You are here

Home

KJC3_012031-T3, KJC3_012031-T3 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012031-T3
Unique NameKJC3_012031-T3
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:2367059..2369085-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012031-T3 ID=KJC3_012031-T3|Name=KJC3_012031-T3|organism=Aspergillus niger KJC3|type=mRNA|length=2027bp|location=Sequence derived from alignment at ch8:2367059..2369085- (Aspergillus niger KJC3)
CAATTATGATCTCCCCCTCAAAGTGTTGGCGAGAGATCCAACTGACAGGC
TCTCATCCTTCGCTTCTTACTATGCAAATCCACTGAAAGGTCAAGCTCAC
TATTCCACCAGTGGAGAAGGTACTACTGCAAGTATGCACTGTAGATATGA
ACAGCCCTCTGAAGCGTGTCCCTACACATAGCCAGCCAACATGAGAAGAC
AAAGAGCATTCACCCATCGATCCAAGAATGGATGCCGCACCTGTCGGTCA
GTCTTTAATCCTTCCATTTCCTACTTCTCCGCTTCCGCTCATCAACATCA
AGACTAGGCTCCTGATCCTAGGGTAAGCAGCTAATCCCCCATGTCCGTGC
ACGCAGGTCCCGCCATATCAAATGTGATGAAACCCCAAATGCATGCCGCA
ACTGCACCTCCACTGGGCGCAAATGTGACGGGTACACCCAATATCGATTA
CCCTTTCGTAAGGCGACACTACCAGTCTCCAAACCATCCAGGAGCCTCAT
CGTCTGTCTGCCCGGACTAGATTCCGATGAGCGTCGATGTCTGCAGTTCT
TCGAGCACAACACCATCCCCATGCTAGTGGGGTATGCCGACTCGGAAGTA
TGGCAGCGTCTCGTGCTACAAATGTGTCACAGAGAACCCGCCGTCTGCCA
CGCAGTAGTCGCGCTCAGCGCCTTTCACGAAAACTACGAGCGGAGCAGCA
TGAACATGGAACCAAAACCCGATCACCGCCACCACCACTACGCCCTGGAA
CAATACAACCGTTCCATGGCGATGCTGCGCCGGCGCATCCAGTCCAACGA
CCCCCAAGTCCGCAGCATCACACTCATGTGCTGCGTCGTGTTCGTAATCC
TTGAACTCCTCGAGGGGGACTACACCAATGCCTTCGCCCATCTACACCAA
GGCCTCAACATCCTGAAAACCCAATCAACTCACCACGCACTAACCACCGA
GCGTATCCTCGCCAAAGCATTCCTTCAACTCAACACCCCCCGAGCCTACT
GGAACGGCCCCGACGTCGTCGTAACCGGCCACCCTCCCAAGGGGAGCGTA
TCCGAAGTAGCCTACTCAAAAACACCAATCCACAGCATCGCCGAAGCAAA
AGAGCGTCTACGAGTCCTAATGAACAACATCTTCCACCTCCAATCCCTCT
GCAACCTCTTCTTCCGCGGCGAACCAGAAGACCCAACCTCCACCACCCCT
CTAACCCTCTCCGCCAAACAAACCACCCTCCACCACGACCTAACAGACTT
CGCCCTGGACCTCAAATCATTCATCTCCTCCCATAAATCCAACACTGCCT
GGACGTTACGAGAAACCCGCAGCGTGGACGTCATCCTCACACACGTAGCA
ACCCTAACCAGCATGCTGGGCTGTTCCCTCGACACAACGGAACTAGGCTA
CGACGACTTCCTACCCGAATTCAAGCGCATCAACGAACTCTGCGAGCGAA
TCACCACCAGCTTCGTGACCGAGTACGGGAGTTACGAGAACCTCCCCACC
ATGGTCACTGACGTCGGGGTCTTGCCGTCGCTGTTCTGGTGCTGTGTGAG
GTGTCGGGATGCAGAGACGAGAGAGCGAGCGCTTCAGTTGCTGAAGATGT
GGCCGCATCGAGAGGGGTTTTATGACTCGTATTTGATTCTGGGGATTTGT
CGGGGGCTGATGGATATTGAGGAGGAGGGGAGGGATGGCGAGGGGTTTAT
TCCGAGGGAGGCTCGTGTGCATACGCACACGGTTGAGGTTGCGGAGGATC
GGAGGAGTATGGTTATTAGGTATGTGTTGGCTGGTGCTGGTGGTGGCGAG
CAGGAGAGGGTGGTGGTGCTGGAGTAAGTACCTTTGTTGTGCGATTTGTT
CCAGGGAAGGGATATTTCATCGATGGTAATGTGTATATATGGAGAGATCG
TATATACAACCATGCAGATATAATAGTATTACTCTATTAGTGAACGGAAA
AGAGAATGAAGGAGGACAGGCAGCTCTCCTGGGAAAGGTTTCGGGAATGA
TGTCTATTTGTACCTCCTATTAACATA
back to top

Coding sequence (CDS) from alignment at ch8:2367059..2369085-

>KJC3_012031-T3 ID=KJC3_012031-T3|Name=KJC3_012031-T3|organism=Aspergillus niger KJC3|type=CDS|length=3024bp|location=Sequence derived from alignment at ch8:2367059..2369085- (Aspergillus niger KJC3)
CTAATCCCCCATGTCCGTGCACGCAGGTCCCGCCATATCAAATGTGATGA
AACCCCAAATGCATGCCGCAACTGCACCTCCACTGGGCGCAAATGTGACG
GGTACACCCAATATCGATTACCCTTTCGTAAGGCGACACTACCAGTCTCC
AAACCATCCAGGAGCCTCATCGTCTGTCTGCCCGGACTAGATTCCGATGA
GCGTCGATGTCTGCAGTTCTTCGAGCACAACACCATCCCCATGCTAGTGG
GGTATGCCGACTCGGAAGTATGGCAGCGTCTCGTGCTACAAATGTGTCAC
AGAGAACCCGCCGTCTGCCACGCAGTAGTCGCGCTCAGCGCCTTTCACGA
AAACTACGAGCGGAGCAGCATGAACATGGAACCAAAACCCGATCACCGCC
ACCACCACTACGCCCTGGAACAATACAACCGTTCCATGGCGATGCTGCGC
CGGCGCATCCAGTCCAACGACCCCCAAGTCCGCAGCATCACACTCATGTG
CTGCGTCGTGTTCGTAATCCTTGAACTCCTCGAGGGGGACTACACCAATG
CCTTCGCCCATCTACACCAAGGCCTCAACATCCTGAAAACCCAATCAACT
CACCACGCACTAACCACCGAGCGTATCCTCGCCAAAGCATTCCTTCAACT
CAACACCCCCCGAGCCTACTGGAACGGCCCCGACGTCGTCGTAACCGGCC
ACCCTCCCAAGGGGAGCGTATCCGAAGTAGCCTACTCAAAAACACCAATC
CACAGCATCGCCGAAGCAAAAGAGCGTCTACGAGTCCTAATGAACAACAT
CTTCCACCTCCAATCCCTCTGCAACCTCTTCTTCCGCGGCGAACCAGAAG
ACCCAACCTCCACCACCCCTCTAACCCTCTCCGCCAAACAAACCACCCTC
CACCACGACCTAACAGACTTCGCCCTGGACCTCAAATCATTCATCTCCTC
CCATAAATCCAACACTGCCTGGACGTTACGAGAAACCCGCAGCGTGGACG
TCATCCTCACACACGTAGCAACCCTAACCAGCATGCTGGGCTGTTCCCTC
GACACAACGGAACTAGGCTACGACGACTTCCTACCCGAATTCAAGCGCAT
CAACGAACTCTGCGAGCGAATCACCACCAGCTTCGTGACCGAGTACGGGA
GTTACGAGAACCTCCCCACCATGGTCACTGACGTCGGGGTCTTGCCGTCG
CTGTTCTGGTGCTGTGTGAGGTGTCGGGATGCAGAGACGAGAGAGCGAGC
GCTTCAGTTGCTGAAGATGTGGCCGCATCGAGAGGGGTTTTATGACTCGT
ATTTGATTCTGGGGATTTGTCGGGGGCTGATGGATATTGAGGAGGAGGGG
AGGGATGGCGAGGGGTTTATTCCGAGGGAGGCTCGTGTGCATACGCACAC
GGTTGAGGTTGCGGAGGATCGGAGGAGTATGGTTATTAGGTATGTGTTGG
CTGGTGCTGGTGGTGGCGAGCAGGAGAGGGTGGTGGTGCTGGAGTAAATG
CCGCACCTGTCGCTAATCCCCCATGTCCGTGCACGCAGGTCCCGCCATAT
CAAATGTGATGAAACCCCAAATGCATGCCGCAACTGCACCTCCACTGGGC
GCAAATGTGACGGGTACACCCAATATCGATTACCCTTTCGTAAGGCGACA
CTACCAGTCTCCAAACCATCCAGGAGCCTCATCGTCTGTCTGCCCGGACT
AGATTCCGATGAGCGTCGATGTCTGCAGTTCTTCGAGCACAACACCATCC
CCATGCTAGTGGGGTATGCCGACTCGGAAGTATGGCAGCGTCTCGTGCTA
CAAATGTGTCACAGAGAACCCGCCGTCTGCCACGCAGTAGTCGCGCTCAG
CGCCTTTCACGAAAACTACGAGCGGAGCAGCATGAACATGGAACCAAAAC
CCGATCACCGCCACCACCACTACGCCCTGGAACAATACAACCGTTCCATG
GCGATGCTGCGCCGGCGCATCCAGTCCAACGACCCCCAAGTCCGCAGCAT
CACACTCATGTGCTGCGTCGTGTTCGTAATCCTTGAACTCCTCGAGGGGG
ACTACACCAATGCCTTCGCCCATCTACACCAAGGCCTCAACATCCTGAAA
ACCCAATCAACTCACCACGCACTAACCACCGAGCGTATCCTCGCCAAAGC
ATTCCTTCAACTCAACACCCCCCGAGCCTACTGGAACGGCCCCGACGTCG
TCGTAACCGGCCACCCTCCCAAGGGGAGCGTATCCGAAGTAGCCTACTCA
AAAACACCAATCCACAGCATCGCCGAAGCAAAAGAGCGTCTACGAGTCCT
AATGAACAACATCTTCCACCTCCAATCCCTCTGCAACCTCTTCTTCCGCG
GCGAACCAGAAGACCCAACCTCCACCACCCCTCTAACCCTCTCCGCCAAA
CAAACCACCCTCCACCACGACCTAACAGACTTCGCCCTGGACCTCAAATC
ATTCATCTCCTCCCATAAATCCAACACTGCCTGGACGTTACGAGAAACCC
GCAGCGTGGACGTCATCCTCACACACGTAGCAACCCTAACCAGCATGCTG
GGCTGTTCCCTCGACACAACGGAACTAGGCTACGACGACTTCCTACCCGA
ATTCAAGCGCATCAACGAACTCTGCGAGCGAATCACCACCAGCTTCGTGA
CCGAGTACGGGAGTTACGAGAACCTCCCCACCATGGTCACTGACGTCGGG
GTCTTGCCGTCGCTGTTCTGGTGCTGTGTGAGGTGTCGGGATGCAGAGAC
GAGAGAGCGAGCGCTTCAGTTGCTGAAGATGTGGCCGCATCGAGAGGGGT
TTTATGACTCGTATTTGATTCTGGGGATTTGTCGGGGGCTGATGGATATT
GAGGAGGAGGGGAGGGATGGCGAGGGGTTTATTCCGAGGGAGGCTCGTGT
GCATACGCACACGGTTGAGGTTGCGGAGGATCGGAGGAGTATGGTTATTA
GGTATGTGTTGGCTGGTGCTGGTGGTGGCGAGCAGGAGAGGGTGGTGGTG
CTGGAGTAAATGCCGCACCTGTCG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0042025host cell nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_012031KJC3_012031Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012031-T3KJC3_012031-T3-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012031-T3.cdsKJC3_012031-T3.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012031-T3.utr3p1KJC3_012031-T3.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012031-T3.exon3KJC3_012031-T3.exon3Aspergillus niger KJC3exon
KJC3_012031-T3.exon2KJC3_012031-T3.exon2Aspergillus niger KJC3exon
KJC3_012031-T3.exon1KJC3_012031-T3.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012031-T3.utr5p2KJC3_012031-T3.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_012031-T3.utr5p1KJC3_012031-T3.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR001138
DBxrefInterPro:IPR021858
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:2367059..2369085 -
Powered by Drupal