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KJC3_011733-T1, KJC3_011733-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011733-T1
Unique NameKJC3_011733-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:1456279..1457615+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011733-T1 ID=KJC3_011733-T1|Name=KJC3_011733-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1337bp|location=Sequence derived from alignment at ch8:1456279..1457615+ (Aspergillus niger KJC3)
ATCACATGATTGTTATCTCCCCACGCGTTTTCCGCCAGCCAAAAGTGGAT
TGGCATTATTGTGTTACTAACTTACTACGTACTACTGAATTATCGACTCG
TCCGGCAGTAACCGTACCATAACAGCATAACTTACCGGCCGGAACATAAG
TGGACACTCGGAAGGAGTCTCCGACCCGACTTCACCCGTGCTTTTTGCCT
GATTTGCCTGATTGTGTTCCCGTCTTTCCCTGAGCAAGCTGGCCGGAGCT
AAGGGAGCTACAGACAGGCTTGAACGACCCCCGATTTCTATTCTTATTCG
TCTCGATTCCCACCCCGGTTCTTCTTCTTGTGATTATGCATGAGCTTCTG
CTCTTCGCCTCGGTTCCCGCGCACCAGCATCATGAGCTTCTTCAACAGCT
GGCCGGGTTGACGGCCATGCAACCCCGTCACCGCCTGGAAAGACGCTTGG
TTTTCAAGGCCTACCGCAAGCCAGGCTTGACCAACACCCGGGTTGGGGCC
AGTCAAGATCTGCAGGGTGTCGAATTGCAGCGCCTTAATAAGATGCTCAA
TGGAGGCATGTTCTATACCCAAGTAGTCGGTCCCGTGGCCAAAGCCGACT
TTGGCGGGAACCCTTCCTCGTCGGGAGATCCAGATGTCTCCATGTCCGGA
TTGGAGGAGAAGCCATCGTCATCTTCGTCTTCTTACAGTTATGAGGATCA
GCCCTGGAAACTCGAATTTAGAGATATCCCCGAGGCAGGCACTCGATCCG
CGGTAACTGCTCGGCTGATGGCTAGTGCCACGCTGCCTAAAGGTGATATC
ACGGCGCCCATGAATGCCTGGGGTTATAGGTTAGTAGCTTCCCATGCCAT
TCGGTGTTATATCAGCTCCTCCATATCTTGATTGGTCCTAGTCGGCTGAC
AAACTGGGTTCAGCTTTGTCACTGAGTACGTGGTGGAAGGAGATGTCTTT
GTTCTCAATGACATCGTTATCTTCCTACACCGTGTCCTGCTTTACCCGAC
TGGGGCGCAGGAATCACATGGACCTCGTCGGCAGCTGCCTGCGTATCAGG
AGCTCTCACCGCTGGAACGGACAGGGAGCTATGTCCTGCAAGCTGCTATC
ACCGTCCAGGATGGCGGGAATCAGGAGATGATGAGGACGGCTTCGCAGCA
TTTGTTCGGGCTTCGCGAGCAGCTCAAGTCGGCTGTCCGTCTAGAAATGG
CGGACCGGCTGTCTCTGGATACGCGAGCGAAGTAATCATGTATTATGATA
TCTTTTTAGCAGTGCTATATACCCCGGAGTTGATGGCTCCCAGTAGATAA
CTCATTCGAAATTCAAATTCTGTCATTAGGAGCCGAA
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Coding sequence (CDS) from alignment at ch8:1456279..1457615+

>KJC3_011733-T1 ID=KJC3_011733-T1|Name=KJC3_011733-T1|organism=Aspergillus niger KJC3|type=CDS|length=1632bp|location=Sequence derived from alignment at ch8:1456279..1457615+ (Aspergillus niger KJC3)
ATGCATGAGCTTCTGCTCTTCGCCTCGGTTCCCGCGCACCAGCATCATGA
GCTTCTTCAACAGCTGGCCGGGTTGACGGCCATGCAACCCCGTCACCGCC
TGGAAAGACGCTTGGTTTTCAAGGCCTACCGCAAGCCAGGCTTGACCAAC
ACCCGGGTTGGGGCCAGTCAAGATCTGCAGGGTGTCGAATTGCAGCGCCT
TAATAAGATGCTCAATGGAGGCATGTTCTATACCCAAGTAGTCGGTCCCG
TGGCCAAAGCCGACTTTGGCGGGAACCCTTCCTCGTCGGGAGATCCAGAT
GTCTCCATGTCCGGATTGGAGGAGAAGCCATCGTCATCTTCGTCTTCTTA
CAGTTATGAGGATCAGCCCTGGAAACTCGAATTTAGAGATATCCCCGAGG
CAGGCACTCGATCCGCGGTAACTGCTCGGCTGATGGCTAGTGCCACGCTG
CCTAAAGGTGATATCACGGCGCCCATGAATGCCTGGGGTTATAGCTTTGT
CACTGAGTACGTGGTGGAAGGAGATGTCTTTGTTCTCAATGACATCGTTA
TCTTCCTACACCGTGTCCTGCTTTACCCGACTGGGGCGCAGGAATCACAT
GGACCTCGTCGGCAGCTGCCTGCGTATCAGGAGCTCTCACCGCTGGAACG
GACAGGGAGCTATGTCCTGCAAGCTGCTATCACCGTCCAGGATGGCGGGA
ATCAGGAGATGATGAGGACGGCTTCGCAGCATTTGTTCGGGCTTCGCGAG
CAGCTCAAGTCGGCTGTCCGTCTAGAAATGGCGGACCGGCTGTCTCTGGA
TACGCGAGCGAAGTAAATGCATGAGCTTCTGCTCTTCGCCTCGGTTCCCG
CGCACCAGCATCATGAGCTTCTTCAACAGCTGGCCGGGTTGACGGCCATG
CAACCCCGTCACCGCCTGGAAAGACGCTTGGTTTTCAAGGCCTACCGCAA
GCCAGGCTTGACCAACACCCGGGTTGGGGCCAGTCAAGATCTGCAGGGTG
TCGAATTGCAGCGCCTTAATAAGATGCTCAATGGAGGCATGTTCTATACC
CAAGTAGTCGGTCCCGTGGCCAAAGCCGACTTTGGCGGGAACCCTTCCTC
GTCGGGAGATCCAGATGTCTCCATGTCCGGATTGGAGGAGAAGCCATCGT
CATCTTCGTCTTCTTACAGTTATGAGGATCAGCCCTGGAAACTCGAATTT
AGAGATATCCCCGAGGCAGGCACTCGATCCGCGGTAACTGCTCGGCTGAT
GGCTAGTGCCACGCTGCCTAAAGGTGATATCACGGCGCCCATGAATGCCT
GGGGTTATAGCTTTGTCACTGAGTACGTGGTGGAAGGAGATGTCTTTGTT
CTCAATGACATCGTTATCTTCCTACACCGTGTCCTGCTTTACCCGACTGG
GGCGCAGGAATCACATGGACCTCGTCGGCAGCTGCCTGCGTATCAGGAGC
TCTCACCGCTGGAACGGACAGGGAGCTATGTCCTGCAAGCTGCTATCACC
GTCCAGGATGGCGGGAATCAGGAGATGATGAGGACGGCTTCGCAGCATTT
GTTCGGGCTTCGCGAGCAGCTCAAGTCGGCTGTCCGTCTAGAAATGGCGG
ACCGGCTGTCTCTGGATACGCGAGCGAAGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
Vocabulary: Molecular Function
TermDefinition
GO:0003712transcription coregulator activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SRB5KJC3_011733Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011733-T1.utr5p1KJC3_011733-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011733-T1.exon1KJC3_011733-T1.exon1Aspergillus niger KJC3exon
KJC3_011733-T1.exon2KJC3_011733-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011733-T1.cdsKJC3_011733-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011733-T1.utr3p1KJC3_011733-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011733-T1KJC3_011733-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR019095
DBxrefPFAM:PF09637
ProductMediator of RNA polymerase II transcription subunit 18
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:1456279..1457615 +
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