KJC3_011965-T1, KJC3_011965-T1 (mRNA) Aspergillus niger KJC3

Overview


Name	KJC3_011965-T1
Unique Name	KJC3_011965-T1
Type	mRNA
Organism	Aspergillus niger KJC3

Sequences

The following sequences are available for this feature:

mRNA from alignment at ch8:2132912..2135417+
coding sequence from alignment at ch8:2132912..2135417+

mRNA from alignment at ch8:2132912..2135417+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>KJC3_011965-T1 ID=KJC3_011965-T1|Name=KJC3_011965-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2506bp|location=Sequence derived from alignment at ch8:2132912..2135417+ (Aspergillus niger KJC3)
GCATCAACCTCGACTACCGCCCGGTAGCCAGCACAACGCCATTGGTTCGG
GGTCTTTGGACGTGTTATCAATCGAGCCATATCTAGTTCAGCCCCGCGCG
CACGCCAGCACTCTTGGAGACCTTGTCCAGTTTGATCTATACCTCACTTA
CCCATCGGTCATCGTCGCATAAACTACACCACGATGGAGTCGTCACGCGG
CCCTCCCAGGGTCAAGAACAAGGCTGCGGCGCCAGTCCAGATCTCGGCGG
AGCAGCTGCTTCGCGAGGCCGTGGACCGGCAGGAGCCCGCATTGCAGGCG
CCGACGCAGCGCTTTGCCGACCTGGAAGAACTGCACGAATACCAGGGCCG
CAAGCGAAAAGAGTTCGAAGACTATGTGCGTCGGAACCGAATTAACATGA
ACAACTGGATGCGCTATGCGGCATGGGAGCTGGAGCAAAAGGAGTTCCGC
CGGGCGCGTTCAATCTTTGAACGGGCGCTGGACGTCAGCCCGACCTCGGT
GGTTCTGTGGATTCGGTACATCGAGTCGGAGATGCGGAATCGCAACATCA
ATCATGCCAGGAACTTGCTCGACCGTGCGGTGACGATCTTGCCTCGGGTG
GATAAGCTGTGGTACAAGTATGTCTACATGGAGGAGACACTGGGCAACAT
TGCGGGTACACGACAGGTCTTTGAGCGGTGGATGTCTTGGGAGCCGGAAG
AGGGAGCTTGGAGCGCCTATATCAAGCTGGAAAAGCGGTACAATGAGTTC
GAGAGGGCGCGCGCGATCTTCCAGCGGTTCACCATTGTTCACCCTGAACC
ACGCAATTGGATCAAGTGGGCTCGGTTTGAAGAGGAGTATGGAACGAGCG
ATCTCGTGCGGGAGGTGTATGGAATGGCGATTGAGACTCTGGGAGAGGAT
TTCATGGACGAGAAGCTCTTCATCGGCTATGCCAAGTTCGAGGCGAAGTT
GAAGGAGTACGAACGTGCCCGGGCGATTTACAAGTATGCCTTAGACCGAC
TTCCTCGCTCAAAGTCCACGGCCCTTCACAAGTCCTATACAACATTCGAG
AAACAATATGGTGACCGGGAAGGCGTTGAGGATGTTATTCTCTCAAAACG
CAGAGTCCAGTACGAGGAGCAACTGAAAGAGAACTCGCGGAACTACGACA
TATGGTTCGACTTTGCCCGGCTCGAGGAAACCTCGGGTGACCCCGACCGA
GTACGCGACATCTACGAACGCGCAATCGCTCAGATACCACCATCGCAGGA
GAAGCGGCACTGGAGACGGTATATCTACCTGTGGGTATTCTACGCCATTT
GGGAGGAAATGGAAGCCAAGGACGCCGAGCGTGCGCGCCAAATCTACAAC
GAGTGTCTCAAGTTGATTCCCCACAAAAAGTTCACCTTTGCCAAGATCTG
GCTCCTGAAGGCGCAGTTTGAGATCCGTCAGATGAATCTCCAAGCCGCTC
GTAAGACGCTTGGCCAGGCCATCGGCATGTGCCCGAAGGATAAACTCTTC
CGGGGATACATTGATCTAGAGCGCCAGCTGTTCGAGTTCGTGCGGTGCCG
GACACTGTTCGAAAAGCAGATCGAGTGGAATCCTTCCAACAGCCAGTCAT
GGATCAAGTATGCCGAATTGGAGCGCGGGCTGGACGACACCGACCGTGCA
CGAGCCATCTACGAGCTTGGAATTGACCAGCCGACACTCGATATGCCCGA
GTTGGTGTGGAAGTCGTACATTGACTTTGAGGAGTACGAAGGCGAATACG
ACCGGGTCCGCCAGCTCTACGAGCGTCTGCTGGAGAAGACAGATCACGTC
AAGGTGTGGATTAACTACGCCCGCTTCGAGATCAACGTCCCCGACGAGGA
AGAAGAGGAAGAGGAGGAGGAAGAGGAGCGGCCGATCAGCGAGGATGCCA
AGCGTCGTGCTCGGGCCGTTTTCGAACGAGCTCACAAGGTGTTCAAGGAG
AAGGAGCTCAAGGAAGAGGTAAGCTGTACTCGACATTCCTTTTCTAACAT
ATCCCTGACTAACCATGACACAGCGCGTGGAATTGCTCAATGCTTGGCGG
TCATTCGAGCACACGCACGGTTCACCAGAAGACATCGACAAGATCGAGAA
ACAGATGCCCCGGCGAGTCAAGAAGCGGCGCAAGTTGGACGACGATCGGT
ACGAGGAGTACATGGATTACGTATTCCCAGCAGACGACCAGTCGGCGGCG
AATCTGTCGAAGCTGCTGCAAAGAGCTCACCAATGGAAGCAGCAACAGCA
ACAACAGGGGGATGGAGCATAGATGGATGTACCAGGGTAATTCTATACAT
AGCTGGGAAAATAATGGCATCACGAGATGTATCATGTCAGTGGTACTTGC
TCTTGCATCTGGTTACACGTGCGATTACCAATTTTGTGTAGCACCAATCC
ATCTTCTGGCACTCCGTGGACTCTCTTCCTTTTACGAGTGACTCCATGTA
CTCCATAAGTAGTCAGTCAGATAACTGCACGTGATCTAGATGCACGTGTG
TTGGAC

Coding sequence (CDS) from alignment at ch8:2132912..2135417+

>KJC3_011965-T1 ID=KJC3_011965-T1|Name=KJC3_011965-T1|organism=Aspergillus niger KJC3|type=CDS|length=4068bp|location=Sequence derived from alignment at ch8:2132912..2135417+ (Aspergillus niger KJC3)
ATGGAGTCGTCACGCGGCCCTCCCAGGGTCAAGAACAAGGCTGCGGCGCC
AGTCCAGATCTCGGCGGAGCAGCTGCTTCGCGAGGCCGTGGACCGGCAGG
AGCCCGCATTGCAGGCGCCGACGCAGCGCTTTGCCGACCTGGAAGAACTG
CACGAATACCAGGGCCGCAAGCGAAAAGAGTTCGAAGACTATGTGCGTCG
GAACCGAATTAACATGAACAACTGGATGCGCTATGCGGCATGGGAGCTGG
AGCAAAAGGAGTTCCGCCGGGCGCGTTCAATCTTTGAACGGGCGCTGGAC
GTCAGCCCGACCTCGGTGGTTCTGTGGATTCGGTACATCGAGTCGGAGAT
GCGGAATCGCAACATCAATCATGCCAGGAACTTGCTCGACCGTGCGGTGA
CGATCTTGCCTCGGGTGGATAAGCTGTGGTACAAGTATGTCTACATGGAG
GAGACACTGGGCAACATTGCGGGTACACGACAGGTCTTTGAGCGGTGGAT
GTCTTGGGAGCCGGAAGAGGGAGCTTGGAGCGCCTATATCAAGCTGGAAA
AGCGGTACAATGAGTTCGAGAGGGCGCGCGCGATCTTCCAGCGGTTCACC
ATTGTTCACCCTGAACCACGCAATTGGATCAAGTGGGCTCGGTTTGAAGA
GGAGTATGGAACGAGCGATCTCGTGCGGGAGGTGTATGGAATGGCGATTG
AGACTCTGGGAGAGGATTTCATGGACGAGAAGCTCTTCATCGGCTATGCC
AAGTTCGAGGCGAAGTTGAAGGAGTACGAACGTGCCCGGGCGATTTACAA
GTATGCCTTAGACCGACTTCCTCGCTCAAAGTCCACGGCCCTTCACAAGT
CCTATACAACATTCGAGAAACAATATGGTGACCGGGAAGGCGTTGAGGAT
GTTATTCTCTCAAAACGCAGAGTCCAGTACGAGGAGCAACTGAAAGAGAA
CTCGCGGAACTACGACATATGGTTCGACTTTGCCCGGCTCGAGGAAACCT
CGGGTGACCCCGACCGAGTACGCGACATCTACGAACGCGCAATCGCTCAG
ATACCACCATCGCAGGAGAAGCGGCACTGGAGACGGTATATCTACCTGTG
GGTATTCTACGCCATTTGGGAGGAAATGGAAGCCAAGGACGCCGAGCGTG
CGCGCCAAATCTACAACGAGTGTCTCAAGTTGATTCCCCACAAAAAGTTC
ACCTTTGCCAAGATCTGGCTCCTGAAGGCGCAGTTTGAGATCCGTCAGAT
GAATCTCCAAGCCGCTCGTAAGACGCTTGGCCAGGCCATCGGCATGTGCC
CGAAGGATAAACTCTTCCGGGGATACATTGATCTAGAGCGCCAGCTGTTC
GAGTTCGTGCGGTGCCGGACACTGTTCGAAAAGCAGATCGAGTGGAATCC
TTCCAACAGCCAGTCATGGATCAAGTATGCCGAATTGGAGCGCGGGCTGG
ACGACACCGACCGTGCACGAGCCATCTACGAGCTTGGAATTGACCAGCCG
ACACTCGATATGCCCGAGTTGGTGTGGAAGTCGTACATTGACTTTGAGGA
GTACGAAGGCGAATACGACCGGGTCCGCCAGCTCTACGAGCGTCTGCTGG
AGAAGACAGATCACGTCAAGGTGTGGATTAACTACGCCCGCTTCGAGATC
AACGTCCCCGACGAGGAAGAAGAGGAAGAGGAGGAGGAAGAGGAGCGGCC
GATCAGCGAGGATGCCAAGCGTCGTGCTCGGGCCGTTTTCGAACGAGCTC
ACAAGGTGTTCAAGGAGAAGGAGCTCAAGGAAGAGCGCGTGGAATTGCTC
AATGCTTGGCGGTCATTCGAGCACACGCACGGTTCACCAGAAGACATCGA
CAAGATCGAGAAACAGATGCCCCGGCGAGTCAAGAAGCGGCGCAAGTTGG
ACGACGATCGGTACGAGGAGTACATGGATTACGTATTCCCAGCAGACGAC
CAGTCGGCGGCGAATCTGTCGAAGCTGCTGCAAAGAGCTCACCAATGGAA
GCAGCAACAGCAACAACAGGGGGATGGAGCATAGATGGAGTCGTCACGCG
GCCCTCCCAGGGTCAAGAACAAGGCTGCGGCGCCAGTCCAGATCTCGGCG
GAGCAGCTGCTTCGCGAGGCCGTGGACCGGCAGGAGCCCGCATTGCAGGC
GCCGACGCAGCGCTTTGCCGACCTGGAAGAACTGCACGAATACCAGGGCC
GCAAGCGAAAAGAGTTCGAAGACTATGTGCGTCGGAACCGAATTAACATG
AACAACTGGATGCGCTATGCGGCATGGGAGCTGGAGCAAAAGGAGTTCCG
CCGGGCGCGTTCAATCTTTGAACGGGCGCTGGACGTCAGCCCGACCTCGG
TGGTTCTGTGGATTCGGTACATCGAGTCGGAGATGCGGAATCGCAACATC
AATCATGCCAGGAACTTGCTCGACCGTGCGGTGACGATCTTGCCTCGGGT
GGATAAGCTGTGGTACAAGTATGTCTACATGGAGGAGACACTGGGCAACA
TTGCGGGTACACGACAGGTCTTTGAGCGGTGGATGTCTTGGGAGCCGGAA
GAGGGAGCTTGGAGCGCCTATATCAAGCTGGAAAAGCGGTACAATGAGTT
CGAGAGGGCGCGCGCGATCTTCCAGCGGTTCACCATTGTTCACCCTGAAC
CACGCAATTGGATCAAGTGGGCTCGGTTTGAAGAGGAGTATGGAACGAGC
GATCTCGTGCGGGAGGTGTATGGAATGGCGATTGAGACTCTGGGAGAGGA
TTTCATGGACGAGAAGCTCTTCATCGGCTATGCCAAGTTCGAGGCGAAGT
TGAAGGAGTACGAACGTGCCCGGGCGATTTACAAGTATGCCTTAGACCGA
CTTCCTCGCTCAAAGTCCACGGCCCTTCACAAGTCCTATACAACATTCGA
GAAACAATATGGTGACCGGGAAGGCGTTGAGGATGTTATTCTCTCAAAAC
GCAGAGTCCAGTACGAGGAGCAACTGAAAGAGAACTCGCGGAACTACGAC
ATATGGTTCGACTTTGCCCGGCTCGAGGAAACCTCGGGTGACCCCGACCG
AGTACGCGACATCTACGAACGCGCAATCGCTCAGATACCACCATCGCAGG
AGAAGCGGCACTGGAGACGGTATATCTACCTGTGGGTATTCTACGCCATT
TGGGAGGAAATGGAAGCCAAGGACGCCGAGCGTGCGCGCCAAATCTACAA
CGAGTGTCTCAAGTTGATTCCCCACAAAAAGTTCACCTTTGCCAAGATCT
GGCTCCTGAAGGCGCAGTTTGAGATCCGTCAGATGAATCTCCAAGCCGCT
CGTAAGACGCTTGGCCAGGCCATCGGCATGTGCCCGAAGGATAAACTCTT
CCGGGGATACATTGATCTAGAGCGCCAGCTGTTCGAGTTCGTGCGGTGCC
GGACACTGTTCGAAAAGCAGATCGAGTGGAATCCTTCCAACAGCCAGTCA
TGGATCAAGTATGCCGAATTGGAGCGCGGGCTGGACGACACCGACCGTGC
ACGAGCCATCTACGAGCTTGGAATTGACCAGCCGACACTCGATATGCCCG
AGTTGGTGTGGAAGTCGTACATTGACTTTGAGGAGTACGAAGGCGAATAC
GACCGGGTCCGCCAGCTCTACGAGCGTCTGCTGGAGAAGACAGATCACGT
CAAGGTGTGGATTAACTACGCCCGCTTCGAGATCAACGTCCCCGACGAGG
AAGAAGAGGAAGAGGAGGAGGAAGAGGAGCGGCCGATCAGCGAGGATGCC
AAGCGTCGTGCTCGGGCCGTTTTCGAACGAGCTCACAAGGTGTTCAAGGA
GAAGGAGCTCAAGGAAGAGCGCGTGGAATTGCTCAATGCTTGGCGGTCAT
TCGAGCACACGCACGGTTCACCAGAAGACATCGACAAGATCGAGAAACAG
ATGCCCCGGCGAGTCAAGAAGCGGCGCAAGTTGGACGACGATCGGTACGA
GGAGTACATGGATTACGTATTCCCAGCAGACGACCAGTCGGCGGCGAATC
TGTCGAAGCTGCTGCAAAGAGCTCACCAATGGAAGCAGCAACAGCAACAA
CAGGGGGATGGAGCATAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CLF1	KJC3_011965	Aspergillus niger KJC3	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_011965-T1.utr5p1	KJC3_011965-T1.utr5p1	Aspergillus niger KJC3	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_011965-T1.exon1	KJC3_011965-T1.exon1	Aspergillus niger KJC3	exon
KJC3_011965-T1.exon2	KJC3_011965-T1.exon2	Aspergillus niger KJC3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_011965-T1.cds	KJC3_011965-T1.cds	Aspergillus niger KJC3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_011965-T1.utr3p1	KJC3_011965-T1.utr3p1	Aspergillus niger KJC3	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
KJC3_011965-T1	KJC3_011965-T1-protein	Aspergillus niger KJC3	polypeptide

Properties


Property Name	Value
DBxref	InterPro:IPR013026
DBxref	InterPro:IPR019734
DBxref	InterPro:IPR011990
DBxref	InterPro:IPR003107
DBxref	PFAM:PF02184
Product	NineTeen Complex (NTC) component

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC3	2021-10-31

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ch8	supercontig	ch8:2132912..2135417 +

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KJC3_011965-T1, KJC3_011965-T1 (mRNA) Aspergillus niger KJC3

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KJC3_011965-T1, KJC3_011965-T1 (mRNA) Aspergillus niger KJC3