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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:1826515..1828491+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011841-T1 ID=KJC3_011841-T1|Name=KJC3_011841-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1977bp|location=Sequence derived from alignment at ch8:1826515..1828491+ (Aspergillus niger KJC3)
GTTTATGAGTGTGAACTAGTAATAATTAACTGCTACCGCGCAGCTCCCAG
AGTCGCCCAGCCCCATTGATTCCACTTTGGCCCTGGTGTTAGTGTTTTTC
TACCCTCCAGTCAGTCTTTTTTACAAAGCCTTATCAAGAAACAATTTCTC
CGAACTCTCCAGCCGTCCCTAGCACCAACGCATTTCATCTTCGGCATTGG
CCGCACACCTGTCGGAGCTCCACTTGACCACCCATAATGTCTTCTTCAGA
CGAGGACGTTGTTCGCCGTCCGGGGCGCAGTGCAGGTGCCGGTCAACCAG
GCAGTCCGTCTGCAAGTGAACACAGTGAAGCTCCGGCGCGAAGCCAGAGT
CCCGCGGGCTCGGATGCGGGCAACGCGGACGGCTACGATGATGCGGATCT
GTTTGGTTCGGACGCTTCCGATGGAGGGTTTGGCGATGATAATGAGTATG
ATCAATTGTCCCGGTTAGTGAGAAGACATGCATTGACTGTCATACAGGCG
ACCCCAGCGGACGCTAGACGACGAAGAACTCGATTCGGGAGATGACGTGG
ATCGCAATGATCGGGTTGGAGAGCCCATGGACTATGAAGGAGGCGCAGAC
TATGAGGAAACGGTGAATATCATGGACATGAGCTTGAGCCGGGCGCCGGA
GCCTGTGACTTCAAACGGCGAGGTATGTTTCACAAGCATCCATCTTCTGC
ATGTTGCCAAGCTCACCATTGCCAACCCTAGGTCTACACAATGCCAGTCC
CCCCTTTCCTGTCCGTTGAAACGGAAGAGTTCAACCCAGAGACCTATGTT
CCACCTCCATTTACGACAGCCGCCACGTCGCTCTGCTGGCGCCATGACCC
GCAGGACGAGTCGCTCCTGCAATCGAATGCTCGTATCATCCGCTGGGAGG
ATGGTTCCATGACATTGCAGCTGGCGTCCGCGCCAAAGGAGCAGTACCGT
ATCTCAACTAAGCCACTGGCGCCTCTCAGCAAGTCCGGCGAATATGACAC
CAAGTTAGATTCCCATGTTTATCTGGGAGCAGCCGCAGAAGCCTCTTCTG
TCTTCCGGCTGACTTCCCACCTCACCCATGGACTCACGGTTTACCCGACA
ACTGTGGAAACCGACGATGCCGTGCAGCGTCTCCAGGAGTCGCTGGCAGC
AGCAGCCCGGGGAGGCAAGAAGACGCTGGACGGATCGGCGCCGGTTATCG
AAGTCAAGGAGGACCCCGAACTTGCCAAGCGGCAGGCAGAAATGGCTGAG
CGCGAGAAGCTGAAGGCTGCTCGCCGCCGCCAGCAGCTTCAGGACCGCGA
GATGGACCGTGGCCGTCGTCACGGATTCACCCAGCGCACCGGAGGTGCTG
GTCTCACAGTGGGTGGCTTGGAAGATGACGACGGTCTCCTGACGACCCGG
CCTCGCGCGAAGAAGCCTCGCAGGCCAAATCGTCGGGGCGAGATCTACAC
CGACGACGAAGAAGAATACGACCGTCGCGGACGCACTCGCGAGGACGAAT
ACGACGAAGACGATGGTTTCCTGGTGGGCAGTGACGAAGAGCCGGAAATC
GTCGACGATGACGACGAAGAGGATGTCCTGGAGGATGAAGACGAGGACGC
CGAGGGCGAGGAGGAAGACCTTCCGCCCGCCAGACCCCGACAGAAACGAG
CCTCCCCTGAGGCTCCTGAGAGAGGCACTCCTCCAACCCGGAAGAAGAAC
CGCTACATTGTGGATGATGATGATGAAGAGTAATGGCTCTTCATTTCTAA
GCCACATTGACATTCTTACTTGCTTCTTCTAATGACATTGTAACTGTATC
ATCCATTCTGGGAGTCATTCTTCGGGCGCATGCATGGTCGTCACCACCCA
TCCAATGTTATATTCTTGATATCATACCAGAATTTTACAAAATTAAGAAA
TACCCTATGGACTCGGTGATATGCAAATTTGTACATACCGTGCCGCTAGA
TCAATCTACATTGCTAATATATCACCA back to topCoding sequence (CDS) from alignment at ch8:1826515..1828491+ >KJC3_011841-T1 ID=KJC3_011841-T1|Name=KJC3_011841-T1|organism=Aspergillus niger KJC3|type=CDS|length=4158bp|location=Sequence derived from alignment at ch8:1826515..1828491+ (Aspergillus niger KJC3)
ATGTCTTCTTCAGACGAGGACGTTGTTCGCCGTCCGGGGCGCAGTGCAGG
TGCCGGTCAACCAGGCAGTCCGTCTGCAAGTGAACACAGTGAAGCTCCGG
CGCGAAGCCAGAGTCCCGCGGGCTCGGATGCGGGCAACGCGGACGGCTAC
GATGATGCGGATCTGTTTGGTTCGGACGCTTCCGATGGAGGGTTTGGCGA
TGATAATGAGCGACCCCAGCGGACGCTAGACGACGAAGAACTCGATTCGG
GAGATGACGTGGATCGCAATGATCGGGTTGGAGAGCCCATGGACTATGAA
GGAGGCGCAGACTATGAGGAAACGGTGAATATCATGGACATGAGCTTGAG
CCGGGCGCCGGAGCCTGTGACTTCAAACGGCGAGGTCTACACAATGCCAG
TCCCCCCTTTCCTGTCCGTTGAAACGGAAGAGTTCAACCCAGAGACCTAT
GTTCCACCTCCATTTACGACAGCCGCCACGTCGCTCTGCTGGCGCCATGA
CCCGCAGGACGAGTCGCTCCTGCAATCGAATGCTCGTATCATCCGCTGGG
AGGATGGTTCCATGACATTGCAGCTGGCGTCCGCGCCAAAGGAGCAGTAC
CGTATCTCAACTAAGCCACTGGCGCCTCTCAGCAAGTCCGGCGAATATGA
CACCAAGTTAGATTCCCATGTTTATCTGGGAGCAGCCGCAGAAGCCTCTT
CTGTCTTCCGGCTGACTTCCCACCTCACCCATGGACTCACGGTTTACCCG
ACAACTGTGGAAACCGACGATGCCGTGCAGCGTCTCCAGGAGTCGCTGGC
AGCAGCAGCCCGGGGAGGCAAGAAGACGCTGGACGGATCGGCGCCGGTTA
TCGAAGTCAAGGAGGACCCCGAACTTGCCAAGCGGCAGGCAGAAATGGCT
GAGCGCGAGAAGCTGAAGGCTGCTCGCCGCCGCCAGCAGCTTCAGGACCG
CGAGATGGACCGTGGCCGTCGTCACGGATTCACCCAGCGCACCGGAGGTG
CTGGTCTCACAGTGGGTGGCTTGGAAGATGACGACGGTCTCCTGACGACC
CGGCCTCGCGCGAAGAAGCCTCGCAGGCCAAATCGTCGGGGCGAGATCTA
CACCGACGACGAAGAAGAATACGACCGTCGCGGACGCACTCGCGAGGACG
AATACGACGAAGACGATGGTTTCCTGGTGGGCAGTGACGAAGAGCCGGAA
ATCGTCGACGATGACGACGAAGAGGATGTCCTGGAGGATGAAGACGAGGA
CGCCGAGGGCGAGGAGGAAGACCTTCCGCCCGCCAGACCCCGACAGAAAC
GAGCCTCCCCTGAGGCTCCTGAGAGAGGCACTCCTCCAACCCGGAAGAAG
AACCGCTACATTGTGGATGATGATGATGAAGAGTAAATGTCTTCTTCAGA
CGAGGACGTTGTTCGCCGTCCGGGGCGCAGTGCAGGTGCCGGTCAACCAG
GCAGTCCGTCTGCAAGTGAACACAGTGAAGCTCCGGCGCGAAGCCAGAGT
CCCGCGGGCTCGGATGCGGGCAACGCGGACGGCTACGATGATGCGGATCT
GTTTGGTTCGGACGCTTCCGATGGAGGGTTTGGCGATGATAATGAGCGAC
CCCAGCGGACGCTAGACGACGAAGAACTCGATTCGGGAGATGACGTGGAT
CGCAATGATCGGGTTGGAGAGCCCATGGACTATGAAGGAGGCGCAGACTA
TGAGGAAACGGTGAATATCATGGACATGAGCTTGAGCCGGGCGCCGGAGC
CTGTGACTTCAAACGGCGAGGTCTACACAATGCCAGTCCCCCCTTTCCTG
TCCGTTGAAACGGAAGAGTTCAACCCAGAGACCTATGTTCCACCTCCATT
TACGACAGCCGCCACGTCGCTCTGCTGGCGCCATGACCCGCAGGACGAGT
CGCTCCTGCAATCGAATGCTCGTATCATCCGCTGGGAGGATGGTTCCATG
ACATTGCAGCTGGCGTCCGCGCCAAAGGAGCAGTACCGTATCTCAACTAA
GCCACTGGCGCCTCTCAGCAAGTCCGGCGAATATGACACCAAGTTAGATT
CCCATGTTTATCTGGGAGCAGCCGCAGAAGCCTCTTCTGTCTTCCGGCTG
ACTTCCCACCTCACCCATGGACTCACGGTTTACCCGACAACTGTGGAAAC
CGACGATGCCGTGCAGCGTCTCCAGGAGTCGCTGGCAGCAGCAGCCCGGG
GAGGCAAGAAGACGCTGGACGGATCGGCGCCGGTTATCGAAGTCAAGGAG
GACCCCGAACTTGCCAAGCGGCAGGCAGAAATGGCTGAGCGCGAGAAGCT
GAAGGCTGCTCGCCGCCGCCAGCAGCTTCAGGACCGCGAGATGGACCGTG
GCCGTCGTCACGGATTCACCCAGCGCACCGGAGGTGCTGGTCTCACAGTG
GGTGGCTTGGAAGATGACGACGGTCTCCTGACGACCCGGCCTCGCGCGAA
GAAGCCTCGCAGGCCAAATCGTCGGGGCGAGATCTACACCGACGACGAAG
AAGAATACGACCGTCGCGGACGCACTCGCGAGGACGAATACGACGAAGAC
GATGGTTTCCTGGTGGGCAGTGACGAAGAGCCGGAAATCGTCGACGATGA
CGACGAAGAGGATGTCCTGGAGGATGAAGACGAGGACGCCGAGGGCGAGG
AGGAAGACCTTCCGCCCGCCAGACCCCGACAGAAACGAGCCTCCCCTGAG
GCTCCTGAGAGAGGCACTCCTCCAACCCGGAAGAAGAACCGCTACATTGT
GGATGATGATGATGAAGAGTAAATGTCTTCTTCAGACGAGGACGTTGTTC
GCCGTCCGGGGCGCAGTGCAGGTGCCGGTCAACCAGGCAGTCCGTCTGCA
AGTGAACACAGTGAAGCTCCGGCGCGAAGCCAGAGTCCCGCGGGCTCGGA
TGCGGGCAACGCGGACGGCTACGATGATGCGGATCTGTTTGGTTCGGACG
CTTCCGATGGAGGGTTTGGCGATGATAATGAGCGACCCCAGCGGACGCTA
GACGACGAAGAACTCGATTCGGGAGATGACGTGGATCGCAATGATCGGGT
TGGAGAGCCCATGGACTATGAAGGAGGCGCAGACTATGAGGAAACGGTGA
ATATCATGGACATGAGCTTGAGCCGGGCGCCGGAGCCTGTGACTTCAAAC
GGCGAGGTCTACACAATGCCAGTCCCCCCTTTCCTGTCCGTTGAAACGGA
AGAGTTCAACCCAGAGACCTATGTTCCACCTCCATTTACGACAGCCGCCA
CGTCGCTCTGCTGGCGCCATGACCCGCAGGACGAGTCGCTCCTGCAATCG
AATGCTCGTATCATCCGCTGGGAGGATGGTTCCATGACATTGCAGCTGGC
GTCCGCGCCAAAGGAGCAGTACCGTATCTCAACTAAGCCACTGGCGCCTC
TCAGCAAGTCCGGCGAATATGACACCAAGTTAGATTCCCATGTTTATCTG
GGAGCAGCCGCAGAAGCCTCTTCTGTCTTCCGGCTGACTTCCCACCTCAC
CCATGGACTCACGGTTTACCCGACAACTGTGGAAACCGACGATGCCGTGC
AGCGTCTCCAGGAGTCGCTGGCAGCAGCAGCCCGGGGAGGCAAGAAGACG
CTGGACGGATCGGCGCCGGTTATCGAAGTCAAGGAGGACCCCGAACTTGC
CAAGCGGCAGGCAGAAATGGCTGAGCGCGAGAAGCTGAAGGCTGCTCGCC
GCCGCCAGCAGCTTCAGGACCGCGAGATGGACCGTGGCCGTCGTCACGGA
TTCACCCAGCGCACCGGAGGTGCTGGTCTCACAGTGGGTGGCTTGGAAGA
TGACGACGGTCTCCTGACGACCCGGCCTCGCGCGAAGAAGCCTCGCAGGC
CAAATCGTCGGGGCGAGATCTACACCGACGACGAAGAAGAATACGACCGT
CGCGGACGCACTCGCGAGGACGAATACGACGAAGACGATGGTTTCCTGGT
GGGCAGTGACGAAGAGCCGGAAATCGTCGACGATGACGACGAAGAGGATG
TCCTGGAGGATGAAGACGAGGACGCCGAGGGCGAGGAGGAAGACCTTCCG
CCCGCCAGACCCCGACAGAAACGAGCCTCCCCTGAGGCTCCTGAGAGAGG
CACTCCTCCAACCCGGAAGAAGAACCGCTACATTGTGGATGATGATGATG
AAGAGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016593 | Cdc73/Paf1 complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006368 | transcription elongation from RNA polymerase II promoter |
| GO:0016570 | histone modification |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011841-T1.utr5p1 | KJC3_011841-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011841-T1.utr3p1 | KJC3_011841-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007149 |
| DBxref | PFAM:PF04004 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:1826515..1828491 + |
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