You are here

Home

KJC3_011846-T1, KJC3_011846-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011846-T1
Unique NameKJC3_011846-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:1836841..1837890-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011846-T1 ID=KJC3_011846-T1|Name=KJC3_011846-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1050bp|location=Sequence derived from alignment at ch8:1836841..1837890- (Aspergillus niger KJC3)
CTCATCTTTCTCTCTTTCGACTGGAAAGTCAACCATCCTTCCAACCTCGG
ACATACTGCAGCCCACAAATTTGCAATCCTCCATAAATCAGATACTTGAC
TGAATTTGGATCAGCTTTTTCTAGATCCCCAAGTTGATCATGTCAGGTCA
TCACCATCATCACGATCATGGCGGCCATTGCCACGGAGAAGATGGCCATG
ATCACTCCAACGACATCACCCCTGCCATCCAATCCCTCCTCTACTCCCAA
ATCCAATTTGATGCGATCACTACATTGAACGGTAGGCAACCCCCGAGGGA
ACCCCTTCTGCATGTGGTACTGTACCTGCTAACTGGAGTCCTACCTGCAG
AGGCCAGTCCCAAGTCTGGCGCCGCGATTGTGAAAAAGACATGGTCTGAA
AGACTGAACGATGAACCGGAGCTGGAAAGCGACGCGGATGAACAGTTGCT
GATGTATATTCCGTATGTTATCCACCCCATTTTCTGTTGTGGGTTTCGAT
CGGATTTGCTGTTTGTGATATGGTTTTTACCCCGCCAAATGCCCCTCATC
TCAAGTTCCATGTCACGGATTCAATATGCACCATACTATTGCACGACAAC
CGCACTGATTATCCACTAACCAACCATTTAACTTCTAGATTCACCGGCCA
AGTCAAAGTCCACTCCCTCCTCATCTACACTGCCCCCTCCCCATCCGCCC
CGAAGACCCTAAAGCTATTCAAGAACCGCGACGACCTGGACTTCGGAACA
GCCTCGGACCTAAAGCCCACGCAGACAGTCGAAATACCCCAACCTGTGCC
GGGTGCAGATGTTTTCGAGTTGCCGCTGAACCGGGCACATTGGAACGCGA
CTACTTCCATCACTCTCTTCTTCGAGGATAATTGGAGCGATGGGGAAGAA
GACGTCACCAAGGTCGGGTATATTGGTTTCAAGGGACAGTTCATGGCATT
GAATAGGGAGCCGATCAGTTTCTTGTATGAGGCGGCTGCGAACCCAGGTG
ATCATGTTGCTATTCAGGGTGTGAATGGAGTGGGGAGCAGGATTCTGTGA
back to top

Coding sequence (CDS) from alignment at ch8:1836841..1837890-

>KJC3_011846-T1 ID=KJC3_011846-T1|Name=KJC3_011846-T1|organism=Aspergillus niger KJC3|type=CDS|length=1998bp|location=Sequence derived from alignment at ch8:1836841..1837890- (Aspergillus niger KJC3)
ATTCACCGGCCAAGTCAAAGTCCACTCCCTCCTCATCTACACTGCCCCCT
CCCCATCCGCCCCGAAGACCCTAAAGCTATTCAAGAACCGCGACGACCTG
GACTTCGGAACAGCCTCGGACCTAAAGCCCACGCAGACAGTCGAAATACC
CCAACCTGTGCCGGGTGCAGATGTTTTCGAGTTGCCGCTGAACCGGGCAC
ATTGGAACGCGACTACTTCCATCACTCTCTTCTTCGAGGATAATTGGAGC
GATGGGGAAGAAGACGTCACCAAGGTCGGGTATATTGGTTTCAAGGGACA
GTTCATGGCATTGAATAGGGAGCCGATCAGTTTCTTGTATGAGGCGGCTG
CGAACCCAGGTGATCATGTTGCTATTCAGGGTGTGAATGGAGTGGGGAGC
AGGATTCTGTGAAGGCCAGTCCCAAGTCTGGCGCCGCGATTGTGAAAAAG
ACATGGTCTGAAAGACTGAACGATGAACCGGAGCTGGAAAGCGACGCGGA
TGAACAGTTGCTGATGTATATTCCATGTCAGGTCATCACCATCATCACGA
TCATGGCGGCCATTGCCACGGAGAAGATGGCCATGATCACTCCAACGACA
TCACCCCTGCCATCCAATCCCTCCTCTACTCCCAAATCCAATTTGATGCG
ATCACTACATTGAACGATTCACCGGCCAAGTCAAAGTCCACTCCCTCCTC
ATCTACACTGCCCCCTCCCCATCCGCCCCGAAGACCCTAAAGCTATTCAA
GAACCGCGACGACCTGGACTTCGGAACAGCCTCGGACCTAAAGCCCACGC
AGACAGTCGAAATACCCCAACCTGTGCCGGGTGCAGATGTTTTCGAGTTG
CCGCTGAACCGGGCACATTGGAACGCGACTACTTCCATCACTCTCTTCTT
CGAGGATAATTGGAGCGATGGGGAAGAAGACGTCACCAAGGTCGGGTATA
TTGGTTTCAAGGGACAGTTCATGGCATTGAATAGGGAGCCGATCAGTTTC
TTGTATGAGGCGGCTGCGAACCCAGGTGATCATGTTGCTATTCAGGGTGT
GAATGGAGTGGGGAGCAGGATTCTGTGAAGGCCAGTCCCAAGTCTGGCGC
CGCGATTGTGAAAAAGACATGGTCTGAAAGACTGAACGATGAACCGGAGC
TGGAAAGCGACGCGGATGAACAGTTGCTGATGTATATTCCATGTCAGGTC
ATCACCATCATCACGATCATGGCGGCCATTGCCACGGAGAAGATGGCCAT
GATCACTCCAACGACATCACCCCTGCCATCCAATCCCTCCTCTACTCCCA
AATCCAATTTGATGCGATCACTACATTGAACGATTCACCGGCCAAGTCAA
AGTCCACTCCCTCCTCATCTACACTGCCCCCTCCCCATCCGCCCCGAAGA
CCCTAAAGCTATTCAAGAACCGCGACGACCTGGACTTCGGAACAGCCTCG
GACCTAAAGCCCACGCAGACAGTCGAAATACCCCAACCTGTGCCGGGTGC
AGATGTTTTCGAGTTGCCGCTGAACCGGGCACATTGGAACGCGACTACTT
CCATCACTCTCTTCTTCGAGGATAATTGGAGCGATGGGGAAGAAGACGTC
ACCAAGGTCGGGTATATTGGTTTCAAGGGACAGTTCATGGCATTGAATAG
GGAGCCGATCAGTTTCTTGTATGAGGCGGCTGCGAACCCAGGTGATCATG
TTGCTATTCAGGGTGTGAATGGAGTGGGGAGCAGGATTCTGTGAAGGCCA
GTCCCAAGTCTGGCGCCGCGATTGTGAAAAAGACATGGTCTGAAAGACTG
AACGATGAACCGGAGCTGGAAAGCGACGCGGATGAACAGTTGCTGATGTA
TATTCCATGTCAGGTCATCACCATCATCACGATCATGGCGGCCATTGCCA
CGGAGAAGATGGCCATGATCACTCCAACGACATCACCCCTGCCATCCAAT
CCCTCCTCTACTCCCAAATCCAATTTGATGCGATCACTACATTGAACG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_011846KJC3_011846Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011846-T1KJC3_011846-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011846-T1.cdsKJC3_011846-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011846-T1.exon3KJC3_011846-T1.exon3Aspergillus niger KJC3exon
KJC3_011846-T1.exon2KJC3_011846-T1.exon2Aspergillus niger KJC3exon
KJC3_011846-T1.exon1KJC3_011846-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011846-T1.utr5p1KJC3_011846-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR008979
DBxrefInterPro:IPR010400
DBxrefInterPro:IPR037047
DBxrefPFAM:PF06201
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:1836841..1837890 -
Powered by Drupal