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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:1281094..1284626- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011671-T1 ID=KJC3_011671-T1|Name=KJC3_011671-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3533bp|location=Sequence derived from alignment at ch8:1281094..1284626- (Aspergillus niger KJC3)
CCCGGCATAATTGTTGCTTATTATTCCTCTTACTACGGAGTACTACTAAC
TAACTTATTAGCCATCTAACTAACTAAATAAGCCTCCTTCAATGCGACCC
ATTTCAATTCTCTAGTTGCCTCGGCCCTTGAGCCTCAAAGTTCCAGCATC
GTAACTTTCATTTGTAAGCAGCAAACAATGCATAACGCGCAGCCACGTGA
TTTCCTCCCCGCTTGATTCAGAGTCTCGGCTTTCAGACTCGCTTTCTCCT
CTCTCTCTGATCGACACTGCATTTCAAATCACCATCAGACATGGCACCAA
GAAAAAGGAAGTGATGAGGAAATTAGCATTGAGAGAAGACAAACGATAGG
AGAAGGAAAACAGAGAAGTGAAAAGAAAGAAAAGAAAAGAAAAACACATT
CCGAAGCTCCATAAAACGGTCATCACCGGTGAAGTGCAGGGCTCCGATTC
CACCCGTCATTGGAGCCCCTCTTCTCGATCGACGGCGGAGTTTGGCCCAA
CTTAAGGTACCAGACTACTTCGTCCACTACTTCGTCCCAGCCAACCTACG
CCTGCGTCCAGACCTCCACCGGGCGGGGATATTCTGACCGGTGGTCGATA
TTGCATTAGGTCACTCCGGGGTCGCTTCTTTGGGCTCACTGCCCATAATC
TCAAAACTCAAAAAGTTGAACGGTCCTGCGAAACCTGCGAATCTAGTCTT
TCCATCTTCCAAACCAACCCTTCTAGACTAAACCTCCGTCCCTTAATAAT
TCTTCGAGCCTCGTTCGGGCGATCATCCTTCCAATTTCCCCCACAACAAC
TGGACCGTTCGTCCGTGGACTAACACTCTCTAACTCTACTTCACCCCCCT
GGTGCCCCCCCGAGGTGCTGTTGTTCGCTAGTGCCCGGACTTATCGGCTT
ACCTTAACTACGACTAGTCATCCCTGCTGCATCTTCTCCAGATTTCTCTT
GTTATCATTCCCACTTTCCGTCTCCGACCCGCAATCGACAGCGCTGCTGC
GTCCGGCTTCTGTGGTGTAGTATGCGCGGACGTCCTGGTCCTGGTCCGCG
ACAATCACCCCATGTTCTAGGCTTCTGAATGCGACTCGCAAAAGCATGGG
AACACCCGCTGTGTCCTTTAGATGCTCATGGACCAACGAACCAGACTGCG
CAAGGCTTGTGACGCCTGTAGTATCCGAAAAGTGAAGGTACACTACATGC
AGCTGTCACAGTCCCCAAAGCAAGTGCAGTATTGGCTAACTCTGCTTAGT
GCGACACCAGCGGACCACCCTGTCGGTCGTGCGCAAGCTTAGACATCCCT
TGCACTTACGAACGACCGAGTCGACGTCGCGGCCCCCCTAATCGCCATGC
AGAAGCATTCAAAAAGCAGAAGTTAGCAGAGTCCCCTGCAGGCTCCCCAA
GTCCATCAGACCATGCCACACCAGGTCCTCCCGGGTCAGTGGGGAGCACC
ACCATCCCCTCGTCAACCCCAGCGCCGCTATCGGCGGAGTCCATTTGTTC
TATGCCGACCCTGCGGCTGTTAATAGACGATTTTTTCACCTACATCCATC
CCTTGGTCCCTGTCCCCCATGAGCCCACGTTCCGCGCCGCTTTGGAACGG
CGAGATGACCTCTCTAACACTACCTTTTTGGCCCTCACGGCCGCCATGGT
CGGGACATTAGTGGCGTCCTTTCCGCGGAGGCCCAAGCGGCATTTAAAGA
CGGAGGCGGAGAAGGCAGCATTTCCACACTCGATGGCATTGGTCCGGCGA
TGCCATGATGTTGCAGTCCAAGCTAGAGGCTGTGGCTATCTTGACCGAAG
CGCGACAGTGTACGATGCGGCAACTAGCTATTTTCTCGGGCTTTGCTCCG
GATATGTTTGGCACATGCGCCGATGTCGTGCATATTTTGCGGAATGCCTT
ACCATGCTACACGTGTATGACCTTTGTCGGCAATCGAATTGCCTTACAGC
AATGACTCCGCCAAGCCCCTCTTCCTCGTCGCGTTATTCGCAAGACCCTT
TTGGCGGCGCGACCGCCGATCTTCACGTCGACATCATCGAGCAGGAGCTT
GGACGACGCTTATTCTACACCACCCTCGCCGGCTACCGGACGCTGCAGCA
GCTTGGCTCCGGTGACGTGACTATCCATGTGCCTCCTGAAACCCCGACTT
CACGCTATCCTCCCTTGCCCCTCGAAGTGGATGATGAGTATATCTTTTCA
ACACATGTTGATCCACAACCATCCAATCGGATTTCTCTTCTGGTGGGCTT
CAACGCCAACGTCCGGGTGCTGAGTTCGTATAATACTCTCTCCGCCTGGG
AGACTGCGTTTGGGAGCGGCCAGGTCTTTGATTGGGAACGGCAACGCTCT
CTTATGTGGGAGTGTCTGCAAAAGGCTAAATCTGCCCTTTCTAATGTTCC
ACGGGAATTGGCGATCCAGCTATCCCAAGATCCCGAAATGGACAATGGGC
AAGGCCAATTCGACCCTCCACCTCCTGTGGAGGACCTGCGGGCACATAAA
CGCCATATGCAACTTCAGATTCAAAAGGCGAACATCTACGCAAGCCAGCT
GGGCACCCGGTCATACTTGGTAGAGAAATATTGGACCTTGTACGGGGCAT
GGAAATTGCAGCGGAAACAGTCCGACCAGCAAATACCTGTCAGCCCCCGA
ACTACGATTAAGGTTGAAGGTGAGCAGCCGCAGAGTCTGGACACATCCGA
TGCGGATGCCCAATCAGATTATATTGGAAGGATGATGGCGGAAGAGCGTC
GGCTGGTGATCCGTGACCTATTTATCTTGTTGCAATCGGTCAACGAGAGT
AGTATGGAACCCAATGGCGGCAGCTTCGTATGTACACTAATCTCCTTGCA
CATGAATTGAGAGCACTGACCTCTTCATAGACCGCTAAAATCCGCCAAAT
TGCATCCACATTACTCAACTTTCCGCATCAGAACATGATCACGCCCTCCA
TGACTGGTCCTCACCCTTTGACCTCCGCAGAAGCCGAAGCTTACCTCCGG
GCATTCATCGATACTCTTGTACGCCTAGAGGGGTTCAAGTCCGGTTCTAG
CCAGGGCTCCACCGGCTCCAGTCCCGAGGTGCACCGACAATCAATCAGCT
ACTTGAGCGACCATGATCGCGATGAAGAAGAGCTGCGCCAATGGGCCAGT
CTGAAAGAATACCAGGCCAAGTTTGCCGAAGCAGGGGGCATGTTATCCGA
ACTGTAATGGACACGAAAGCATTTTCAAAGCTGACTTATTTTGCATCCTT
GTAGCTGGAGTTTCTAGGATGGGGTATCGATTGCTTTACTCGTTTGGGAG
GCGGGGTACCGATTGTTAATGAAGTTACTCGATTAGCAAGCAGAGGGTGG
CGACGGAGTTCCGTGTGTATTATTTGGTGGGGGGAGTATGATTGAACGGC
CTTGGTGTCTATATATGTGTGTATTATTTATAGAGTGTGGATTGACTTTT
TGACTGTTTGTATCCTGGATGGATGATACCTGTATCTAGCTCATTCTTGA
TGGGTGGATGATATGATTTGATGTGTTTCATAG back to topCoding sequence (CDS) from alignment at ch8:1281094..1284626- >KJC3_011671-T1 ID=KJC3_011671-T1|Name=KJC3_011671-T1|organism=Aspergillus niger KJC3|type=CDS|length=5913bp|location=Sequence derived from alignment at ch8:1281094..1284626- (Aspergillus niger KJC3)
ACCGCTAAAATCCGCCAAATTGCATCCACATTACTCAACTTTCCGCATCA
GAACATGATCACGCCCTCCATGACTGGTCCTCACCCTTTGACCTCCGCAG
AAGCCGAAGCTTACCTCCGGGCATTCATCGATACTCTTGTACGCCTAGAG
GGGTTCAAGTCCGGTTCTAGCCAGGGCTCCACCGGCTCCAGTCCCGAGGT
GCACCGACAATCAATCAGCTACTTGAGCGACCATGATCGCGATGAAGAAG
AGCTGCGCCAATGGGCCAGTCTGAAAGAATACCAGGCCAAGTTTGCCGAA
GCAGGGGGCATGTTATCCGAACTGTAATGCGACACCAGCGGACCACCCTG
TCGGTCGTGCGCAAGCTTAGACATCCCTTGCACTTACGAACGACCGAGTC
GACGTCGCGGCCCCCCTAATCGCCATGCAGAAGCATTCAAAAAGCAGAAG
TTAGCAGAGTCCCCTGCAGGCTCCCCAAGTCCATCAGACCATGCCACACC
AGGTCCTCCCGGGTCAGTGGGGAGCACCACCATCCCCTCGTCAACCCCAG
CGCCGCTATCGGCGGAGTCCATTTGTTCTATGCCGACCCTGCGGCTGTTA
ATAGACGATTTTTTCACCTACATCCATCCCTTGGTCCCTGTCCCCCATGA
GCCCACGTTCCGCGCCGCTTTGGAACGGCGAGATGACCTCTCTAACACTA
CCTTTTTGGCCCTCACGGCCGCCATGGTCGGGACATTAGTGGCGTCCTTT
CCGCGGAGGCCCAAGCGGCATTTAAAGACGGAGGCGGAGAAGGCAGCATT
TCCACACTCGATGGCATTGGTCCGGCGATGCCATGATGTTGCAGTCCAAG
CTAGAGGCTGTGGCTATCTTGACCGAAGCGCGACAGTGTACGATGCGGCA
ACTAGCTATTTTCTCGGGCTTTGCTCCGGATATGTTTGGCACATGCGCCG
ATGTCGTGCATATTTTGCGGAATGCCTTACCATGCTACACGTGTATGACC
TTTGTCGGCAATCGAATTGCCTTACAGCAATGACTCCGCCAAGCCCCTCT
TCCTCGTCGCGTTATTCGCAAGACCCTTTTGGCGGCGCGACCGCCGATCT
TCACGTCGACATCATCGAGCAGGAGCTTGGACGACGCTTATTCTACACCA
CCCTCGCCGGCTACCGGACGCTGCAGCAGCTTGGCTCCGGTGACGTGACT
ATCCATGTGCCTCCTGAAACCCCGACTTCACGCTATCCTCCCTTGCCCCT
CGAAGTGGATGATGAGTATATCTTTTCAACACATGTTGATCCACAACCAT
CCAATCGGATTTCTCTTCTGGTGGGCTTCAACGCCAACGTCCGGGTGCTG
AGTTCGTATAATACTCTCTCCGCCTGGGAGACTGCGTTTGGGAGCGGCCA
GGTCTTTGATTGGGAACGGCAACGCTCTCTTATGTGGGAGTGTCTGCAAA
AGGCTAAATCTGCCCTTTCTAATGTTCCACGGGAATTGGCGATCCAGCTA
TCCCAAGATCCCGAAATGGACAATGGGCAAGGCCAATTCGACCCTCCACC
TCCTGTGGAGGACCTGCGGGCACATAAACGCCATATGCAACTTCAGATTC
AAAAGGCGAACATCTACGCAAGCCAGCTGGGCACCCGGTCATACTTGGTA
GAGAAATATTGGACCTTGTACGGGGCATGGAAATTGCAGCGGAAACAGTC
CGACCAGCAAATACCTGTCAGCCCCCGAACTACGATTAAGGTTGAAGGTG
AGCAGCCGCAGAGTCTGGACACATCCGATGCGGATGCCCAATCAGATTAT
ATTGGAAGGATGATGGCGGAAGAGCGTCGGCTGGTGATCCGTGACCTATT
TATCTTGTTGCAATCGGTCAACGAGAGTAGTATGGAACCCAATGGCGGCA
GCTTCATGCTCATGGACCAACGAACCAGACTGCGCAAGGCTTGTGACGCC
TGTAGTATCCGAAAAGTGAAGACCGCTAAAATCCGCCAAATTGCATCCAC
ATTACTCAACTTTCCGCATCAGAACATGATCACGCCCTCCATGACTGGTC
CTCACCCTTTGACCTCCGCAGAAGCCGAAGCTTACCTCCGGGCATTCATC
GATACTCTTGTACGCCTAGAGGGGTTCAAGTCCGGTTCTAGCCAGGGCTC
CACCGGCTCCAGTCCCGAGGTGCACCGACAATCAATCAGCTACTTGAGCG
ACCATGATCGCGATGAAGAAGAGCTGCGCCAATGGGCCAGTCTGAAAGAA
TACCAGGCCAAGTTTGCCGAAGCAGGGGGCATGTTATCCGAACTGTAATG
CGACACCAGCGGACCACCCTGTCGGTCGTGCGCAAGCTTAGACATCCCTT
GCACTTACGAACGACCGAGTCGACGTCGCGGCCCCCCTAATCGCCATGCA
GAAGCATTCAAAAAGCAGAAGTTAGCAGAGTCCCCTGCAGGCTCCCCAAG
TCCATCAGACCATGCCACACCAGGTCCTCCCGGGTCAGTGGGGAGCACCA
CCATCCCCTCGTCAACCCCAGCGCCGCTATCGGCGGAGTCCATTTGTTCT
ATGCCGACCCTGCGGCTGTTAATAGACGATTTTTTCACCTACATCCATCC
CTTGGTCCCTGTCCCCCATGAGCCCACGTTCCGCGCCGCTTTGGAACGGC
GAGATGACCTCTCTAACACTACCTTTTTGGCCCTCACGGCCGCCATGGTC
GGGACATTAGTGGCGTCCTTTCCGCGGAGGCCCAAGCGGCATTTAAAGAC
GGAGGCGGAGAAGGCAGCATTTCCACACTCGATGGCATTGGTCCGGCGAT
GCCATGATGTTGCAGTCCAAGCTAGAGGCTGTGGCTATCTTGACCGAAGC
GCGACAGTGTACGATGCGGCAACTAGCTATTTTCTCGGGCTTTGCTCCGG
ATATGTTTGGCACATGCGCCGATGTCGTGCATATTTTGCGGAATGCCTTA
CCATGCTACACGTGTATGACCTTTGTCGGCAATCGAATTGCCTTACAGCA
ATGACTCCGCCAAGCCCCTCTTCCTCGTCGCGTTATTCGCAAGACCCTTT
TGGCGGCGCGACCGCCGATCTTCACGTCGACATCATCGAGCAGGAGCTTG
GACGACGCTTATTCTACACCACCCTCGCCGGCTACCGGACGCTGCAGCAG
CTTGGCTCCGGTGACGTGACTATCCATGTGCCTCCTGAAACCCCGACTTC
ACGCTATCCTCCCTTGCCCCTCGAAGTGGATGATGAGTATATCTTTTCAA
CACATGTTGATCCACAACCATCCAATCGGATTTCTCTTCTGGTGGGCTTC
AACGCCAACGTCCGGGTGCTGAGTTCGTATAATACTCTCTCCGCCTGGGA
GACTGCGTTTGGGAGCGGCCAGGTCTTTGATTGGGAACGGCAACGCTCTC
TTATGTGGGAGTGTCTGCAAAAGGCTAAATCTGCCCTTTCTAATGTTCCA
CGGGAATTGGCGATCCAGCTATCCCAAGATCCCGAAATGGACAATGGGCA
AGGCCAATTCGACCCTCCACCTCCTGTGGAGGACCTGCGGGCACATAAAC
GCCATATGCAACTTCAGATTCAAAAGGCGAACATCTACGCAAGCCAGCTG
GGCACCCGGTCATACTTGGTAGAGAAATATTGGACCTTGTACGGGGCATG
GAAATTGCAGCGGAAACAGTCCGACCAGCAAATACCTGTCAGCCCCCGAA
CTACGATTAAGGTTGAAGGTGAGCAGCCGCAGAGTCTGGACACATCCGAT
GCGGATGCCCAATCAGATTATATTGGAAGGATGATGGCGGAAGAGCGTCG
GCTGGTGATCCGTGACCTATTTATCTTGTTGCAATCGGTCAACGAGAGTA
GTATGGAACCCAATGGCGGCAGCTTCATGCTCATGGACCAACGAACCAGA
CTGCGCAAGGCTTGTGACGCCTGTAGTATCCGAAAAGTGAAGACCGCTAA
AATCCGCCAAATTGCATCCACATTACTCAACTTTCCGCATCAGAACATGA
TCACGCCCTCCATGACTGGTCCTCACCCTTTGACCTCCGCAGAAGCCGAA
GCTTACCTCCGGGCATTCATCGATACTCTTGTACGCCTAGAGGGGTTCAA
GTCCGGTTCTAGCCAGGGCTCCACCGGCTCCAGTCCCGAGGTGCACCGAC
AATCAATCAGCTACTTGAGCGACCATGATCGCGATGAAGAAGAGCTGCGC
CAATGGGCCAGTCTGAAAGAATACCAGGCCAAGTTTGCCGAAGCAGGGGG
CATGTTATCCGAACTGTAATGCGACACCAGCGGACCACCCTGTCGGTCGT
GCGCAAGCTTAGACATCCCTTGCACTTACGAACGACCGAGTCGACGTCGC
GGCCCCCCTAATCGCCATGCAGAAGCATTCAAAAAGCAGAAGTTAGCAGA
GTCCCCTGCAGGCTCCCCAAGTCCATCAGACCATGCCACACCAGGTCCTC
CCGGGTCAGTGGGGAGCACCACCATCCCCTCGTCAACCCCAGCGCCGCTA
TCGGCGGAGTCCATTTGTTCTATGCCGACCCTGCGGCTGTTAATAGACGA
TTTTTTCACCTACATCCATCCCTTGGTCCCTGTCCCCCATGAGCCCACGT
TCCGCGCCGCTTTGGAACGGCGAGATGACCTCTCTAACACTACCTTTTTG
GCCCTCACGGCCGCCATGGTCGGGACATTAGTGGCGTCCTTTCCGCGGAG
GCCCAAGCGGCATTTAAAGACGGAGGCGGAGAAGGCAGCATTTCCACACT
CGATGGCATTGGTCCGGCGATGCCATGATGTTGCAGTCCAAGCTAGAGGC
TGTGGCTATCTTGACCGAAGCGCGACAGTGTACGATGCGGCAACTAGCTA
TTTTCTCGGGCTTTGCTCCGGATATGTTTGGCACATGCGCCGATGTCGTG
CATATTTTGCGGAATGCCTTACCATGCTACACGTGTATGACCTTTGTCGG
CAATCGAATTGCCTTACAGCAATGACTCCGCCAAGCCCCTCTTCCTCGTC
GCGTTATTCGCAAGACCCTTTTGGCGGCGCGACCGCCGATCTTCACGTCG
ACATCATCGAGCAGGAGCTTGGACGACGCTTATTCTACACCACCCTCGCC
GGCTACCGGACGCTGCAGCAGCTTGGCTCCGGTGACGTGACTATCCATGT
GCCTCCTGAAACCCCGACTTCACGCTATCCTCCCTTGCCCCTCGAAGTGG
ATGATGAGTATATCTTTTCAACACATGTTGATCCACAACCATCCAATCGG
ATTTCTCTTCTGGTGGGCTTCAACGCCAACGTCCGGGTGCTGAGTTCGTA
TAATACTCTCTCCGCCTGGGAGACTGCGTTTGGGAGCGGCCAGGTCTTTG
ATTGGGAACGGCAACGCTCTCTTATGTGGGAGTGTCTGCAAAAGGCTAAA
TCTGCCCTTTCTAATGTTCCACGGGAATTGGCGATCCAGCTATCCCAAGA
TCCCGAAATGGACAATGGGCAAGGCCAATTCGACCCTCCACCTCCTGTGG
AGGACCTGCGGGCACATAAACGCCATATGCAACTTCAGATTCAAAAGGCG
AACATCTACGCAAGCCAGCTGGGCACCCGGTCATACTTGGTAGAGAAATA
TTGGACCTTGTACGGGGCATGGAAATTGCAGCGGAAACAGTCCGACCAGC
AAATACCTGTCAGCCCCCGAACTACGATTAAGGTTGAAGGTGAGCAGCCG
CAGAGTCTGGACACATCCGATGCGGATGCCCAATCAGATTATATTGGAAG
GATGATGGCGGAAGAGCGTCGGCTGGTGATCCGTGACCTATTTATCTTGT
TGCAATCGGTCAACGAGAGTAGTATGGAACCCAATGGCGGCAGCTTCATG
CTCATGGACCAACGAACCAGACTGCGCAAGGCTTGTGACGCCTGTAGTAT
CCGAAAAGTGAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011671-T1.utr3p1 | KJC3_011671-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011671-T1.utr5p1 | KJC3_011671-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:1281094..1284626 - |
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