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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:1928964..1931088- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_011887-T1 ID=KJC3_011887-T1|Name=KJC3_011887-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2125bp|location=Sequence derived from alignment at ch8:1928964..1931088- (Aspergillus niger KJC3)
CTTATAATTCAATTCCACATTTCCTCCTTCTGGTTGGCTGCCAAGGCGTC
TAACTTTTTTCAACCTTAAAGCCCAATTTAATTCCCACGGCGGATCAGAT
CAGTCGGTAATATTCAGTCATCCATCCTGTGTACGGTGTATACGTTGCCC
TCGCCATCCACTTTGCTTGCCCTTTCCCTACTATCCTTTTCCTCCCATTC
CCGCCATCTCTTCCTGTTCCTCGCTCCCCTTTTTTTCTTTCTTCCCACTT
TACGGTTCTCTTCTCCTGGATGTATCCCCGACTTCCTCTCCTGATCCCGT
CAACCTAATCCCGTGGTTGCCGGTGTTTCCCTCCCCACTGGTCCCTTTCT
CTCTTTCCCCCATCAGAATCCTGGCACGTGGTTCACGGGGGACGTAAACG
TCATCCAGTCGATGTCTTCCCAGATCTCTTCTATACTATTAGAACTTAAC
TAGGCGCCCTGCTCTTGTCCTGAGCTGGGTCTTTTCTCCATCCTTCGCTA
CCCATTCTCTCCTCTACCCTCTTCGTCTATTCTCCGAATCTATTATCCGC
AGATTCCGGGCTTGTCCTCTCCACCACCACGTGCTTGACAGCGGTCCATG
GCAAAGCTGCCCCTGTTCAGGAAAGCTCCTGCACGTCCGCAGGCCGGCCG
GAGCAGGTCGAAGGTGCTCTGGCATCGCATCCTTCGTTCCTTCTGCTATC
TAATCGCTTGGATATTCCTGATCTTGGTCTGCATTGGCAATGTCGCCAAC
AAGCCCGTTCTCCGCCAGACCTACTTCCTCGAGATCAACCTTGCGAATAT
CATCCCACTGTCCACCCCCAATGCGGTCCTGATCGATACCATTGCTCGCA
CCATCGGTCTACACGACTTTTACCAGGTGGGACTATGGAATTTCTGCGAG
GGTTATTTGGACCAGGGCATCACCCATTGCTCCTCGCCCAAACCCCTCTA
CTGGTTCAATCCCGTCGAGATCATTCTCAGTGAACTGCTATCCGGCGCTA
CGAGTACGATCCTCCTTCTACCGTGAAAACGAACCCATCACTAACAAACC
TGCAGTTGCTCTTCCTGCCGACATCACGTCAGCTCTGCACATCGCTCGCA
TAGCTTCTCACTGGATGTTTGGTCTCTTCATCACCGCCACCGTCCTAACC
TTCATTCTCATCTTTCTATCCCCACTCGCTGTCTCTTCACGGCCTCCTCA
GGCCCTTTCCTCCGACCCAGTCGTCAATCAAACCCACCCACAACATCGCC
GTCGTACTTTTGTGCTTCTCCGTTCTCTTCCATTCCTCATCCTAACCTTC
CTGACCGCTCTCTTCACCGTTGTCGCCTCCGTCGTCGCAACAGTCATGTT
CATCATCTTCCGCAACGTCTTCATCTCCGCCAGCGAAGACCTCAACATTG
ACGCCTGGATCGGCACTCGCATGATGGTGTTCATGTGGATTGCCTCCGCC
TTTAACCTGATTGCCTTTATCCTCCAACTCGGCTCCTGCTGTGCCTCCTG
CTGTGGTGGCCGCAAAGCCCGCAAGCAGCTCAAGCGGAATAGTGCCGGTA
CTACGAGCCCTAGCAGCACTGCTTCCCCTGATGTGCGTGAGAAAGAGCAT
CCACACAGTCCCGCGACTACGGAGTGAGCTGTTCTCTTCCTTTTCCAGAC
CACATATGCTCTCTCACATTGTGATCTCCTCCCTCCTCTTATATCAATAC
CCCGCGGTTCATAAATCGAATGAGGAAAATCGCCTGTACGACGATGATAA
ATAGAACATACAAGGTGTGAGCATTGCAGGGGCCCGCCAATATATACTGA
TCTGGATATGTATACTGTACGTCTTTCTTGTTTGGCCATTCTGGTTCGGG
TTATGCTGTATAGAACGCGATGGATATAGACTGGGGCATATTCAACTTAG
ACGGGATTCGGTTTTGGGTCTGAGTTGAGCTTGTGGCTGCCTTGCTTCCA
CTGATACATTGGGAGGGCGCTCTACACATGCCGCCCAGCTTGCATAGGTT
ACGATCTTTACGACTCTATTATGATATTACGAGCGTGCGTATTTCAAGAA
GTTCATTCCAAAGAAGAGGAGGTTATATCCCAGATGAGAATTGTGTTTCA
TGTTCAACGAGATACTAAGTGAGAC back to topCoding sequence (CDS) from alignment at ch8:1928964..1931088- >KJC3_011887-T1 ID=KJC3_011887-T1|Name=KJC3_011887-T1|organism=Aspergillus niger KJC3|type=CDS|length=1956bp|location=Sequence derived from alignment at ch8:1928964..1931088- (Aspergillus niger KJC3)
TTGCTCTTCCTGCCGACATCACGTCAGCTCTGCACATCGCTCGCATAGCT
TCTCACTGGATGTTTGGTCTCTTCATCACCGCCACCGTCCTAACCTTCAT
TCTCATCTTTCTATCCCCACTCGCTGTCTCTTCACGGCCTCCTCAGGCCC
TTTCCTCCGACCCAGTCGTCAATCAAACCCACCCACAACATCGCCGTCGT
ACTTTTGTGCTTCTCCGTTCTCTTCCATTCCTCATCCTAACCTTCCTGAC
CGCTCTCTTCACCGTTGTCGCCTCCGTCGTCGCAACAGTCATGTTCATCA
TCTTCCGCAACGTCTTCATCTCCGCCAGCGAAGACCTCAACATTGACGCC
TGGATCGGCACTCGCATGATGGTGTTCATGTGGATTGCCTCCGCCTTTAA
CCTGATTGCCTTTATCCTCCAACTCGGCTCCTGCTGTGCCTCCTGCTGTG
GTGGCCGCAAAGCCCGCAAGCAGCTCAAGCGGAATAGTGCCGGTACTACG
AGCCCTAGCAGCACTGCTTCCCCTGATGTGCGTGAGAAAGAGCATCCACA
CAGTCCCGCGACTACGGAGTGAATGGCAAAGCTGCCCCTGTTCAGGAAAG
CTCCTGCACGTCCGCAGGCCGGCCGGAGCAGGTCGAAGGTGCTCTGGCAT
CGCATCCTTCGTTCCTTCTGCTATCTAATCGCTTGGATATTCCTGATCTT
GGTCTGCATTGGCAATGTCGCCAACAAGCCCGTTCTCCGCCAGACCTACT
TCCTCGAGATCAACCTTGCGAATATCATCCCACTGTCCACCCCCAATGCG
GTCCTGATCGATACCATTGCTCGCACCATCGGTCTACACGACTTTTACCA
GGTGGGACTATGGAATTTCTGCGAGGGTTATTTGGACCAGGGCATCACCC
ATTGCTCCTCGCCCAAACCCCTCTACTGGTTCAATCCCGTCGAGATCATT
CTCAGTGAACTGCTATCCGGCGCTACGATTGCTCTTCCTGCCGACATCAC
GTCAGCTCTGCACATCGCTCGCATAGCTTCTCACTGGATGTTTGGTCTCT
TCATCACCGCCACCGTCCTAACCTTCATTCTCATCTTTCTATCCCCACTC
GCTGTCTCTTCACGGCCTCCTCAGGCCCTTTCCTCCGACCCAGTCGTCAA
TCAAACCCACCCACAACATCGCCGTCGTACTTTTGTGCTTCTCCGTTCTC
TTCCATTCCTCATCCTAACCTTCCTGACCGCTCTCTTCACCGTTGTCGCC
TCCGTCGTCGCAACAGTCATGTTCATCATCTTCCGCAACGTCTTCATCTC
CGCCAGCGAAGACCTCAACATTGACGCCTGGATCGGCACTCGCATGATGG
TGTTCATGTGGATTGCCTCCGCCTTTAACCTGATTGCCTTTATCCTCCAA
CTCGGCTCCTGCTGTGCCTCCTGCTGTGGTGGCCGCAAAGCCCGCAAGCA
GCTCAAGCGGAATAGTGCCGGTACTACGAGCCCTAGCAGCACTGCTTCCC
CTGATGTGCGTGAGAAAGAGCATCCACACAGTCCCGCGACTACGGAGTGA
ATGGCAAAGCTGCCCCTGTTCAGGAAAGCTCCTGCACGTCCGCAGGCCGG
CCGGAGCAGGTCGAAGGTGCTCTGGCATCGCATCCTTCGTTCCTTCTGCT
ATCTAATCGCTTGGATATTCCTGATCTTGGTCTGCATTGGCAATGTCGCC
AACAAGCCCGTTCTCCGCCAGACCTACTTCCTCGAGATCAACCTTGCGAA
TATCATCCCACTGTCCACCCCCAATGCGGTCCTGATCGATACCATTGCTC
GCACCATCGGTCTACACGACTTTTACCAGGTGGGACTATGGAATTTCTGC
GAGGGTTATTTGGACCAGGGCATCACCCATTGCTCCTCGCCCAAACCCCT
CTACTGGTTCAATCCCGTCGAGATCATTCTCAGTGAACTGCTATCCGGCG
CTACGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005886 | plasma membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011887-T1.utr3p1 | KJC3_011887-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_011887-T1.utr5p1 | KJC3_011887-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009571 |
| DBxref | PFAM:PF06687 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:1928964..1931088 - |
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