You are here

Home

KJC3_012023-T1, KJC3_012023-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012023-T1
Unique NameKJC3_012023-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:2343001..2344878+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012023-T1 ID=KJC3_012023-T1|Name=KJC3_012023-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1878bp|location=Sequence derived from alignment at ch8:2343001..2344878+ (Aspergillus niger KJC3)
CTTCAAATCATCACCAATTCTACTTTCGCGCCGCACTTTCTCCTGTCATC
CCGGTGCACAATACACTCCGCATGAGGCACACCTCTGGTCTCCACTAGAA
GCCCAGTACACCCCGCCTCGGGGCTCAGGACGCGCCAACGACACGTCTCC
GCAGCAAGCAGTTCAACCTACATACCGAGCGTCGGAATACCCTCCAGTCC
ATCACAATGGACGTCGTTCCCTCTACCACACCCGACGAGGCAGTGCGCCT
CTCCGCCAAGCGGACGGCCGAGCTCTTCGGTTCTGACTACCTAATGGTCA
CCCCGTCCGTCGCCAATGGCTCCATCGCCACGTCCTACCGGCGCAAAGCA
GAATACGAAGATGTGAAGGAACTCCCCCCAGCGCTCGCCGAAAAGCAAGC
CAAAGCCGTGGCCGCTGGACGCGCCAAACGCCCCAAGATCCAACCACAGG
CCCAAGCCGCCGTGGACGGCAGCGGCGCGTCCATGGCACTCGTCAAGAAG
GCCCCCGGCCCAGCAGCCGGCGGCGTCGGCGGTGAAAACGCTCCCAAGAG
TCTCATCCAACGTCCCTCGGCGACGAAACAGCAACGACCCGACTGGCACC
CGCCATGGAAGCTCATGCGGGTCATCTCCGGCCACTTGGGTTGGGTGCGC
AGTTTGGCCGTCGAGCCCAACAACGAGTGGTTTGCTAGTGGTGCAGGCGA
TCGGACCATCAAGATCTGGAATCTGGCTACAGGTGCCCTCCGTCTCACTC
TCACGGGTCACATTTCCACTGTCCGCGGCTTGGCCGTGTCCCCCCGACAT
CCGTACCTCTTCTCCTGCGGTGAAGACAAAATGGTCAAGTGTTGGGATCT
CGAAACCAACAAAGTCATCCGTCACTACCACGGCCACCTCAGCGGCGTCT
ACACCCTCGACCTGCACCCCCGTCTCGACCTCCTCGTCACAGGTGGTCGT
GACGGCGTAGCCCGCGTCTGGGACATGCGCACTCGCGCCAACGTCCACGT
CCTCGCCGGCCACAAGGGCACCGTCGCCGATGTCAAATGCCAGGAAGCCG
ACCCGCAGATCATCTCCGGCTCCCTGGACGCCACCGTCCGCCTCTGGGAT
CTCGCAGCCGGTAAATCCATGGGCGTGCTCACGCACCACAAGAAGGGTGT
GCGCGCTCTCGCCACTCACCCCCGCGAATTCACCTTCGCCTCCGCCAGCA
CCGGCTCCATTAAGCAATGGAAGTGCCCCGAGGGCGACTTCATGCAGAAC
TTCGATGGTCAAAACGCTATTATCAACACCCTCTCCGTCAACGAAGACAA
CGTCATGTTCTCCGGCGGTGATAACGGCTCCATGTGCTTCTGGGATTGGA
AGACCGGGTACCAGTTCCAGAGCATCGACGCTGTCGCTCAGCCGGGTTCT
CTGGAAGCCGAGGCGGGTATTATGGCTTCGACGTTTGATCGTACTGGCTT
GCGTCTTATTACTGGTGAGGCTGACAAGACTATTAAGATTTGGAAGCCGG
ATGATGAGGCCACCGAAGAATCGCACCCTGTTACCTGGGCCCCCACCTTG
GGGAGACAGAGGTATTAGTTTGTTAGTGTGGCTTGTGTGGTTCTGCTCAT
TATCATCAATACCCCGATGTCTTTTTTTTCAGTTCGTTTATCTTGGTGTG
TTGGGGGAGCTACTTCAAGGGGGATTTTTCTAGCTTTGATGTTATGTCAT
GCTGTGTATGCACTTAGGAGTTTAGCGTTAAATATTTGGGATGTCAGATT
GGCCCTGGGAAGGGCTCATAAAAGGAATGTATCATATAATCTCTTAGAGA
CTGAGGTGTCTGTCCTTATAGTTGCCGTTGACTTGTAGAAGTCACTAGAT
TGTGTGTAATGATGTCAAGGTTCATGGT
back to top

Coding sequence (CDS) from alignment at ch8:2343001..2344878+

>KJC3_012023-T1 ID=KJC3_012023-T1|Name=KJC3_012023-T1|organism=Aspergillus niger KJC3|type=CDS|length=1362bp|location=Sequence derived from alignment at ch8:2343001..2344878+ (Aspergillus niger KJC3)
ATGGACGTCGTTCCCTCTACCACACCCGACGAGGCAGTGCGCCTCTCCGC
CAAGCGGACGGCCGAGCTCTTCGGTTCTGACTACCTAATGGTCACCCCGT
CCGTCGCCAATGGCTCCATCGCCACGTCCTACCGGCGCAAAGCAGAATAC
GAAGATGTGAAGGAACTCCCCCCAGCGCTCGCCGAAAAGCAAGCCAAAGC
CGTGGCCGCTGGACGCGCCAAACGCCCCAAGATCCAACCACAGGCCCAAG
CCGCCGTGGACGGCAGCGGCGCGTCCATGGCACTCGTCAAGAAGGCCCCC
GGCCCAGCAGCCGGCGGCGTCGGCGGTGAAAACGCTCCCAAGAGTCTCAT
CCAACGTCCCTCGGCGACGAAACAGCAACGACCCGACTGGCACCCGCCAT
GGAAGCTCATGCGGGTCATCTCCGGCCACTTGGGTTGGGTGCGCAGTTTG
GCCGTCGAGCCCAACAACGAGTGGTTTGCTAGTGGTGCAGGCGATCGGAC
CATCAAGATCTGGAATCTGGCTACAGGTGCCCTCCGTCTCACTCTCACGG
GTCACATTTCCACTGTCCGCGGCTTGGCCGTGTCCCCCCGACATCCGTAC
CTCTTCTCCTGCGGTGAAGACAAAATGGTCAAGTGTTGGGATCTCGAAAC
CAACAAAGTCATCCGTCACTACCACGGCCACCTCAGCGGCGTCTACACCC
TCGACCTGCACCCCCGTCTCGACCTCCTCGTCACAGGTGGTCGTGACGGC
GTAGCCCGCGTCTGGGACATGCGCACTCGCGCCAACGTCCACGTCCTCGC
CGGCCACAAGGGCACCGTCGCCGATGTCAAATGCCAGGAAGCCGACCCGC
AGATCATCTCCGGCTCCCTGGACGCCACCGTCCGCCTCTGGGATCTCGCA
GCCGGTAAATCCATGGGCGTGCTCACGCACCACAAGAAGGGTGTGCGCGC
TCTCGCCACTCACCCCCGCGAATTCACCTTCGCCTCCGCCAGCACCGGCT
CCATTAAGCAATGGAAGTGCCCCGAGGGCGACTTCATGCAGAACTTCGAT
GGTCAAAACGCTATTATCAACACCCTCTCCGTCAACGAAGACAACGTCAT
GTTCTCCGGCGGTGATAACGGCTCCATGTGCTTCTGGGATTGGAAGACCG
GGTACCAGTTCCAGAGCATCGACGCTGTCGCTCAGCCGGGTTCTCTGGAA
GCCGAGGCGGGTATTATGGCTTCGACGTTTGATCGTACTGGCTTGCGTCT
TATTACTGGTGAGGCTGACAAGACTATTAAGATTTGGAAGCCGGATGATG
AGGCCACCGAAGAATCGCACCCTGTTACCTGGGCCCCCACCTTGGGGAGA
CAGAGGTATTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PRP46KJC3_012023Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012023-T1.utr5p1KJC3_012023-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012023-T1.exon1KJC3_012023-T1.exon1Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012023-T1.cdsKJC3_012023-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012023-T1.utr3p1KJC3_012023-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012023-T1KJC3_012023-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09262KUJ
DBxrefInterPro:IPR036322
DBxrefInterPro:IPR017986
DBxrefInterPro:IPR019775
DBxrefInterPro:IPR015943
DBxrefInterPro:IPR001680
DBxrefInterPro:IPR020472
DBxrefPFAM:PF00400
Productpre-mRNA-splicing factor prp46
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:2343001..2344878 +
Powered by Drupal