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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:2508659..2510859+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012081-T1 ID=KJC3_012081-T1|Name=KJC3_012081-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2201bp|location=Sequence derived from alignment at ch8:2508659..2510859+ (Aspergillus niger KJC3)
CATCCACCTTGCTGCGAATCATCTATCGTTCTGCCGAGCTCTCACGGTCC
ACAAAGGGATTCTCGTCCGTGTCACTCGCCTAGATCGACAGGGGCAGCTG
GACGAACAGACCACGGCACAACAATTGGTTCCAAACGAACCTAACCTCTG
CTAGCAACGCAACACCTTCGGCCTCGAATTTGAGGTCGACATCAATTAGC
CAGTATGGTAAGTTACCTTGCTATTTGATGCCAATTGAGTTTTTCCCGGT
TGAGCGACGATCGTCTGACATCCTCGTGTTTCCCCTACAGGTATCATCTC
TACGACGTCTCGCAGCGGACCATGCAGCGTTGCACGAAGAACTTCCTCCC
AACTATCTCTTTCCCTCCGACGATGCCTCTGCCGGGGACGACTTGACACA
GCTCACCACTCTCCTGGCCGGGCCACAGGGTACACCATACTCGCAGGGCC
TATGGCGATTGCATCTGAAGATGCCGGAGGACTACCCCAAGAGCCCACCA
AAGGCAACATTCAGGACAAGGATATGGCATCCAAATGTGGAGGAATCGAC
GGGTGCGGTCTGCGTGGATACACTGAAGCGGGACTGGAAGCCCAACTTGA
CCTTGAAGGACGTTTTGATTGTATGTATCCCTACCATATACAGTCGACGA
TTGCGGATCTTCATCTGACATGTTGTTTAGACAATCTCTTGCCTCCTCAT
ATATCCCAACCCAGACTCCGCACTGAATTCCGCAGCCGGCGCACTTCTCC
AAGAGAACTACGATGCATTCGCCCGCCAAGCGAAACTAATGACCTCCATC
CACGCTCCCGTTCCATCAGAGTTAGCGTCAGCAGTATCCGAGGCGAAAAC
AAGAGGCGAAGACGCCGACACAGTCATCCCCGAAGAGCAAATACCGTCCC
GCTCACTACGACCACGGAAGGGAGCCAGAATCGCCTCAGTCACTATGAAA
AAGCGAACTACTCGGAGAAGCGCTGAAGAGAGCTCAAGCTCACGAGCATA
TTCGCATCAGCCCAGCACACCTATTGAACAAGAAGCACAGCAACCAGAGG
AACCTCATGACACCCTTACCCTTGATACGACCGTCTCCGACAGTGAATCA
GAAACATCTACCAACGCCAGTAAAGAGAACGACCCTTCCCTATCTCCTTC
CCCAGTCCGACTCGCACCACCTAGCATCCGCAAGAACGCTTTCGGGAAAC
GCCCCCTTTCCGTCCTAACCATGCCCATGGACGTGGACGATCCCTTCGCC
ATGGGCACAGAAGAAACAACAATAGACGGCATGTCCGCATCCGAGAAGAA
CATCGCAGCAAACCACCCTAGTGACCTCCCAGAACGCGGCCACTCCCCAC
AGAGAAAGTCCCCGAAGCTGTCCGTACTCGACAAAGGCATCAACTCATCA
GGCCGGATACGCGAAGATGTCCAGATCTTCGAAGACGATCCCGATCCTGC
CGAGCTAGGCTTCATCAGGCGAGCCAGCGGCGACGGCAAGGAAAATCCCC
GAGCCTTAGCCGGATTGAAAGATACCGACCCCGCCATCCGGACGTCTAAT
CCAAGCAATCCCCCAACGATCCTTGCCCCCTCAGCATCGAGATCCGTCTC
CTCCGGCTCGGGCTTATCAAAACCAATCTTTGGATCACGCAAAGTCTCGT
CGTCGAATGGCAAGAAAGCCAAACCTCGGATCGGCATTCGCAGACTCTGA
GCTTAATAACCACCACCACTGTTACTTATACCCACGCCTGTATCTTCTCA
ATACCCTCTTTCTATTCACTTCCCGCTACCTCACTACATATACCATACCA
CTACCACCGTTTAATACCCAAACGAACATAGCCACAACCACTCATGAACA
CAAATACTACATGCATTACATTTCTTGACTGGATTCATTCAAGACAACCT
CCAGCGTCATCACGTGCAACGAAAACAACTTCAATGAAGGAAATGGATAC
CTTCTTCTTTCTTCTATCACATTGATTAGATTACCCGGCATGGCTTCTCC
CCCTTTTGCATATCCTCACGGCATGTACCGTACACTTCTTTGCTGCTTTC
ATAGGCATAGCCATAGCCATATTCAAACATAGCATGACCATACATTAAGG
CCAATGATCGTGCATTGGATGGATCAGTACAATAAATACGTTTCCAATTT
TTTCCCTTTCGATCAATTATTTCCTTGTTAAAACACTAGGTATGACTGGC
T back to topCoding sequence (CDS) from alignment at ch8:2508659..2510859+ >KJC3_012081-T1 ID=KJC3_012081-T1|Name=KJC3_012081-T1|organism=Aspergillus niger KJC3|type=CDS|length=4059bp|location=Sequence derived from alignment at ch8:2508659..2510859+ (Aspergillus niger KJC3)
ATGGTATCATCTCTACGACGTCTCGCAGCGGACCATGCAGCGTTGCACGA
AGAACTTCCTCCCAACTATCTCTTTCCCTCCGACGATGCCTCTGCCGGGG
ACGACTTGACACAGCTCACCACTCTCCTGGCCGGGCCACAGGGTACACCA
TACTCGCAGGGCCTATGGCGATTGCATCTGAAGATGCCGGAGGACTACCC
CAAGAGCCCACCAAAGGCAACATTCAGGACAAGGATATGGCATCCAAATG
TGGAGGAATCGACGGGTGCGGTCTGCGTGGATACACTGAAGCGGGACTGG
AAGCCCAACTTGACCTTGAAGGACGTTTTGATTACAATCTCTTGCCTCCT
CATATATCCCAACCCAGACTCCGCACTGAATTCCGCAGCCGGCGCACTTC
TCCAAGAGAACTACGATGCATTCGCCCGCCAAGCGAAACTAATGACCTCC
ATCCACGCTCCCGTTCCATCAGAGTTAGCGTCAGCAGTATCCGAGGCGAA
AACAAGAGGCGAAGACGCCGACACAGTCATCCCCGAAGAGCAAATACCGT
CCCGCTCACTACGACCACGGAAGGGAGCCAGAATCGCCTCAGTCACTATG
AAAAAGCGAACTACTCGGAGAAGCGCTGAAGAGAGCTCAAGCTCACGAGC
ATATTCGCATCAGCCCAGCACACCTATTGAACAAGAAGCACAGCAACCAG
AGGAACCTCATGACACCCTTACCCTTGATACGACCGTCTCCGACAGTGAA
TCAGAAACATCTACCAACGCCAGTAAAGAGAACGACCCTTCCCTATCTCC
TTCCCCAGTCCGACTCGCACCACCTAGCATCCGCAAGAACGCTTTCGGGA
AACGCCCCCTTTCCGTCCTAACCATGCCCATGGACGTGGACGATCCCTTC
GCCATGGGCACAGAAGAAACAACAATAGACGGCATGTCCGCATCCGAGAA
GAACATCGCAGCAAACCACCCTAGTGACCTCCCAGAACGCGGCCACTCCC
CACAGAGAAAGTCCCCGAAGCTGTCCGTACTCGACAAAGGCATCAACTCA
TCAGGCCGGATACGCGAAGATGTCCAGATCTTCGAAGACGATCCCGATCC
TGCCGAGCTAGGCTTCATCAGGCGAGCCAGCGGCGACGGCAAGGAAAATC
CCCGAGCCTTAGCCGGATTGAAAGATACCGACCCCGCCATCCGGACGTCT
AATCCAAGCAATCCCCCAACGATCCTTGCCCCCTCAGCATCGAGATCCGT
CTCCTCCGGCTCGGGCTTATCAAAACCAATCTTTGGATCACGCAAAGTCT
CGTCGTCGAATGGCAAGAAAGCCAAACCTCGGATCGGCATTCGCAGACTC
TGAATGGTATCATCTCTACGACGTCTCGCAGCGGACCATGCAGCGTTGCA
CGAAGAACTTCCTCCCAACTATCTCTTTCCCTCCGACGATGCCTCTGCCG
GGGACGACTTGACACAGCTCACCACTCTCCTGGCCGGGCCACAGGGTACA
CCATACTCGCAGGGCCTATGGCGATTGCATCTGAAGATGCCGGAGGACTA
CCCCAAGAGCCCACCAAAGGCAACATTCAGGACAAGGATATGGCATCCAA
ATGTGGAGGAATCGACGGGTGCGGTCTGCGTGGATACACTGAAGCGGGAC
TGGAAGCCCAACTTGACCTTGAAGGACGTTTTGATTACAATCTCTTGCCT
CCTCATATATCCCAACCCAGACTCCGCACTGAATTCCGCAGCCGGCGCAC
TTCTCCAAGAGAACTACGATGCATTCGCCCGCCAAGCGAAACTAATGACC
TCCATCCACGCTCCCGTTCCATCAGAGTTAGCGTCAGCAGTATCCGAGGC
GAAAACAAGAGGCGAAGACGCCGACACAGTCATCCCCGAAGAGCAAATAC
CGTCCCGCTCACTACGACCACGGAAGGGAGCCAGAATCGCCTCAGTCACT
ATGAAAAAGCGAACTACTCGGAGAAGCGCTGAAGAGAGCTCAAGCTCACG
AGCATATTCGCATCAGCCCAGCACACCTATTGAACAAGAAGCACAGCAAC
CAGAGGAACCTCATGACACCCTTACCCTTGATACGACCGTCTCCGACAGT
GAATCAGAAACATCTACCAACGCCAGTAAAGAGAACGACCCTTCCCTATC
TCCTTCCCCAGTCCGACTCGCACCACCTAGCATCCGCAAGAACGCTTTCG
GGAAACGCCCCCTTTCCGTCCTAACCATGCCCATGGACGTGGACGATCCC
TTCGCCATGGGCACAGAAGAAACAACAATAGACGGCATGTCCGCATCCGA
GAAGAACATCGCAGCAAACCACCCTAGTGACCTCCCAGAACGCGGCCACT
CCCCACAGAGAAAGTCCCCGAAGCTGTCCGTACTCGACAAAGGCATCAAC
TCATCAGGCCGGATACGCGAAGATGTCCAGATCTTCGAAGACGATCCCGA
TCCTGCCGAGCTAGGCTTCATCAGGCGAGCCAGCGGCGACGGCAAGGAAA
ATCCCCGAGCCTTAGCCGGATTGAAAGATACCGACCCCGCCATCCGGACG
TCTAATCCAAGCAATCCCCCAACGATCCTTGCCCCCTCAGCATCGAGATC
CGTCTCCTCCGGCTCGGGCTTATCAAAACCAATCTTTGGATCACGCAAAG
TCTCGTCGTCGAATGGCAAGAAAGCCAAACCTCGGATCGGCATTCGCAGA
CTCTGAATGGTATCATCTCTACGACGTCTCGCAGCGGACCATGCAGCGTT
GCACGAAGAACTTCCTCCCAACTATCTCTTTCCCTCCGACGATGCCTCTG
CCGGGGACGACTTGACACAGCTCACCACTCTCCTGGCCGGGCCACAGGGT
ACACCATACTCGCAGGGCCTATGGCGATTGCATCTGAAGATGCCGGAGGA
CTACCCCAAGAGCCCACCAAAGGCAACATTCAGGACAAGGATATGGCATC
CAAATGTGGAGGAATCGACGGGTGCGGTCTGCGTGGATACACTGAAGCGG
GACTGGAAGCCCAACTTGACCTTGAAGGACGTTTTGATTACAATCTCTTG
CCTCCTCATATATCCCAACCCAGACTCCGCACTGAATTCCGCAGCCGGCG
CACTTCTCCAAGAGAACTACGATGCATTCGCCCGCCAAGCGAAACTAATG
ACCTCCATCCACGCTCCCGTTCCATCAGAGTTAGCGTCAGCAGTATCCGA
GGCGAAAACAAGAGGCGAAGACGCCGACACAGTCATCCCCGAAGAGCAAA
TACCGTCCCGCTCACTACGACCACGGAAGGGAGCCAGAATCGCCTCAGTC
ACTATGAAAAAGCGAACTACTCGGAGAAGCGCTGAAGAGAGCTCAAGCTC
ACGAGCATATTCGCATCAGCCCAGCACACCTATTGAACAAGAAGCACAGC
AACCAGAGGAACCTCATGACACCCTTACCCTTGATACGACCGTCTCCGAC
AGTGAATCAGAAACATCTACCAACGCCAGTAAAGAGAACGACCCTTCCCT
ATCTCCTTCCCCAGTCCGACTCGCACCACCTAGCATCCGCAAGAACGCTT
TCGGGAAACGCCCCCTTTCCGTCCTAACCATGCCCATGGACGTGGACGAT
CCCTTCGCCATGGGCACAGAAGAAACAACAATAGACGGCATGTCCGCATC
CGAGAAGAACATCGCAGCAAACCACCCTAGTGACCTCCCAGAACGCGGCC
ACTCCCCACAGAGAAAGTCCCCGAAGCTGTCCGTACTCGACAAAGGCATC
AACTCATCAGGCCGGATACGCGAAGATGTCCAGATCTTCGAAGACGATCC
CGATCCTGCCGAGCTAGGCTTCATCAGGCGAGCCAGCGGCGACGGCAAGG
AAAATCCCCGAGCCTTAGCCGGATTGAAAGATACCGACCCCGCCATCCGG
ACGTCTAATCCAAGCAATCCCCCAACGATCCTTGCCCCCTCAGCATCGAG
ATCCGTCTCCTCCGGCTCGGGCTTATCAAAACCAATCTTTGGATCACGCA
AAGTCTCGTCGTCGAATGGCAAGAAAGCCAAACCTCGGATCGGCATTCGC
AGACTCTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012081-T1.utr5p1 | KJC3_012081-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012081-T1.utr3p1 | KJC3_012081-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR023313 |
| DBxref | InterPro:IPR000608 |
| DBxref | InterPro:IPR016135 |
| DBxref | PFAM:PF00179 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:2508659..2510859 + |
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