTGACCACTCAGGGAGAGGTG
TGGAACACCCAGGCACACGACAATATCGTCAAGGGTGTCTGCTGGACCCC
CGATCGGAAGTTGCTCTCTTGCGCGAGCGACAAGACCATCAAGCTTTTCG
ACCCGTACAACTCGGCACCCGAAGCACCACCGCTAGCAACCTACCTGGGC
CAGGGCGCTTTCACCTGCCTCACGCACCATCGGGACCTGCCATACTTCGC
CGCCTCTTCTTCTCAGATCTCTATCTACGATCTCTCCCGTCCTTCCTCCA
CTCCGTCCCAGACCCTCCACTGGCCCACCAACGTCGATACCATCACCTCC
ATCGCTTTCAACCAGACTGAGACGTCCATCCTTGGTTCGACCGGTATTGA
TCGCTCGATTATCATGTACGACCTTCGGACATCGTCCCCTCTACATAAAA
TGGTTCTGCGCCTGGCGTCGAACGCGATCTCGTGGAATCCGATGGAAGCA
TTCAACTTTGCCGTTGCCAACGAAGATCACAACGTCTACCTGTTCGATAT
GCGCAAGATGGATCGCGCATTGAACGTGCTCAAGGATCACGTCGCCGCTG
TGATGGATGTGGATTTCAGTCCCACTGGTCAGGAATTGGTCACTGCCTCT
TACGATCGAACGATCCGCTTGTGGAACAGATCCACGGGCCACTCTCGCGA
CATCTACCACACCAAGCGTATGCAACGTGTCTTCTCCGCCAAGTTTACCC
CCGATAACAAGTACGTCTTGTCCGGCTCCGACGATGGCAACATCCGACTT
TGGCGCGCAAACGCATCCGACCGCAGCGGTGTAAAGAGCGCTCGTCAACG
GGCCAAGCTCGAGTACGACCAGGCCTTGATCCAGAGATACTCGCACATGC
CGGAAATCCGCCGAATCCGACGCCAGCGTCACGTGCCGAAGCCGATCAAG
AAGGCGCGCGAGATCAAGCGGGAGGAGCTGATGGCGATCAAGAGACGCGA
GGAGAACGTGCGCAAGCACACCAAGAAGGAGAACCTGCCCAAGAGACAGA
GCGAGCGCGAGAAGATGATCCTGGCCAAGGAGCAATAGATGAAAATCAAA
GCTCTTTCTCGTCCTACTTCCTCGCAACAGGCTCCGGGAACCGCTGTCGT
TCGACAGCCCCGAAACCTCGACCCGGCGCAGCATCCATTCGAACGGGCTC
GTGAGTATACCCGTGCTCTCAATGCTACCAAGCTAGAGCGCCTGTTTGCT
GCGCCCTTCCTGGGCCAGATGGGCGACGGCCACGTGGACGGTGTGTATAC
CATGGCCAAGGACCCAGGCTCTTTGGAACGGTTCGCCAGTGGTAGTGGTG
ATGGTGTGGTCAAGGTGTGGGATTTGACCACTCAGGGAGAGGTGTGGAAC
ACCCAGGCACACGACAATATCGTCAAGGGTGTCTGCTGGACCCCCGATCG
GAAGTTGCTCTCTTGCGCGAGCGACAAGACCATCAAGCTTTTCGACCCGT
ACAACTCGGCACCCGAAGCACCACCGCTAGCAACCTACCTGGGCCAGGGC
GCTTTCACCTGCCTCACGCACCATCGGGACCTGCCATACTTCGCCGCCTC
TTCTTCTCAGATCTCTATCTACGATCTCTCCCGTCCTTCCTCCACTCCGT
CCCAGACCCTCCACTGGCCCACCAACGTCGATACCATCACCTCCATCGCT
TTCAACCAGACTGAGACGTCCATCCTTGGTTCGACCGGTATTGATCGCTC
GATTATCATGTACGACCTTCGGACATCGTCCCCTCTACATAAAATGGTTC
TGCGCCTGGCGTCGAACGCGATCTCGTGGAATCCGATGGAAGCATTCAAC
TTTGCCGTTGCCAACGAAGATCACAACGTCTACCTGTTCGATATGCGCAA
GATGGATCGCGCATTGAACGTGCTCAAGGATCACGTCGCCGCTGTGATGG
ATGTGGATTTCAGTCCCACTGGTCAGGAATTGGTCACTGCCTCTTACGAT
CGAACGATCCGCTTGTGGAACAGATCCACGGGCCACTCTCGCGACATCTA
CCACACCAAGCGTATGCAACGTGTCTTCTCCGCCAAGTTTACCCCCGATA
ACAAGTACGTCTTGTCCGGCTCCGACGATGGCAACATCCGACTTTGGCGC
GCAAACGCATCCGACCGCAGCGGTGTAAAGAGCGCTCGTCAACGGGCCAA
GCTCGAGTACGACCAGGCCTTGATCCAGAGATACTCGCACATGCCGGAAA
TCCGCCGAATCCGACGCCAGCGTCACGTGCCGAAGCCGATCAAGAAGGCG
CGCGAGATCAAGCGGGAGGAGCTGATGGCGATCAAGAGACGCGAGGAGAA
CGTGCGCAAGCACACCAAGAAGGAGAACCTGCCCAAGAGACAGAGCGAGC
GCGAGAAGATGATCCTGGCCAAGGAGCAATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011638-T1.utr5p1 | KJC3_011638-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011638-T1.utr3p1 | KJC3_011638-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036322 |
| DBxref | InterPro:IPR017986 |
| DBxref | InterPro:IPR015943 |
| DBxref | InterPro:IPR007287 |
| DBxref | InterPro:IPR001680 |
| DBxref | InterPro:IPR020472 |
| DBxref | PFAM:PF00400 |
| DBxref | PFAM:PF04158 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:1200167..1202534 + |
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