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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:1840665..1842831+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011848-T1 ID=KJC3_011848-T1|Name=KJC3_011848-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2167bp|location=Sequence derived from alignment at ch8:1840665..1842831+ (Aspergillus niger KJC3)
CCCAGCTTGCTTTCTGCCTGTTGGGCAAATTTCCTGGTCGCATAAATACC
CTCAGGGCCTGCGAAACCTTGGCATTCTTCTCCACCTTCTAGATAGCAAG
TTTGCGATTCCAACGCTGCCTAAGTTGCTCTCACGATGTCGGAAGAAGAC
AAGACTGTAGGTTGTCCTCTATATCCGCTCCTTATACCTCATGCCGGCCA
CTCACTAGCAGCCAGACCCCCAATAAACTCTCCACTGGACCACTCAGTCC
CAAACCCGAGTCGCCGACTACCGCGCGCCCTCTAGATTTTGATGATGAAC
CTCAGGAAACCGGTGTCACTGCAGCACCGTCAACAGCCCCTGCTCAGCAG
GGCGCTGCGGAAGCTGCCCCGCCTAAGCCACCCCGCCCATTGAGCCCCCG
GCAAGAGGCCGAGAATACCCTCAAGGAAGCATTCCCCTCTATCGAGGCAT
CGGTGATCAAAGCAGTGTTGGTGGCCAGTAACTGGGATGTGGAACGGTCA
TTCCATGCTTTGCTTAGTACGTGTGAACTGCGACGGAAAGCACTGCTATG
CGCGGTCACTAACAAGTCCCTCTAGGCATGACGGATCCCAGTGCTGTCGA
ACAAGATGCGCCGCCCCCGAAGCCACCACGCCCAACTGCTGCGCAGAGGC
AGCTAGAAGCAGATGAGATGTATGCCCGTCAGCTGGCCGAGCACTACAAC
CGTCCTGCGCGCCAACCCCGTTGGGACAACGAGTACCCACAGCAGCGGCC
ACGAAGAGGAAGCGATGGATCGGAGGAAAAAGAATACAGCTTTTTCGATG
GTCAGTGATATGGATCTTTTCTACGTCATCTTGGTTGCTAAATGATGGCC
TGTATAGATGATCTCCCTGTGATCCGTGAGAACCTTCGCAAAGGATTCTT
GGATACCCAGACGAAGGTCAACTCGTGGGTCCAGAATCTGAAGAAACGCC
TCGATGGCGAAACACCTGAGGCCGGACCTTCTGGTCAAGGCCAGCCCGAT
GAGAACTATGGTAGACCTAGACGGAGCGGGGACCTAGGTCGTCGGAGCGG
CGATCGCGAACGCTACGATGCCGATCATCGCATCCTGAACGACGACTTTT
CCTCACTTGAACTGAGAGATGCGGAAGGTACGGTTACCCCGATCAGACCC
TGATCATGCATCAAATTCGCTAGCGAATGCTAACCTCCGTTCGCAGCTCC
TCCTCCGCGCCCCCCGCGCCCTCTCGCCAATCCCGATCTTTTCAAAACCT
CTTCATCTTCCCCTGATCGACGCAAGGTCCTCTTCCAGGAGGGACCACCT
ACCGAGATTGACAACCTCTACGATGCCTCTGAGCCCGTCAGACGTACGTC
TCCCGCGACAGGCAAGTCGAGCAAGTGGCAACCTCTGTCGACTGTTGACC
CTTCGCCGGTCGGGGAACATGACCCGTTCAGTCTTGGGGACAGTGACGAT
GAGAAAGAAAAGGAAGCCAAGACTAAGGAGCAGAGCACAGCTGAGGCTGG
GCCGGCCAGCGAAGCGTCGAAAGACAGCAGCAAGGCCGAGAATGCTGGCA
AGTCGTAGGACTTGTTCAGTAATCGATTAATAATTATGAGAGTTTTCCTT
TTTGCCTTCTCCCCGACACATGCCGTTTCATCCCTAGCGCCTGTCTGCTA
CATGTATTCTTCATACCATTACCCTGATAATGGCCCTATGGCCGACGTTA
ATGATACCAAAGACTGCACTAGTGGGAAGTCCCAGAAACCGTTCAATCCC
CAACGAGGATTTCATGAATACGATGAATAATACCACCATTAGTAGTAGAT
TGCAGAATCCATCATATTCCAATCTAATAGGGAAAAACGGGTATCACAAG
GAAAACCAAACGAAAAGAAAGCAGAAAACGCCATAGATACCTAGAGCACT
AAACACACAACCTCAACCCCCAAAAAGAATTCACTCCGGCAAACCCTGCT
GCTGCTCAGTCGCGAACCCGCGCGACGCACCAGCTTCTTTTCTTAGATCC
TTAATGACCGCCTGATAGACAGCGTCAGCTTCCAGAACCTCCCGGAACAA
AGTAAAGGCATAGCACATGATAGATGAGCAAGAACTCACAGCGAGAGCAT
CCGGATTGACCCCATTCTCAATCAAGGACACACAAAGCGACAGCTCCGTG
CGGTCTAAATTAGTGTT back to topCoding sequence (CDS) from alignment at ch8:1840665..1842831+ >KJC3_011848-T1 ID=KJC3_011848-T1|Name=KJC3_011848-T1|organism=Aspergillus niger KJC3|type=CDS|length=5895bp|location=Sequence derived from alignment at ch8:1840665..1842831+ (Aspergillus niger KJC3)
ATGTCGGAAGAAGACAAGACTACCCCCAATAAACTCTCCACTGGACCACT
CAGTCCCAAACCCGAGTCGCCGACTACCGCGCGCCCTCTAGATTTTGATG
ATGAACCTCAGGAAACCGGTGTCACTGCAGCACCGTCAACAGCCCCTGCT
CAGCAGGGCGCTGCGGAAGCTGCCCCGCCTAAGCCACCCCGCCCATTGAG
CCCCCGGCAAGAGGCCGAGAATACCCTCAAGGAAGCATTCCCCTCTATCG
AGGCATCGGTGATCAAAGCAGTGTTGGTGGCCAGTAACTGGGATGTGGAA
CGGTCATTCCATGCTTTGCTTAGCATGACGGATCCCAGTGCTGTCGAACA
AGATGCGCCGCCCCCGAAGCCACCACGCCCAACTGCTGCGCAGAGGCAGC
TAGAAGCAGATGAGATGTATGCCCGTCAGCTGGCCGAGCACTACAACCGT
CCTGCGCGCCAACCCCGTTGGGACAACGAGTACCCACAGCAGCGGCCACG
AAGAGGAAGCGATGGATCGGAGGAAAAAGAATACAGCTTTTTCGATGATG
ATCTCCCTGTGATCCGTGAGAACCTTCGCAAAGGATTCTTGGATACCCAG
ACGAAGGTCAACTCGTGGGTCCAGAATCTGAAGAAACGCCTCGATGGCGA
AACACCTGAGGCCGGACCTTCTGGTCAAGGCCAGCCCGATGAGAACTATG
GTAGACCTAGACGGAGCGGGGACCTAGGTCGTCGGAGCGGCGATCGCGAA
CGCTACGATGCCGATCATCGCATCCTGAACGACGACTTTTCCTCACTTGA
ACTGAGAGATGCGGAAGCTCCTCCTCCGCGCCCCCCGCGCCCTCTCGCCA
ATCCCGATCTTTTCAAAACCTCTTCATCTTCCCCTGATCGACGCAAGGTC
CTCTTCCAGGAGGGACCACCTACCGAGATTGACAACCTCTACGATGCCTC
TGAGCCCGTCAGACGTACGTCTCCCGCGACAGGCAAGTCGAGCAAGTGGC
AACCTCTGTCGACTGTTGACCCTTCGCCGGTCGGGGAACATGACCCGTTC
AGTCTTGGGGACAGTGACGATGAGAAAGAAAAGGAAGCCAAGACTAAGGA
GCAGAGCACAGCTGAGGCTGGGCCGGCCAGCGAAGCGTCGAAAGACAGCA
GCAAGGCCGAGAATGCTGGCAAGTCGTAGATGTCGGAAGAAGACAAGACT
ACCCCCAATAAACTCTCCACTGGACCACTCAGTCCCAAACCCGAGTCGCC
GACTACCGCGCGCCCTCTAGATTTTGATGATGAACCTCAGGAAACCGGTG
TCACTGCAGCACCGTCAACAGCCCCTGCTCAGCAGGGCGCTGCGGAAGCT
GCCCCGCCTAAGCCACCCCGCCCATTGAGCCCCCGGCAAGAGGCCGAGAA
TACCCTCAAGGAAGCATTCCCCTCTATCGAGGCATCGGTGATCAAAGCAG
TGTTGGTGGCCAGTAACTGGGATGTGGAACGGTCATTCCATGCTTTGCTT
AGCATGACGGATCCCAGTGCTGTCGAACAAGATGCGCCGCCCCCGAAGCC
ACCACGCCCAACTGCTGCGCAGAGGCAGCTAGAAGCAGATGAGATGTATG
CCCGTCAGCTGGCCGAGCACTACAACCGTCCTGCGCGCCAACCCCGTTGG
GACAACGAGTACCCACAGCAGCGGCCACGAAGAGGAAGCGATGGATCGGA
GGAAAAAGAATACAGCTTTTTCGATGATGATCTCCCTGTGATCCGTGAGA
ACCTTCGCAAAGGATTCTTGGATACCCAGACGAAGGTCAACTCGTGGGTC
CAGAATCTGAAGAAACGCCTCGATGGCGAAACACCTGAGGCCGGACCTTC
TGGTCAAGGCCAGCCCGATGAGAACTATGGTAGACCTAGACGGAGCGGGG
ACCTAGGTCGTCGGAGCGGCGATCGCGAACGCTACGATGCCGATCATCGC
ATCCTGAACGACGACTTTTCCTCACTTGAACTGAGAGATGCGGAAGCTCC
TCCTCCGCGCCCCCCGCGCCCTCTCGCCAATCCCGATCTTTTCAAAACCT
CTTCATCTTCCCCTGATCGACGCAAGGTCCTCTTCCAGGAGGGACCACCT
ACCGAGATTGACAACCTCTACGATGCCTCTGAGCCCGTCAGACGTACGTC
TCCCGCGACAGGCAAGTCGAGCAAGTGGCAACCTCTGTCGACTGTTGACC
CTTCGCCGGTCGGGGAACATGACCCGTTCAGTCTTGGGGACAGTGACGAT
GAGAAAGAAAAGGAAGCCAAGACTAAGGAGCAGAGCACAGCTGAGGCTGG
GCCGGCCAGCGAAGCGTCGAAAGACAGCAGCAAGGCCGAGAATGCTGGCA
AGTCGTAGATGTCGGAAGAAGACAAGACTACCCCCAATAAACTCTCCACT
GGACCACTCAGTCCCAAACCCGAGTCGCCGACTACCGCGCGCCCTCTAGA
TTTTGATGATGAACCTCAGGAAACCGGTGTCACTGCAGCACCGTCAACAG
CCCCTGCTCAGCAGGGCGCTGCGGAAGCTGCCCCGCCTAAGCCACCCCGC
CCATTGAGCCCCCGGCAAGAGGCCGAGAATACCCTCAAGGAAGCATTCCC
CTCTATCGAGGCATCGGTGATCAAAGCAGTGTTGGTGGCCAGTAACTGGG
ATGTGGAACGGTCATTCCATGCTTTGCTTAGCATGACGGATCCCAGTGCT
GTCGAACAAGATGCGCCGCCCCCGAAGCCACCACGCCCAACTGCTGCGCA
GAGGCAGCTAGAAGCAGATGAGATGTATGCCCGTCAGCTGGCCGAGCACT
ACAACCGTCCTGCGCGCCAACCCCGTTGGGACAACGAGTACCCACAGCAG
CGGCCACGAAGAGGAAGCGATGGATCGGAGGAAAAAGAATACAGCTTTTT
CGATGATGATCTCCCTGTGATCCGTGAGAACCTTCGCAAAGGATTCTTGG
ATACCCAGACGAAGGTCAACTCGTGGGTCCAGAATCTGAAGAAACGCCTC
GATGGCGAAACACCTGAGGCCGGACCTTCTGGTCAAGGCCAGCCCGATGA
GAACTATGGTAGACCTAGACGGAGCGGGGACCTAGGTCGTCGGAGCGGCG
ATCGCGAACGCTACGATGCCGATCATCGCATCCTGAACGACGACTTTTCC
TCACTTGAACTGAGAGATGCGGAAGCTCCTCCTCCGCGCCCCCCGCGCCC
TCTCGCCAATCCCGATCTTTTCAAAACCTCTTCATCTTCCCCTGATCGAC
GCAAGGTCCTCTTCCAGGAGGGACCACCTACCGAGATTGACAACCTCTAC
GATGCCTCTGAGCCCGTCAGACGTACGTCTCCCGCGACAGGCAAGTCGAG
CAAGTGGCAACCTCTGTCGACTGTTGACCCTTCGCCGGTCGGGGAACATG
ACCCGTTCAGTCTTGGGGACAGTGACGATGAGAAAGAAAAGGAAGCCAAG
ACTAAGGAGCAGAGCACAGCTGAGGCTGGGCCGGCCAGCGAAGCGTCGAA
AGACAGCAGCAAGGCCGAGAATGCTGGCAAGTCGTAGATGTCGGAAGAAG
ACAAGACTACCCCCAATAAACTCTCCACTGGACCACTCAGTCCCAAACCC
GAGTCGCCGACTACCGCGCGCCCTCTAGATTTTGATGATGAACCTCAGGA
AACCGGTGTCACTGCAGCACCGTCAACAGCCCCTGCTCAGCAGGGCGCTG
CGGAAGCTGCCCCGCCTAAGCCACCCCGCCCATTGAGCCCCCGGCAAGAG
GCCGAGAATACCCTCAAGGAAGCATTCCCCTCTATCGAGGCATCGGTGAT
CAAAGCAGTGTTGGTGGCCAGTAACTGGGATGTGGAACGGTCATTCCATG
CTTTGCTTAGCATGACGGATCCCAGTGCTGTCGAACAAGATGCGCCGCCC
CCGAAGCCACCACGCCCAACTGCTGCGCAGAGGCAGCTAGAAGCAGATGA
GATGTATGCCCGTCAGCTGGCCGAGCACTACAACCGTCCTGCGCGCCAAC
CCCGTTGGGACAACGAGTACCCACAGCAGCGGCCACGAAGAGGAAGCGAT
GGATCGGAGGAAAAAGAATACAGCTTTTTCGATGATGATCTCCCTGTGAT
CCGTGAGAACCTTCGCAAAGGATTCTTGGATACCCAGACGAAGGTCAACT
CGTGGGTCCAGAATCTGAAGAAACGCCTCGATGGCGAAACACCTGAGGCC
GGACCTTCTGGTCAAGGCCAGCCCGATGAGAACTATGGTAGACCTAGACG
GAGCGGGGACCTAGGTCGTCGGAGCGGCGATCGCGAACGCTACGATGCCG
ATCATCGCATCCTGAACGACGACTTTTCCTCACTTGAACTGAGAGATGCG
GAAGCTCCTCCTCCGCGCCCCCCGCGCCCTCTCGCCAATCCCGATCTTTT
CAAAACCTCTTCATCTTCCCCTGATCGACGCAAGGTCCTCTTCCAGGAGG
GACCACCTACCGAGATTGACAACCTCTACGATGCCTCTGAGCCCGTCAGA
CGTACGTCTCCCGCGACAGGCAAGTCGAGCAAGTGGCAACCTCTGTCGAC
TGTTGACCCTTCGCCGGTCGGGGAACATGACCCGTTCAGTCTTGGGGACA
GTGACGATGAGAAAGAAAAGGAAGCCAAGACTAAGGAGCAGAGCACAGCT
GAGGCTGGGCCGGCCAGCGAAGCGTCGAAAGACAGCAGCAAGGCCGAGAA
TGCTGGCAAGTCGTAGATGTCGGAAGAAGACAAGACTACCCCCAATAAAC
TCTCCACTGGACCACTCAGTCCCAAACCCGAGTCGCCGACTACCGCGCGC
CCTCTAGATTTTGATGATGAACCTCAGGAAACCGGTGTCACTGCAGCACC
GTCAACAGCCCCTGCTCAGCAGGGCGCTGCGGAAGCTGCCCCGCCTAAGC
CACCCCGCCCATTGAGCCCCCGGCAAGAGGCCGAGAATACCCTCAAGGAA
GCATTCCCCTCTATCGAGGCATCGGTGATCAAAGCAGTGTTGGTGGCCAG
TAACTGGGATGTGGAACGGTCATTCCATGCTTTGCTTAGCATGACGGATC
CCAGTGCTGTCGAACAAGATGCGCCGCCCCCGAAGCCACCACGCCCAACT
GCTGCGCAGAGGCAGCTAGAAGCAGATGAGATGTATGCCCGTCAGCTGGC
CGAGCACTACAACCGTCCTGCGCGCCAACCCCGTTGGGACAACGAGTACC
CACAGCAGCGGCCACGAAGAGGAAGCGATGGATCGGAGGAAAAAGAATAC
AGCTTTTTCGATGATGATCTCCCTGTGATCCGTGAGAACCTTCGCAAAGG
ATTCTTGGATACCCAGACGAAGGTCAACTCGTGGGTCCAGAATCTGAAGA
AACGCCTCGATGGCGAAACACCTGAGGCCGGACCTTCTGGTCAAGGCCAG
CCCGATGAGAACTATGGTAGACCTAGACGGAGCGGGGACCTAGGTCGTCG
GAGCGGCGATCGCGAACGCTACGATGCCGATCATCGCATCCTGAACGACG
ACTTTTCCTCACTTGAACTGAGAGATGCGGAAGCTCCTCCTCCGCGCCCC
CCGCGCCCTCTCGCCAATCCCGATCTTTTCAAAACCTCTTCATCTTCCCC
TGATCGACGCAAGGTCCTCTTCCAGGAGGGACCACCTACCGAGATTGACA
ACCTCTACGATGCCTCTGAGCCCGTCAGACGTACGTCTCCCGCGACAGGC
AAGTCGAGCAAGTGGCAACCTCTGTCGACTGTTGACCCTTCGCCGGTCGG
GGAACATGACCCGTTCAGTCTTGGGGACAGTGACGATGAGAAAGAAAAGG
AAGCCAAGACTAAGGAGCAGAGCACAGCTGAGGCTGGGCCGGCCAGCGAA
GCGTCGAAAGACAGCAGCAAGGCCGAGAATGCTGGCAAGTCGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011848-T1.utr5p1 | KJC3_011848-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011848-T1.utr3p1 | KJC3_011848-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009060 |
| DBxref | InterPro:IPR041807 |
| DBxref | InterPro:IPR003892 |
| DBxref | PFAM:PF02845 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:1840665..1842831 + |
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