|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:2295491..2298933+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012009-T1 ID=KJC3_012009-T1|Name=KJC3_012009-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3443bp|location=Sequence derived from alignment at ch8:2295491..2298933+ (Aspergillus niger KJC3)
CCTTTTCCCTTTTTCTTTCTCACTTACTCACACTCACTCTCTGCCTACTC
TCGTTACAGTCTTCTCTCACTCAATTCTCTCCTTCACCTCCTACTCTCCT
TTTCCATTTTGGTCGCTCCCTCTACTATTTCCCTTTTGAATTTATTTTTA
TTATTCTGAATTTCTTAATTTTTTATTCTTATTTTCATTTTCTTGCTTTT
TCCCTGTCAGCTTAGTCCAACTCATTCCTTCTTTTTCCCTTTCTGTGCTG
TCCTATTCGACCTTGTCTTCATCGGACTTATACCTTCCTTGATCCTCCTC
TTCGTTCCCCTCCTCTCTCTCTTTTTTAATTATCACTCTCCAGATCTCTC
TCTCTGGTTTCAACCTCTCATACTCTCTCATTACTACATCGGATTTCCTT
TATAACTCCACTTGGCTGCAAGTATACACCCCAGACAGCTTGCCCGCCTA
CTTCAGTCCCGTCATTCCCTACCACCCGCCGCCGCCCTCCTCCCTTTTCC
TCTCCCTCCTGCTTCAAGTCCTTATCTTCCCGCCTTCCCCTCCTCCTGGC
TTGGTAGAGACCAGCTATATTCTCTCTCTGCGATCCAACCGTTCAATGGT
ATAGAGTTGCCTCGTCACAGCTGCGGCTTGTTGGCAGCAACTGGTCCTGT
ACCTTGAATACCTTCACACTTCGCCTCACCTCAACACTCCACCAACGATT
CCTATACTATTCCTCCTGTCTCTCTATATACCCTGACTCTCCGACTCGCA
CAACATGAATTACCTCCACCATCCCTACGCATTCACCGGCCATGCCGCCG
TCCCCATGGAGCAGCCGGTTGCCTTCGACCCAACGATGGCCCACCCGTCC
ATGATGCATCCAATGGATGGCTACCTCTACCCTCACCCGCCTTTTGACAT
GGTCGACTTCTACCATCAGCCAATCATGGACTACGAAGAATATGCAGAGA
ACCTCTCTCGCCCAAGGTTGACGAAGGAACAAGTTGAGACCTTGGAGGCC
CAATTTCAGGCGCACCCCAAACCCAGCAGCAACGTCAAGCGTCAATTGGC
GGCTCAAACCAATCTGAGTCTGCCACGAGTTGCTGTAAGTTATCCGTTGG
TCCACAGACTACTCGGCACACAGTGTACTAACGTATATCCAGAATTGGTT
CCAGAATCGCCGAGCAAAGGCTAAGCAACAAAAGAGACAAGAGGAGTTCG
AGAAGATGCAGAAGGCCAAGGCGGAAGCCGAAGAAGCCGCTCGCGGCAAG
TCGGAGTCCACGGAGAGCTCAGACTCGAAGGAGGACGCCAAAGACTCGAA
AGATGAGACCGATAAAGATACCCCCAAACAATCAGTGGAGAACACCGCCG
AGCGCACAAAAACGCCGGCTCCTTCGTCCTCGCGGCCTAAGCACCAGAAG
ACCAGAAGCGAGTCGGCACGGGAGGCTACCTTTGCTTCCCTGCAACGGGC
GTTGAATGCTGCTGTTGCTGCTCGTGACCGGTATGGCCAGGACGGCGAAA
ACAGCCAATCTCCCAGCATGGATGGGTCAGTGTCGCCGACCACAACCTTT
TCCAACAACCGCTGCGGCAGCCACGATAGCAGCAGACATGGACAGGGTGA
CCTCAGCTCTTCTTTCTCACAGAATGCCATCTCGTGGACGTCACAGAGTT
CTCAGGGTGCTCTTGGGTATGTGACGTCGGGAGAGTCGCTGACGATTCCC
GGCATGGACGGCACTCAACATGACGCCGGCCACGACTCAATGCAAAACGT
ACAGTTCCACCCCTCCCAGAACGAGGACTGGTCCCACCCGCTTCAGACGT
CAAAGTCTCTTTCTGGTTACCGCTCGGCCAGTGATGCTGAGGTTTCCTAC
AATGGTGTGCAATACCCTCTGCAACAAGATCTGTCATTGCCCAGGCGAGG
CTCTTCTGACGAGCTGGCCGACACATTGGAAGGGATTGGCATCAACACGC
ATCCCAGCTCGCAGCTTGTGAATGAAGGCGACCGTTCATCCTGGAAGGAA
CCCAGCAAGGAACTTGACCTTGCGGCCCGGAGAAAGCGCCCGAGGCCTGC
TGCCATTGGCACCTCGCGATCGTCCTCCATGTTGACGGGATCCTCCACCA
TGTCACCCTCCACGAGGCTCCCAAGCTACGGCAACGGCCATGCCGTGAGG
CAATCCAAGTCCGCGCAGGGTCTAAACTCCCGATATGCAGGTGTCAGGAA
GGCGTCTGCAGCTCAGCGTTCACCTCTCAATTTATCTACTTTTGCAGAGG
CCGGGGCTCTGGGCTCCAAGGCTGACATGTCGTCCATGCTACAACCGGCG
GTTACGACAGGGGGGTTGGCGCCACCAACACCCTTGACGCCGGAAGATCT
GCACCATCTGCTCCCGACCACTCCCAGCGATGGTGGCTACTGCCTGTCGG
CGCAACCGACCAGCCAATTGTTCCCTACCACACAGCCGATGCAGATCAAC
ATTGCATCACCTCCCGCGACTCCCTTGGCCGTGGATGTGCTCTCTTCCTA
CCCGTACCAGGGTGTTGCCCCTCCGATGTCTGCCCCTGCCCATTACACGT
CATTTGCCGATTATGCCTCCTGCGAAGCTCCCTTGACTGGCAGAAGCTGG
ACTGATGCCACGTCAATGCCGTCGCCTGAAGCATCCTTTCAGAGTCCCTG
TCAACTTCCACAGGCGGATCTGACAACGATGTCGTATGAGCAGGCGATGG
AACAGGGGGCTGACCATGTCCCCGTGACAGGGTCTCCATCCCTCGTTTAT
CACACGAGTGACGTCGACATGCCGACGTCGGCTGCTTTCTGTGGGGATTC
GAAGCAAACGGAGTTCCACATCTACGAGTTTCCGGAGCAGCAGGAAGCTC
ACCGATTTGTTGCACAGCAGCTTCCGTCGCAGAAGCCTAAAGCCTATACG
TTCAACAATCAAACACCGAACGACTTTTGAGCGCCACACGGCACCAACCA
ACCCATCTAATTTGTGCACGTACCATTCCTTTCGCCAGTCAATGTTTCTC
GGTGGGCCTGTAATATAACTACCCTCTACCTTCTTCACGATTCCCGGCTT
CTCGACCGTGGTCTCTAATACCAGAGTGGACCTCTGCTCTTCTTGGCATT
TCAGTGTTGCTTCACGTGGGACTCCTATATATATCCCAGGGCTTGTGTTG
TTCTTATGCATTCGTGTTGGTGTCTCTCTTTTTGGCGTCTACCCCGGTCT
GCGATCTGGTTCCTTTCAGGGTTGGGGATTTGAACATGTTTGAATATTAT
TTTGGATATATAGCATGTGGGCTTTGGGAAGCGGCTGCTTTTTCTTTTCT
TTCATTTCTTGGACTTACTGGAGGCTCTGTTTGGGTCACGTATCTACTGC
CATATTACCACCACTACTACATACTGTAATACAACTAATAGGGGATGGGC
AATGACTGGAAAAGCATTGTCTGTCTCGCATTCACTGGAATTA back to topCoding sequence (CDS) from alignment at ch8:2295491..2298933+ >KJC3_012009-T1 ID=KJC3_012009-T1|Name=KJC3_012009-T1|organism=Aspergillus niger KJC3|type=CDS|length=4236bp|location=Sequence derived from alignment at ch8:2295491..2298933+ (Aspergillus niger KJC3)
ATGAATTACCTCCACCATCCCTACGCATTCACCGGCCATGCCGCCGTCCC
CATGGAGCAGCCGGTTGCCTTCGACCCAACGATGGCCCACCCGTCCATGA
TGCATCCAATGGATGGCTACCTCTACCCTCACCCGCCTTTTGACATGGTC
GACTTCTACCATCAGCCAATCATGGACTACGAAGAATATGCAGAGAACCT
CTCTCGCCCAAGGTTGACGAAGGAACAAGTTGAGACCTTGGAGGCCCAAT
TTCAGGCGCACCCCAAACCCAGCAGCAACGTCAAGCGTCAATTGGCGGCT
CAAACCAATCTGAGTCTGCCACGAGTTGCTAATTGGTTCCAGAATCGCCG
AGCAAAGGCTAAGCAACAAAAGAGACAAGAGGAGTTCGAGAAGATGCAGA
AGGCCAAGGCGGAAGCCGAAGAAGCCGCTCGCGGCAAGTCGGAGTCCACG
GAGAGCTCAGACTCGAAGGAGGACGCCAAAGACTCGAAAGATGAGACCGA
TAAAGATACCCCCAAACAATCAGTGGAGAACACCGCCGAGCGCACAAAAA
CGCCGGCTCCTTCGTCCTCGCGGCCTAAGCACCAGAAGACCAGAAGCGAG
TCGGCACGGGAGGCTACCTTTGCTTCCCTGCAACGGGCGTTGAATGCTGC
TGTTGCTGCTCGTGACCGGTATGGCCAGGACGGCGAAAACAGCCAATCTC
CCAGCATGGATGGGTCAGTGTCGCCGACCACAACCTTTTCCAACAACCGC
TGCGGCAGCCACGATAGCAGCAGACATGGACAGGGTGACCTCAGCTCTTC
TTTCTCACAGAATGCCATCTCGTGGACGTCACAGAGTTCTCAGGGTGCTC
TTGGGTATGTGACGTCGGGAGAGTCGCTGACGATTCCCGGCATGGACGGC
ACTCAACATGACGCCGGCCACGACTCAATGCAAAACGTACAGTTCCACCC
CTCCCAGAACGAGGACTGGTCCCACCCGCTTCAGACGTCAAAGTCTCTTT
CTGGTTACCGCTCGGCCAGTGATGCTGAGGTTTCCTACAATGGTGTGCAA
TACCCTCTGCAACAAGATCTGTCATTGCCCAGGCGAGGCTCTTCTGACGA
GCTGGCCGACACATTGGAAGGGATTGGCATCAACACGCATCCCAGCTCGC
AGCTTGTGAATGAAGGCGACCGTTCATCCTGGAAGGAACCCAGCAAGGAA
CTTGACCTTGCGGCCCGGAGAAAGCGCCCGAGGCCTGCTGCCATTGGCAC
CTCGCGATCGTCCTCCATGTTGACGGGATCCTCCACCATGTCACCCTCCA
CGAGGCTCCCAAGCTACGGCAACGGCCATGCCGTGAGGCAATCCAAGTCC
GCGCAGGGTCTAAACTCCCGATATGCAGGTGTCAGGAAGGCGTCTGCAGC
TCAGCGTTCACCTCTCAATTTATCTACTTTTGCAGAGGCCGGGGCTCTGG
GCTCCAAGGCTGACATGTCGTCCATGCTACAACCGGCGGTTACGACAGGG
GGGTTGGCGCCACCAACACCCTTGACGCCGGAAGATCTGCACCATCTGCT
CCCGACCACTCCCAGCGATGGTGGCTACTGCCTGTCGGCGCAACCGACCA
GCCAATTGTTCCCTACCACACAGCCGATGCAGATCAACATTGCATCACCT
CCCGCGACTCCCTTGGCCGTGGATGTGCTCTCTTCCTACCCGTACCAGGG
TGTTGCCCCTCCGATGTCTGCCCCTGCCCATTACACGTCATTTGCCGATT
ATGCCTCCTGCGAAGCTCCCTTGACTGGCAGAAGCTGGACTGATGCCACG
TCAATGCCGTCGCCTGAAGCATCCTTTCAGAGTCCCTGTCAACTTCCACA
GGCGGATCTGACAACGATGTCGTATGAGCAGGCGATGGAACAGGGGGCTG
ACCATGTCCCCGTGACAGGGTCTCCATCCCTCGTTTATCACACGAGTGAC
GTCGACATGCCGACGTCGGCTGCTTTCTGTGGGGATTCGAAGCAAACGGA
GTTCCACATCTACGAGTTTCCGGAGCAGCAGGAAGCTCACCGATTTGTTG
CACAGCAGCTTCCGTCGCAGAAGCCTAAAGCCTATACGTTCAACAATCAA
ACACCGAACGACTTTTGAATGAATTACCTCCACCATCCCTACGCATTCAC
CGGCCATGCCGCCGTCCCCATGGAGCAGCCGGTTGCCTTCGACCCAACGA
TGGCCCACCCGTCCATGATGCATCCAATGGATGGCTACCTCTACCCTCAC
CCGCCTTTTGACATGGTCGACTTCTACCATCAGCCAATCATGGACTACGA
AGAATATGCAGAGAACCTCTCTCGCCCAAGGTTGACGAAGGAACAAGTTG
AGACCTTGGAGGCCCAATTTCAGGCGCACCCCAAACCCAGCAGCAACGTC
AAGCGTCAATTGGCGGCTCAAACCAATCTGAGTCTGCCACGAGTTGCTAA
TTGGTTCCAGAATCGCCGAGCAAAGGCTAAGCAACAAAAGAGACAAGAGG
AGTTCGAGAAGATGCAGAAGGCCAAGGCGGAAGCCGAAGAAGCCGCTCGC
GGCAAGTCGGAGTCCACGGAGAGCTCAGACTCGAAGGAGGACGCCAAAGA
CTCGAAAGATGAGACCGATAAAGATACCCCCAAACAATCAGTGGAGAACA
CCGCCGAGCGCACAAAAACGCCGGCTCCTTCGTCCTCGCGGCCTAAGCAC
CAGAAGACCAGAAGCGAGTCGGCACGGGAGGCTACCTTTGCTTCCCTGCA
ACGGGCGTTGAATGCTGCTGTTGCTGCTCGTGACCGGTATGGCCAGGACG
GCGAAAACAGCCAATCTCCCAGCATGGATGGGTCAGTGTCGCCGACCACA
ACCTTTTCCAACAACCGCTGCGGCAGCCACGATAGCAGCAGACATGGACA
GGGTGACCTCAGCTCTTCTTTCTCACAGAATGCCATCTCGTGGACGTCAC
AGAGTTCTCAGGGTGCTCTTGGGTATGTGACGTCGGGAGAGTCGCTGACG
ATTCCCGGCATGGACGGCACTCAACATGACGCCGGCCACGACTCAATGCA
AAACGTACAGTTCCACCCCTCCCAGAACGAGGACTGGTCCCACCCGCTTC
AGACGTCAAAGTCTCTTTCTGGTTACCGCTCGGCCAGTGATGCTGAGGTT
TCCTACAATGGTGTGCAATACCCTCTGCAACAAGATCTGTCATTGCCCAG
GCGAGGCTCTTCTGACGAGCTGGCCGACACATTGGAAGGGATTGGCATCA
ACACGCATCCCAGCTCGCAGCTTGTGAATGAAGGCGACCGTTCATCCTGG
AAGGAACCCAGCAAGGAACTTGACCTTGCGGCCCGGAGAAAGCGCCCGAG
GCCTGCTGCCATTGGCACCTCGCGATCGTCCTCCATGTTGACGGGATCCT
CCACCATGTCACCCTCCACGAGGCTCCCAAGCTACGGCAACGGCCATGCC
GTGAGGCAATCCAAGTCCGCGCAGGGTCTAAACTCCCGATATGCAGGTGT
CAGGAAGGCGTCTGCAGCTCAGCGTTCACCTCTCAATTTATCTACTTTTG
CAGAGGCCGGGGCTCTGGGCTCCAAGGCTGACATGTCGTCCATGCTACAA
CCGGCGGTTACGACAGGGGGGTTGGCGCCACCAACACCCTTGACGCCGGA
AGATCTGCACCATCTGCTCCCGACCACTCCCAGCGATGGTGGCTACTGCC
TGTCGGCGCAACCGACCAGCCAATTGTTCCCTACCACACAGCCGATGCAG
ATCAACATTGCATCACCTCCCGCGACTCCCTTGGCCGTGGATGTGCTCTC
TTCCTACCCGTACCAGGGTGTTGCCCCTCCGATGTCTGCCCCTGCCCATT
ACACGTCATTTGCCGATTATGCCTCCTGCGAAGCTCCCTTGACTGGCAGA
AGCTGGACTGATGCCACGTCAATGCCGTCGCCTGAAGCATCCTTTCAGAG
TCCCTGTCAACTTCCACAGGCGGATCTGACAACGATGTCGTATGAGCAGG
CGATGGAACAGGGGGCTGACCATGTCCCCGTGACAGGGTCTCCATCCCTC
GTTTATCACACGAGTGACGTCGACATGCCGACGTCGGCTGCTTTCTGTGG
GGATTCGAAGCAAACGGAGTTCCACATCTACGAGTTTCCGGAGCAGCAGG
AAGCTCACCGATTTGTTGCACAGCAGCTTCCGTCGCAGAAGCCTAAAGCC
TATACGTTCAACAATCAAACACCGAACGACTTTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0043565 | sequence-specific DNA binding |
| GO:0003677 | DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012009-T1.utr5p1 | KJC3_012009-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012009-T1.utr3p1 | KJC3_012009-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR009057 |
| DBxref | InterPro:IPR017970 |
| DBxref | InterPro:IPR001356 |
| DBxref | PFAM:PF00046 |
| DBxref | PFAM:PF05920 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:2295491..2298933 + |
|
