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KJC3_011867-T1, KJC3_011867-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_011867-T1
Unique NameKJC3_011867-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:1881884..1883051+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_011867-T1 ID=KJC3_011867-T1|Name=KJC3_011867-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1168bp|location=Sequence derived from alignment at ch8:1881884..1883051+ (Aspergillus niger KJC3)
CCGGCCGTGAAAGCGAACCCCCCCTTCGACTTTCGACAACCATCCGCCCA
TCCAGCCAATTTTATCCATCAGTTCGGTACGTATAGAGACCCCCTATTGT
GAATTTATATCACCAGTCGATCTTCCCTGGTTGCGAAAAGAAAAGAAAAA
GACACGAGAAATTTCCCTACGCACAAAGTCCGCCTATATAACCCCGAATC
TTGAAATCCGCATCATGTCCGCCACCAGAACCCTGCAACTTCAGCTTCTT
CCGAACACCACCCATATATTGGAAAATACATAATTCTAACGGAAATTCTT
GCTCTACAGTTCACCCTCCTTCGAACATAATCCGACAAGATGGGTAAGGG
ACAGCCCCGTGGTTTGAACGCCGCCCGCAAGCTCGCGACCACCCGTCGCG
AGAACCGCTGGGCCGATCTGCACTACAAGAAGCGCCTCCTCGGTACTGCC
TACAAGTCCTCTCCCTTCGGAGGTGCCTCCCACGCCAAGGGTATCGTTCT
TGAGAAGGTCGGTGTTGAGGCCAAGCAGCCCAACTCCGCTATTCGCAAGT
GTGTCAAGGTCCAGCTCATCAAGAACGGCAAGAAGGTTACCGCTTTCGGT
GGGTGATCCTATCCTTTTCTTTTTCTATTTCCCGGTTGTGATGGATGTTT
ATGGTTTGGGGATTTTGTGATGGGATATTGTGCGGAGAATGGAGCAGAAG
AAGGAGAAGGGAATAAAGGACGGAGTGGCAAACGGGAAATATCGCATATT
CTTTAAGAGGGTATCGATTGGCTAACATATTTCCTGTATAGTCCCCAACG
ATGGTTGCTTGAACTTCATCGATGAGAACGACGAGGTCCTCCTCGCCGGT
TTCGGTCGTAAGGGCAAGGCCAAGGGTGATATTCCCGGTGTCCGTTTCAA
GGTCGTCAAGGTTTCCGGTGTCGGTCTGCTCGCTCTCTGGAAGGAGAAGA
AGGAGAAGCCCCGCTCTTAAATAACCCAAACCCTGGGGAATTTAATAAAG
ATGCTATTAGCGGGGTGGAAGGGGGCCCATTCCATGGAAGAAGCTTCGGG
GCAAAGGCAAAGCAAACACAAGTCTATGGTCTGGAATTGATGGTTCAGGA
CGGATGAGACCCTGCAAAATAAATACCATTTGCAGCGTACTACGATTGAT
ATATCCATAAAAGATGGC
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Coding sequence (CDS) from alignment at ch8:1881884..1883051+

>KJC3_011867-T1 ID=KJC3_011867-T1|Name=KJC3_011867-T1|organism=Aspergillus niger KJC3|type=CDS|length=876bp|location=Sequence derived from alignment at ch8:1881884..1883051+ (Aspergillus niger KJC3)
ATGGGTAAGGGACAGCCCCGTGGTTTGAACGCCGCCCGCAAGCTCGCGAC
CACCCGTCGCGAGAACCGCTGGGCCGATCTGCACTACAAGAAGCGCCTCC
TCGGTACTGCCTACAAGTCCTCTCCCTTCGGAGGTGCCTCCCACGCCAAG
GGTATCGTTCTTGAGAAGGTCGGTGTTGAGGCCAAGCAGCCCAACTCCGC
TATTCGCAAGTGTGTCAAGGTCCAGCTCATCAAGAACGGCAAGAAGGTTA
CCGCTTTCGTCCCCAACGATGGTTGCTTGAACTTCATCGATGAGAACGAC
GAGGTCCTCCTCGCCGGTTTCGGTCGTAAGGGCAAGGCCAAGGGTGATAT
TCCCGGTGTCCGTTTCAAGGTCGTCAAGGTTTCCGGTGTCGGTCTGCTCG
CTCTCTGGAAGGAGAAGAAGGAGAAGCCCCGCTCTTAAATGGGTAAGGGA
CAGCCCCGTGGTTTGAACGCCGCCCGCAAGCTCGCGACCACCCGTCGCGA
GAACCGCTGGGCCGATCTGCACTACAAGAAGCGCCTCCTCGGTACTGCCT
ACAAGTCCTCTCCCTTCGGAGGTGCCTCCCACGCCAAGGGTATCGTTCTT
GAGAAGGTCGGTGTTGAGGCCAAGCAGCCCAACTCCGCTATTCGCAAGTG
TGTCAAGGTCCAGCTCATCAAGAACGGCAAGAAGGTTACCGCTTTCGTCC
CCAACGATGGTTGCTTGAACTTCATCGATGAGAACGACGAGGTCCTCCTC
GCCGGTTTCGGTCGTAAGGGCAAGGCCAAGGGTGATATTCCCGGTGTCCG
TTTCAAGGTCGTCAAGGTTTCCGGTGTCGGTCTGCTCGCTCTCTGGAAGG
AGAAGAAGGAGAAGCCCCGCTCTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS23KJC3_011867Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011867-T1KJC3_011867-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011867-T1.utr5p1KJC3_011867-T1.utr5p1Aspergillus niger KJC3five_prime_UTR
KJC3_011867-T1.utr5p2KJC3_011867-T1.utr5p2Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011867-T1.exon1KJC3_011867-T1.exon1Aspergillus niger KJC3exon
KJC3_011867-T1.exon2KJC3_011867-T1.exon2Aspergillus niger KJC3exon
KJC3_011867-T1.exon3KJC3_011867-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011867-T1.cdsKJC3_011867-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_011867-T1.utr3p1KJC3_011867-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR005680
DBxrefInterPro:IPR006032
DBxrefPFAM:PF00164
Product40S ribosomal protein S23
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:1881884..1883051 +
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