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KJC3_012073-T2, KJC3_012073-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012073-T2
Unique NameKJC3_012073-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:2488442..2490078-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012073-T2 ID=KJC3_012073-T2|Name=KJC3_012073-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1637bp|location=Sequence derived from alignment at ch8:2488442..2490078- (Aspergillus niger KJC3)
GTCTCATGTTCCGCGGAGGATCACACCTTCCTATCTGGAACTGTTCCTAT
CATCTTTCCCAAAAAGCAACAAGATCCCGATTCATTCTCTCTCAATCGGC
CATTGTCCCCGAACAGGAAGCTTCGAACAGCCCCAGACATCTTCTTCCTT
TCTCTCCCCCCAATCTCACTTCTCTTTCTTTCCTATGCATTCTCTGATAC
CCACCATCTTTTACGACTCTTCCCCGACGACGCTGGGAATTTATACCATT
CTTTGCGGACTATTCCTATACTCTGCTAGCAAAATGTTCGGCTTTGGTCG
TAATCAGTTCGTCGTTCAGGGCAGGGTATGTTTCCATCGTCGCCTCCCAT
GTGTTGCCCTTAGCATGGTTGGCTAACCTCTTCTTTAGACCGTCGTTATC
ACGGGCGGTTCGGAGGGGATGGGCAAGGCCGTGGCTTGCCAGCTTGCAGA
GAAGGGTGCAAATGTTGTGCTTGTCGCACGCACGGAGTCGAAGCTCCAGG
ATGCCCTCGAGGCTGTCAAGGTAAGTAGAGCCTCGGTTTTTTTGGAAGAA
TCTCAGCTAACTCTCAATTCTCTTGAAGGGTACGGCGGCTGAAGCCGACC
GGCAGAGATTCCACTACATCTGTGCGGATCTGACCAATGCTGCGGAGTGT
GACCGTGTCATGGCCGAAGTCACCGAATGGAACCACGGACAATCTCCCGA
TATCGTATGGTGCTGCGCAGGATACTGCAGCCCCGGCTTCTTTGCCGAGA
CCCCCGTCCAGACATTGAGGGACCAAATGGATACGGTGTACTGGACAGCT
GCCAACACTGCTCATGCCATCCTGAGACGGTGGCTAGTACCTATTAGCCC
CAGCCAGCAGATGCCACTACCTCCCAGACACCTTATCTTCACATGCTCTA
CCCTCGCATTTGTGCCCATTGCTGGTTATGCTCCTTACTCGCCAGCCAAA
GCCGCGATCCGCTCATTGTCTGATACTCTCAGCCAAGAAATTGAGATGTA
CAACGGTTCTCGCGCCGACAAGTGCCGCTCGGAGGCTCCAGCCACGGACG
TGAAGATCCATACAGTCTTCCCCATGGGCATTCTCAGCCCTGGATTCGAC
AACGAACAGAAGCTCAAGCCGGAGCTTACTAAGAAGCTGGAGGCTGCTGA
CAAGCCACAGACTCCGAGGGAGGTTGCAAACATTGCGATCAAGGCCCTGG
AGAGGGGCGAGTACATGATCACCACGATGTTCGTTGGCGATGTGATGAAG
GGATCAGCGCTCGGAGGCAGCCAACGGAATTCATTCATTAAGGATACTTT
CACTGGCTGGCTCAGCAACTTGTTGTTCCTGCATGTCAGCCCCGATCTCA
GGAGGCAGGCCTGGAGCTGGGGTGAGAAGCACGGCGTCCCATCTCGCCCG
AGAGAGTAATCAATGGGGGTCTTCTATGCTTTGTGTGCCGTCGTTTGGTG
TATGCGTTAGATACCCTGAGCGTGTCCTCTCTTTATCCTTATGGCCATTA
TTATGTTCGCTGGAGTATCATGTACTGAAAAATTCCGATTGATCATTATT
TCAAGGTCACCATTGTTCCACTGTCTTCATGTTTTAGCTTGAAGGCCAGA
TTCCATAGGCTATACTGTAACTAGGAGCTCGGTGCAG
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Coding sequence (CDS) from alignment at ch8:2488442..2490078-

>KJC3_012073-T2 ID=KJC3_012073-T2|Name=KJC3_012073-T2|organism=Aspergillus niger KJC3|type=CDS|length=750bp|location=Sequence derived from alignment at ch8:2488442..2490078- (Aspergillus niger KJC3)
ATGGCCGAAGTCACCGAATGGAACCACGGACAATCTCCCGATATCGTATG
GTGCTGCGCAGGATACTGCAGCCCCGGCTTCTTTGCCGAGACCCCCGTCC
AGACATTGAGGGACCAAATGGATACGGTGTACTGGACAGCTGCCAACACT
GCTCATGCCATCCTGAGACGGTGGCTAGTACCTATTAGCCCCAGCCAGCA
GATGCCACTACCTCCCAGACACCTTATCTTCACATGCTCTACCCTCGCAT
TTGTGCCCATTGCTGGTTATGCTCCTTACTCGCCAGCCAAAGCCGCGATC
CGCTCATTGTCTGATACTCTCAGCCAAGAAATTGAGATGTACAACGGTTC
TCGCGCCGACAAGTGCCGCTCGGAGGCTCCAGCCACGGACGTGAAGATCC
ATACAGTCTTCCCCATGGGCATTCTCAGCCCTGGATTCGACAACGAACAG
AAGCTCAAGCCGGAGCTTACTAAGAAGCTGGAGGCTGCTGACAAGCCACA
GACTCCGAGGGAGGTTGCAAACATTGCGATCAAGGCCCTGGAGAGGGGCG
AGTACATGATCACCACGATGTTCGTTGGCGATGTGATGAAGGGATCAGCG
CTCGGAGGCAGCCAACGGAATTCATTCATTAAGGATACTTTCACTGGCTG
GCTCAGCAACTTGTTGTTCCTGCATGTCAGCCCCGATCTCAGGAGGCAGG
CCTGGAGCTGGGGTGAGAAGCACGGCGTCCCATCTCGCCCGAGAGAGTAA
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
TSC10_1KJC3_012073Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012073-T2KJC3_012073-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012073-T2.cdsKJC3_012073-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012073-T2.utr3p1KJC3_012073-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012073-T2.exon2KJC3_012073-T2.exon2Aspergillus niger KJC3exon
KJC3_012073-T2.exon1KJC3_012073-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012073-T2.utr5p2KJC3_012073-T2.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_012073-T2.utr5p1KJC3_012073-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036291
DBxrefInterPro:IPR002347
DBxrefPFAM:PF00106
Product variant 2
Product3-dehydrosphinganine reductase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:2488442..2490078 -
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