You are here

Home

KJC3_011859-T1, KJC3_011859-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011859-T1
Unique NameKJC3_011859-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:1867462..1868647-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011859-T1 ID=KJC3_011859-T1|Name=KJC3_011859-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1186bp|location=Sequence derived from alignment at ch8:1867462..1868647- (Aspergillus niger KJC3)
ATGTCTTCCGTCACGAGTTCCCACCGCCTTTCCGCGCGGAAGTCCGGCCA
TCGTTCCGCCGCAACTCCTGCTTCAATTCCCAACACACCTTCTGTCCGTC
CAGCCTCGCAACCTCTCCGTCGCTCTCTGCCATCGCAGCAGACTTCTAGG
GCTTCACCAGCCTCTTCCCGTCAGCCCAGTACTGGCCATGTGTCGAGTCA
GCTCGCTTCTGCTTGGCCGTTCAATCCCCAGGAAACAGAACTAATCCGCG
CCGGATACCGTCCCGCCTTCAAACCGAAACCCGTCGCCGCAGCGGACGAA
CAGTCCTCGACCAACAATAACAGCAATAGGAAAGGGCCCAATAAGAAGAA
GAATATGGCGGAACCACGAGCCCGTGCCGCTAGGCACAAGGGTCAGATGA
ACTTTGCATCTGAACGTACGTCTGTCGCCGTCGATTCTAGATCGATAGCT
AGATCTATAGTTCTGGTTGCTAACATGAACACACATATCAGTCCGCCTCC
TCCTTCTTGCCTATGGTGACCCCCGTCCGCACCCTTCGTTTCCCGCCGAG
CCACTCCCCGAAACCATCCGTGTTCTGGACGAGATTGTCACCGACTTCGT
TCTCGAAATGTGTCACGGTGCGGCCCAGTACGCCAGCTACTCCCGCCGGC
AGAAGATCAAGGTCGATGACTTCCGGTTTGCGCTGCGCCGGGATCCCAAC
AAGCTTGGTCGTGTGCAGGAACTTCTTCGCATGGAGCGTGAGCTGAAAGA
GGCCCGTAAGGCATTTGATCAGAATGACGATCAGGTCGGGAACTTGAAGG
ATGCGGGCAAGAAGGGCCTTGAGGAACTTGGCGAAAGTGTTGATGGGAAG
AAGAGTAAGGGCAAGGGGAAGAGAAATGCAAGAAGGGATTCGGATGCCAC
GGAGGATACGGCGCCGAAGAAGAGAAAAGTTGTGGGATAAGCTGAGATTT
GATCTTTCCCGATACCTTTCTCTGGCTGCTGATTTGTTTTTCTTTTTTCC
TCCTCTACTTTTCTGGCGTTCGGGACTACAGGGATAGGGTCTGTTCCACC
TGCTTCTTAAACAAATATGATATCCACTATCTGGTCGGCATTGGGGGGGC
GTTTGTTATGTATCAAGATCGAAACTCTTACTTAGCTTAAATCAACTAGC
TCCCTAGACAAATGAAACTTATCAGGAGATCCGTCA
back to top

Coding sequence (CDS) from alignment at ch8:1867462..1868647-

>KJC3_011859-T1 ID=KJC3_011859-T1|Name=KJC3_011859-T1|organism=Aspergillus niger KJC3|type=CDS|length=1728bp|location=Sequence derived from alignment at ch8:1867462..1868647- (Aspergillus niger KJC3)
TCCGCCTCCTCCTTCTTGCCTATGGTGACCCCCGTCCGCACCCTTCGTTT
CCCGCCGAGCCACTCCCCGAAACCATCCGTGTTCTGGACGAGATTGTCAC
CGACTTCGTTCTCGAAATGTGTCACGGTGCGGCCCAGTACGCCAGCTACT
CCCGCCGGCAGAAGATCAAGGTCGATGACTTCCGGTTTGCGCTGCGCCGG
GATCCCAACAAGCTTGGTCGTGTGCAGGAACTTCTTCGCATGGAGCGTGA
GCTGAAAGAGGCCCGTAAGGCATTTGATCAGAATGACGATCAGGTCGGGA
ACTTGAAGGATGCGGGCAAGAAGGGCCTTGAGGAACTTGGCGAAAGTGTT
GATGGGAAGAAGAGTAAGGGCAAGGGGAAGAGAAATGCAAGAAGGGATTC
GGATGCCACGGAGGATACGGCGCCGAAGAAGAGAAAAGTTGTGGGATAAA
TGTCTTCCGTCACGAGTTCCCACCGCCTTTCCGCGCGGAAGTCCGGCCAT
CGTTCCGCCGCAACTCCTGCTTCAATTCCCAACACACCTTCTGTCCGTCC
AGCCTCGCAACCTCTCCGTCGCTCTCTGCCATCGCAGCAGACTTCTAGGG
CTTCACCAGCCTCTTCCCGTCAGCCCAGTACTGGCCATGTGTCGAGTCAG
CTCGCTTCTGCTTGGCCGTTCAATCCCCAGGAAACAGAACTAATCCGCGC
CGGATACCGTCCCGCCTTCAAACCGAAACCCGTCGCCGCAGCGGACGAAC
AGTCCTCGACCAACAATAACAGCAATAGGAAAGGGCCCAATAAGAAGAAG
AATATGGCGGAACCACGAGCCCGTGCCGCTAGGCACAAGGGTCAGATGAA
CTTTGCATCTGAACTCCGCCTCCTCCTTCTTGCCTATGGTGACCCCCGTC
CGCACCCTTCGTTTCCCGCCGAGCCACTCCCCGAAACCATCCGTGTTCTG
GACGAGATTGTCACCGACTTCGTTCTCGAAATGTGTCACGGTGCGGCCCA
GTACGCCAGCTACTCCCGCCGGCAGAAGATCAAGGTCGATGACTTCCGGT
TTGCGCTGCGCCGGGATCCCAACAAGCTTGGTCGTGTGCAGGAACTTCTT
CGCATGGAGCGTGAGCTGAAAGAGGCCCGTAAGGCATTTGATCAGAATGA
CGATCAGGTCGGGAACTTGAAGGATGCGGGCAAGAAGGGCCTTGAGGAAC
TTGGCGAAAGTGTTGATGGGAAGAAGAGTAAGGGCAAGGGGAAGAGAAAT
GCAAGAAGGGATTCGGATGCCACGGAGGATACGGCGCCGAAGAAGAGAAA
AGTTGTGGGATAAATGTCTTCCGTCACGAGTTCCCACCGCCTTTCCGCGC
GGAAGTCCGGCCATCGTTCCGCCGCAACTCCTGCTTCAATTCCCAACACA
CCTTCTGTCCGTCCAGCCTCGCAACCTCTCCGTCGCTCTCTGCCATCGCA
GCAGACTTCTAGGGCTTCACCAGCCTCTTCCCGTCAGCCCAGTACTGGCC
ATGTGTCGAGTCAGCTCGCTTCTGCTTGGCCGTTCAATCCCCAGGAAACA
GAACTAATCCGCGCCGGATACCGTCCCGCCTTCAAACCGAAACCCGTCGC
CGCAGCGGACGAACAGTCCTCGACCAACAATAACAGCAATAGGAAAGGGC
CCAATAAGAAGAAGAATATGGCGGAACCACGAGCCCGTGCCGCTAGGCAC
AAGGGTCAGATGAACTTTGCATCTGAAC
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0006366transcription by RNA polymerase II
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_011859KJC3_011859Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011859-T1KJC3_011859-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011859-T1.cdsKJC3_011859-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011859-T1.utr3p1KJC3_011859-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011859-T1.exon2KJC3_011859-T1.exon2Aspergillus niger KJC3exon
KJC3_011859-T1.exon1KJC3_011859-T1.exon1Aspergillus niger KJC3exon


Properties
Property NameValue
DBxrefInterPro:IPR009072
DBxrefInterPro:IPR003195
DBxrefPFAM:PF02269
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:1867462..1868647 -
Powered by Drupal