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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:1563337..1564680- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011773-T1 ID=KJC3_011773-T1|Name=KJC3_011773-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1344bp|location=Sequence derived from alignment at ch8:1563337..1564680- (Aspergillus niger KJC3)
TCTAAAGAAATAAGAGCGGTCTTATTCGAGCCTAATGTCCTTTTCCAACG
CCGCCTAATAGTTCATATTCCCACCGAGCGCTTTATCTGAAATTCAGAAC
GCACCAGGAACTGAAGCCTAATTATAATGCTCGGCCTAGGGGCGTATGAA
AGCAGCAGTGATGAAGAAGTGGGAAATAATTTGCCCTCAGTACCATCGAA
GGTAAAAGGAGCATTATGCTGTGATATCGGCCTCTACTAACATGAAACCG
GCAGAAGATCGCTAGCCAGCAAGCACAGCCGCAGGAAGTGACTAAAGCTA
CAGGTGATTGGAGATTTAATCTACTTTTTTCTGAAACTAGTGGGACGTAT
TTAACGTGTTACCAAAGCAGAAATCCCCAACGAAGCCACACCATCGAAAG
AGATACCTGCTCCAGACACAGACAGGCCTGTTCTTGGACCGACGCATGAA
GGCTCACAAGATCCACAACAGCAACCAGCCGAAAATTCACAAGTCTTCTT
AGCAGACCGAGCATTGATCCATGACCTAACACTTCCTCCGTTACCAAATC
TAGACATACCACCATCTCCCCCTGGCTCTCCTAACCCTGCAGCGAATGCC
AAAATCGCACACTTCTTGACCTTGAAGAAACAGGGCATGCATTTCAACGA
AAAGTTAGCCGGGTCTACATCCCTCAAGAACCCAAGTTTACTGAAGAAAA
TGATGGATCATGCCGGAATTGATGATCAAGCGCAGTATCACACATCATTA
CCACCTGAAGTATGGAGTATCAACGATCTGCCAAGTTGGGGGTATAAAGA
GGAACTTTTGAAAGCGCAGAGGGAAATTCAGATTGGGGCTGAAGAAAGGA
AGTCCGCAGGACAAAGGGATGCTATCAATTTTGTGGCTGCCACGCCTAGC
GAGTCCTCCCGTACAGGCCCTATTTCTAGCTCAAGGGCAAAACAAAGGTA
ATATGCGATGGATATTCCAGAGTGCAAGAATCTCTGCCAATGACAGCCGG
GACAGTACGACCCGGCGTACAATGCTTGGGAAGCAAAGAAAGGTCCTCCG
GCCCCAAAGCCTATGATGGGAGGCCTCCTCGTGAAAGGAAAGTTATCTGC
CGGTGATAGTCTTTCTGTCACAGAATAACTATATAACGTCTATTTCTAGG
GCCAAAAAAAGGAGAACGTAGCACTAGTGAATACCCATTGTTTTGCAGGG
ACGACTGTTTCTTAGTAGCTGGAGGAGGGACTCAGCCTTCTTTAAGGGGG
GCAATCTATAAAATATCTTTCCCCTCCCTCCTCCACTAAACAAGTGTCTC
ATCAAATCAGTTCAAATATAAGTAACAGGCAATGGAAATATATA back to topCoding sequence (CDS) from alignment at ch8:1563337..1564680- >KJC3_011773-T1 ID=KJC3_011773-T1|Name=KJC3_011773-T1|organism=Aspergillus niger KJC3|type=CDS|length=2115bp|location=Sequence derived from alignment at ch8:1563337..1564680- (Aspergillus niger KJC3)
AAATCCCCAACGAAGCCACACCATCGAAAGAGATACCTGCTCCAGACACA
GACAGGCCTGTTCTTGGACCGACGCATGAAGGCTCACAAGATCCACAACA
GCAACCAGCCGAAAATTCACAAGTCTTCTTAGCAGACCGAGCATTGATCC
ATGACCTAACACTTCCTCCGTTACCAAATCTAGACATACCACCATCTCCC
CCTGGCTCTCCTAACCCTGCAGCGAATGCCAAAATCGCACACTTCTTGAC
CTTGAAGAAACAGGGCATGCATTTCAACGAAAAGTTAGCCGGGTCTACAT
CCCTCAAGAACCCAAGTTTACTGAAGAAAATGATGGATCATGCCGGAATT
GATGATCAAGCGCAGTATCACACATCATTACCACCTGAAGTATGGAGTAT
CAACGATCTGCCAAGTTGGGGGTATAAAGAGGAACTTTTGAAAGCGCAGA
GGGAAATTCAGATTGGGGCTGAAGAAAGGAAGTCCGCAGGACAAAGGGAT
GCTATCAATTTTGTGGCTGCCACGCCTAGCGAGTCCTCCCGTACAGGCCC
TATTTCTAGCTCAAGGGCAAAACAAAGGTAAAAGATCGCTAGCCAGCAAG
CACAGCCGCAGGAAGTGACTAAAGCTACAGATGCTCGGCCTAGGGGCGTA
TGAAAGCAGCAGTGATGAAGAAGTGGGAAATAATTTGCCCTCAGTACCAT
CGAAGAAATCCCCAACGAAGCCACACCATCGAAAGAGATACCTGCTCCAG
ACACAGACAGGCCTGTTCTTGGACCGACGCATGAAGGCTCACAAGATCCA
CAACAGCAACCAGCCGAAAATTCACAAGTCTTCTTAGCAGACCGAGCATT
GATCCATGACCTAACACTTCCTCCGTTACCAAATCTAGACATACCACCAT
CTCCCCCTGGCTCTCCTAACCCTGCAGCGAATGCCAAAATCGCACACTTC
TTGACCTTGAAGAAACAGGGCATGCATTTCAACGAAAAGTTAGCCGGGTC
TACATCCCTCAAGAACCCAAGTTTACTGAAGAAAATGATGGATCATGCCG
GAATTGATGATCAAGCGCAGTATCACACATCATTACCACCTGAAGTATGG
AGTATCAACGATCTGCCAAGTTGGGGGTATAAAGAGGAACTTTTGAAAGC
GCAGAGGGAAATTCAGATTGGGGCTGAAGAAAGGAAGTCCGCAGGACAAA
GGGATGCTATCAATTTTGTGGCTGCCACGCCTAGCGAGTCCTCCCGTACA
GGCCCTATTTCTAGCTCAAGGGCAAAACAAAGGTAAAAGATCGCTAGCCA
GCAAGCACAGCCGCAGGAAGTGACTAAAGCTACAGATGCTCGGCCTAGGG
GCGTATGAAAGCAGCAGTGATGAAGAAGTGGGAAATAATTTGCCCTCAGT
ACCATCGAAGAAATCCCCAACGAAGCCACACCATCGAAAGAGATACCTGC
TCCAGACACAGACAGGCCTGTTCTTGGACCGACGCATGAAGGCTCACAAG
ATCCACAACAGCAACCAGCCGAAAATTCACAAGTCTTCTTAGCAGACCGA
GCATTGATCCATGACCTAACACTTCCTCCGTTACCAAATCTAGACATACC
ACCATCTCCCCCTGGCTCTCCTAACCCTGCAGCGAATGCCAAAATCGCAC
ACTTCTTGACCTTGAAGAAACAGGGCATGCATTTCAACGAAAAGTTAGCC
GGGTCTACATCCCTCAAGAACCCAAGTTTACTGAAGAAAATGATGGATCA
TGCCGGAATTGATGATCAAGCGCAGTATCACACATCATTACCACCTGAAG
TATGGAGTATCAACGATCTGCCAAGTTGGGGGTATAAAGAGGAACTTTTG
AAAGCGCAGAGGGAAATTCAGATTGGGGCTGAAGAAAGGAAGTCCGCAGG
ACAAAGGGATGCTATCAATTTTGTGGCTGCCACGCCTAGCGAGTCCTCCC
GTACAGGCCCTATTTCTAGCTCAAGGGCAAAACAAAGGTAAAAGATCGCT
AGCCAGCAAGCACAGCCGCAGGAAGTGACTAAAGCTACAGATGCTCGGCC
TAGGGGCGTATGAAAGCAGCAGTGATGAAGAAGTGGGAAATAATTTGCCC
TCAGTACCATCGAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011773-T1.utr3p1 | KJC3_011773-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011773-T1.utr5p1 | KJC3_011773-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR012479 |
| DBxref | PFAM:PF07818 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:1563337..1564680 - |
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