You are here

Home

KJC3_011647-T2, KJC3_011647-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011647-T2
Unique NameKJC3_011647-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:1217081..1218571-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011647-T2 ID=KJC3_011647-T2|Name=KJC3_011647-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1491bp|location=Sequence derived from alignment at ch8:1217081..1218571- (Aspergillus niger KJC3)
CTTCCCTTCTCAACTGGATTGCCATACAACGAACACGAAAAGCACCATGT
TTATAGGAAAGATAAGGAGGAGTACTTACTATTGCTTTCTTTTCCTTCTT
ATTGCTGCTCTTGTTGGTAAATCGACAGCCTCTCTTGGTGACCACCTTCC
CGACTTCAAAGAATGCGTCAAGGTACATCAACCGGAACCTCATAGCATCC
ACAACCCGGGAGCCAATGGCTAAGCAACGAACAGGTTTGCCAGGCTGAGA
ATTGCCAGGATGGCAATGAAGTAATTCGTGAGTTACGTCAGCAGTACTTT
CTAGCAGCTTAGCTACTAACCAATCTGCTACCAGCTCTCCATCTTCGCCT
CATGCTGTGGACATGCCCTTCCGAATGCGATTATACCTGTCAACATGTCG
TGACGGACCGCCGTGTCGCTCGTGATCCTCCCATGTTGAACCCAGTATTA
CAATTCCATGGTAAATGGCCATTCCGCAGAATCCTGGGGATGCAGGAACC
ATTTTCCGTTCTCTTCTCTTTGTTCAACTTTCTTGCCCACTGGCACGGAA
TAGGACGCATTCGTGAGACGGTACCAGCTTGGCACTCCCTGCGACCCTAT
TATATTGCCTTCGGATACTGCGGTTTGGCATGCTGGACCTTCAGCGCCAT
TTTCCACATGAGGGACTTGTCCTTGACTGAAAAGTTGGACTACTTTGGAG
CGGGGGCTAATGTGATGTATGGTTTCTATCTTGCACTCCTCCGGATCTTC
CGTCTGGACCAAGAGAAGCCTAGACATAAACCAACTTTACGCCGTCTGTT
GACCACGGTCTGTGCTTTGCTCTACACATTGCATGTGTGCTACCTCAGCT
TCTGGTCGTGGGACTACACCTACAACATGATCGCAAATATCGTGATAGGA
ATGGCCCAGAACATCCTGTGGGTGGCTTTCAGTATTCACCGTTACCGCAA
GTACGGCAAGGAATGGATGGCCTGGCCCGGAATGATCGTGGTCTGGATTA
TTTTGGCTATGAGCCTCGAATTGCTGGACTTTCCCCCTTGGCACGAGCTG
ATTGATGCGCATAGCCTTTGGCATCTTGGAACCGTAATCCCAACTGCTTG
GTGGTACATGTGAGTTTATGGTGGAATCTGACCATAGGTTTACTACGTGG
CTGACAATTGCGATAGGTTTCTCATCAAGGATGTCCAAAACGATGTGGCG
GGCGATAGGCTGAAAGCCTGATTCAGCTCGATGGATTAAGTATCCTACGT
ATCTGGACACGCATGACCATCATCATACGGTCTATTGGTCCAGCTTCGTA
TCACCAGTGCAGATGATCGGATAGTAGTAGCTTGTATTATATGATAGAGT
AGTTTTCAACCAACCGCGCCAGGTAATCAGCCAATGAATAGGGTTTTCCT
AGCATTTATAATGGACGATTCTTTTTAGTTTATTTTGCACTGAACACCAG
GTCTAGCAAAAGACACGAGATGCCATGCCATGCCATGCCAT
back to top

Coding sequence (CDS) from alignment at ch8:1217081..1218571-

>KJC3_011647-T2 ID=KJC3_011647-T2|Name=KJC3_011647-T2|organism=Aspergillus niger KJC3|type=CDS|length=2844bp|location=Sequence derived from alignment at ch8:1217081..1218571- (Aspergillus niger KJC3)
CTCTCCATCTTCGCCTCATGCTGTGGACATGCCCTTCCGAATGCGATTAT
ACCTGTCAACATGTCGTGACGGACCGCCGTGTCGCTCGTGATCCTCCCAT
GTTGAACCCAGTATTACAATTCCATGGTAAATGGCCATTCCGCAGAATCC
TGGGGATGCAGGAACCATTTTCCGTTCTCTTCTCTTTGTTCAACTTTCTT
GCCCACTGGCACGGAATAGGACGCATTCGTGAGACGGTACCAGCTTGGCA
CTCCCTGCGACCCTATTATATTGCCTTCGGATACTGCGGTTTGGCATGCT
GGACCTTCAGCGCCATTTTCCACATGAGGGACTTGTCCTTGACTGAAAAG
TTGGACTACTTTGGAGCGGGGGCTAATGTGATGTATGGTTTCTATCTTGC
ACTCCTCCGGATCTTCCGTCTGGACCAAGAGAAGCCTAGACATAAACCAA
CTTTACGCCGTCTGTTGACCACGGTCTGTGCTTTGCTCTACACATTGCAT
GTGTGCTACCTCAGCTTCTGGTCGTGGGACTACACCTACAACATGATCGC
AAATATCGTGATAGGAATGGCCCAGAACATCCTGTGGGTGGCTTTCAGTA
TTCACCGTTACCGCAAGTACGGCAAGGAATGGATGGCCTGGCCCGGAATG
ATCGTGGTCTGGATTATTTTGGCTATGAGCCTCGAATTGCTGGACTTTCC
CCCTTGGCACGAGCTGATTGATGCGCATAGCCTTTGGCATCTTGGAACCG
TAATCCCAACTGCTTGGTGGTACATGTGAGTTTGCCAGGCTGAGAATTGC
CAGGATGGCAATGAAGTAATTCATGTTTATAGGAAAGATAAGGAGGAGTA
CTTACTATTGCTTTCTTTTCCTTCTTATTGCTGCTCTTGTTGGTAAATCG
ACAGCCTCTCTTGGTGACCACCTTCCCGACTTCAAAGAATGCGTCAAGCT
CTCCATCTTCGCCTCATGCTGTGGACATGCCCTTCCGAATGCGATTATAC
CTGTCAACATGTCGTGACGGACCGCCGTGTCGCTCGTGATCCTCCCATGT
TGAACCCAGTATTACAATTCCATGGTAAATGGCCATTCCGCAGAATCCTG
GGGATGCAGGAACCATTTTCCGTTCTCTTCTCTTTGTTCAACTTTCTTGC
CCACTGGCACGGAATAGGACGCATTCGTGAGACGGTACCAGCTTGGCACT
CCCTGCGACCCTATTATATTGCCTTCGGATACTGCGGTTTGGCATGCTGG
ACCTTCAGCGCCATTTTCCACATGAGGGACTTGTCCTTGACTGAAAAGTT
GGACTACTTTGGAGCGGGGGCTAATGTGATGTATGGTTTCTATCTTGCAC
TCCTCCGGATCTTCCGTCTGGACCAAGAGAAGCCTAGACATAAACCAACT
TTACGCCGTCTGTTGACCACGGTCTGTGCTTTGCTCTACACATTGCATGT
GTGCTACCTCAGCTTCTGGTCGTGGGACTACACCTACAACATGATCGCAA
ATATCGTGATAGGAATGGCCCAGAACATCCTGTGGGTGGCTTTCAGTATT
CACCGTTACCGCAAGTACGGCAAGGAATGGATGGCCTGGCCCGGAATGAT
CGTGGTCTGGATTATTTTGGCTATGAGCCTCGAATTGCTGGACTTTCCCC
CTTGGCACGAGCTGATTGATGCGCATAGCCTTTGGCATCTTGGAACCGTA
ATCCCAACTGCTTGGTGGTACATGTGAGTTTGCCAGGCTGAGAATTGCCA
GGATGGCAATGAAGTAATTCATGTTTATAGGAAAGATAAGGAGGAGTACT
TACTATTGCTTTCTTTTCCTTCTTATTGCTGCTCTTGTTGGTAAATCGAC
AGCCTCTCTTGGTGACCACCTTCCCGACTTCAAAGAATGCGTCAAGCTCT
CCATCTTCGCCTCATGCTGTGGACATGCCCTTCCGAATGCGATTATACCT
GTCAACATGTCGTGACGGACCGCCGTGTCGCTCGTGATCCTCCCATGTTG
AACCCAGTATTACAATTCCATGGTAAATGGCCATTCCGCAGAATCCTGGG
GATGCAGGAACCATTTTCCGTTCTCTTCTCTTTGTTCAACTTTCTTGCCC
ACTGGCACGGAATAGGACGCATTCGTGAGACGGTACCAGCTTGGCACTCC
CTGCGACCCTATTATATTGCCTTCGGATACTGCGGTTTGGCATGCTGGAC
CTTCAGCGCCATTTTCCACATGAGGGACTTGTCCTTGACTGAAAAGTTGG
ACTACTTTGGAGCGGGGGCTAATGTGATGTATGGTTTCTATCTTGCACTC
CTCCGGATCTTCCGTCTGGACCAAGAGAAGCCTAGACATAAACCAACTTT
ACGCCGTCTGTTGACCACGGTCTGTGCTTTGCTCTACACATTGCATGTGT
GCTACCTCAGCTTCTGGTCGTGGGACTACACCTACAACATGATCGCAAAT
ATCGTGATAGGAATGGCCCAGAACATCCTGTGGGTGGCTTTCAGTATTCA
CCGTTACCGCAAGTACGGCAAGGAATGGATGGCCTGGCCCGGAATGATCG
TGGTCTGGATTATTTTGGCTATGAGCCTCGAATTGCTGGACTTTCCCCCT
TGGCACGAGCTGATTGATGCGCATAGCCTTTGGCATCTTGGAACCGTAAT
CCCAACTGCTTGGTGGTACATGTGAGTTTGCCAGGCTGAGAATTGCCAGG
ATGGCAATGAAGTAATTCATGTTTATAGGAAAGATAAGGAGGAGTACTTA
CTATTGCTTTCTTTTCCTTCTTATTGCTGCTCTTGTTGGTAAATCGACAG
CCTCTCTTGGTGACCACCTTCCCGACTTCAAAGAATGCGTCAAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006506GPI anchor biosynthetic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_011647KJC3_011647Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011647-T2KJC3_011647-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011647-T2.cdsKJC3_011647-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011647-T2.utr3p1KJC3_011647-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011647-T2.exon3KJC3_011647-T2.exon3Aspergillus niger KJC3exon
KJC3_011647-T2.exon2KJC3_011647-T2.exon2Aspergillus niger KJC3exon
KJC3_011647-T2.exon1KJC3_011647-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011647-T2.utr5p1KJC3_011647-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR007217
DBxrefPFAM:PF04080
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:1217081..1218571 -
Powered by Drupal