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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:2754538..2756161- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012157-T1 ID=KJC3_012157-T1|Name=KJC3_012157-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1624bp|location=Sequence derived from alignment at ch8:2754538..2756161- (Aspergillus niger KJC3)
GGACTATGTTGATCATCGAATATGCTTCACGGGTAGCCAACCAACTCCGC
CCGGTCAGCCGAGGCTCTGGTGAACCATGTCGGCTAATGAGTAGTCAATC
GATAGACTCAAGCGCCGACATACGATCCCACTTTCACCCGTATAATTCTC
CCATGTGAAGAGTAAAGGGGCGCAATCTCAAACATAACATTCCTGCCGTT
GCACTGTACAGTGGATATACACATTGAAGCACTCAGACATCACAGCCATT
ACTGGTACATACATCCCACCCGGCGCATACCCCTCACGCAGACACCACCA
CTATCAACAACATCAGCAGCAGCAAATAAGCGCAACCGTACACCCTCCCA
CATTGTACATACACACAATGCATGACCCAACATCCAACCAAAGCCCATCC
TCCTGGGCAGAGCTCATGGCTCTCCGCCGCCTACCCAACCCACCCAGCAG
CAGTACCACCGAGCCAACCGAGCGATTCGAATCCATAGCACCACCCTACC
CACCGGGCGAAGGAACCCGCGCCTTTGGCGGACATGTCTACGCCCAATCC
GCATACGCAGCTTCTCAAACCGTAGAGAAGGGGTTCGTGATCCACGTAAG
TACCCACCATACTCACACGCAGAAAGAGAGCACAAACTAACGCCAACACC
ACCAGAGTGTAAGCGGAACATTCATCCTAGGAGGCCTCCTAGACGTTCCA
TACGAGTACACAGTGCGCCATCTGCGCGACGGAAAGATGTACTGCACGAG
GTCCGTGGACGTGCGACAAGCGAACCAGATCTGTTTCTCGTGCTTATGTT
CCTTCAAGCGGGGGGAGAAGCAGAGCGGGTTTGCGCATCAGCCTGCATCT
GTGCAGGAGCGATATGCGTCCATTATCTCTGGAAAGAGGGCGGAGGATTA
CCCCGTTAGTCCGAGCGTGGATGCAGATTGGTGGATTGAGGGGGTGAAGG
CTGGCGATTTGACGGAAAGGGAGTTCCCTGGGGTGGATGTGCGAAAGGTT
GATATGGGGACGTTCAATCAAGGGGAGGATGTGAAGAGCCATCCGGAGAG
GTATCGGCAGTTGGCGATGTATTCGATCAAGGGACTTCCGGTACTTGGGG
AGGAGGAAAGGAGGGTGAGGGAGAGGGAGGAGGCGGGGGAGTTTGATAAT
TTGTATGCATGTGCGCATATGTATGCTTGTGATAGGAACTCGTTGCTGTT
GATTCCAAGGGCGTTGGGGGAGACAACGTGGTCGTCTATGGCGAGTTTGA
TGCTTACGGTTGTGTTTCATGAGTTGGGAGAGGCATTGCGGATGCTTGAT
TGGAGTTCTGAGGAGAAGGAGGGCGTGGGGAAGAAGTGGTTCATACAGGA
GGGGTGGACTCCTAGGTCTGCGGAGAATCGGGCGGTTCATGAGAGTTGGT
TGTGGACTCCGGATGGGAAGTTGTTGGCTACGAGTTATCAGGATAGTTTG
TTGCGGTTGACGGGTTCACGGGGGAAGCTTTAACATGATTGGTGTAGACA
GCTTTTTTAGATGCATTGGGGACAATGTACACGGGTCATTCGGATACAGT
GAATTATATAGCTGATTGCAGTTGTCTATAGATTTCAAACTGAATACTCC
TAATAATGAAACCATATCTACTAG back to topCoding sequence (CDS) from alignment at ch8:2754538..2756161- >KJC3_012157-T1 ID=KJC3_012157-T1|Name=KJC3_012157-T1|organism=Aspergillus niger KJC3|type=CDS|length=2112bp|location=Sequence derived from alignment at ch8:2754538..2756161- (Aspergillus niger KJC3)
AGTGTAAGCGGAACATTCATCCTAGGAGGCCTCCTAGACGTTCCATACGA
GTACACAGTGCGCCATCTGCGCGACGGAAAGATGTACTGCACGAGGTCCG
TGGACGTGCGACAAGCGAACCAGATCTGTTTCTCGTGCTTATGTTCCTTC
AAGCGGGGGGAGAAGCAGAGCGGGTTTGCGCATCAGCCTGCATCTGTGCA
GGAGCGATATGCGTCCATTATCTCTGGAAAGAGGGCGGAGGATTACCCCG
TTAGTCCGAGCGTGGATGCAGATTGGTGGATTGAGGGGGTGAAGGCTGGC
GATTTGACGGAAAGGGAGTTCCCTGGGGTGGATGTGCGAAAGGTTGATAT
GGGGACGTTCAATCAAGGGGAGGATGTGAAGAGCCATCCGGAGAGGTATC
GGCAGTTGGCGATGTATTCGATCAAGGGACTTCCGGTACTTGGGGAGGAG
GAAAGGAGGGTGAGGGAGAGGGAGGAGGCGGGGGAGTTTGATAATTTGTA
TGCATGTGCGCATATGTATGCTTGTGATAGGAACTCGTTGCTGTTGATTC
CAAGGGCGTTGGGGGAGACAACGTGGTCGTCTATGGCGAGTTTGATGCTT
ACGGTTGTGTTTCATGAGTTGGGAGAGGCATTGCGGATGCTTGATTGGAG
TTCTGAGGAGAAGGAGGGCGTGGGGAAGAAGTGGTTCATACAGGAGGGGT
GGACTCCTAGGTCTGCGGAGAATCGGGCGGTTCATGAGAGTTGGTTGTGG
ACTCCGGATGGGAAGTTGTTGGCTACGAGTTATCAGGATAGTTTGTTGCG
GTTGACGGGTTCACGGGGGAAGCTTTAAATGCATGACCCAACATCCAACC
AAAGCCCATCCTCCTGGGCAGAGCTCATGGCTCTCCGCCGCCTACCCAAC
CCACCCAGCAGCAGTACCACCGAGCCAACCGAGCGATTCGAATCCATAGC
ACCACCCTACCCACCGGGCGAAGGAACCCGCGCCTTTGGCGGACATGTCT
ACGCCCAATCCGCATACGCAGCTTCTCAAACCGTAGAGAAGGGGTTCGTG
ATCCACAGTGTAAGCGGAACATTCATCCTAGGAGGCCTCCTAGACGTTCC
ATACGAGTACACAGTGCGCCATCTGCGCGACGGAAAGATGTACTGCACGA
GGTCCGTGGACGTGCGACAAGCGAACCAGATCTGTTTCTCGTGCTTATGT
TCCTTCAAGCGGGGGGAGAAGCAGAGCGGGTTTGCGCATCAGCCTGCATC
TGTGCAGGAGCGATATGCGTCCATTATCTCTGGAAAGAGGGCGGAGGATT
ACCCCGTTAGTCCGAGCGTGGATGCAGATTGGTGGATTGAGGGGGTGAAG
GCTGGCGATTTGACGGAAAGGGAGTTCCCTGGGGTGGATGTGCGAAAGGT
TGATATGGGGACGTTCAATCAAGGGGAGGATGTGAAGAGCCATCCGGAGA
GGTATCGGCAGTTGGCGATGTATTCGATCAAGGGACTTCCGGTACTTGGG
GAGGAGGAAAGGAGGGTGAGGGAGAGGGAGGAGGCGGGGGAGTTTGATAA
TTTGTATGCATGTGCGCATATGTATGCTTGTGATAGGAACTCGTTGCTGT
TGATTCCAAGGGCGTTGGGGGAGACAACGTGGTCGTCTATGGCGAGTTTG
ATGCTTACGGTTGTGTTTCATGAGTTGGGAGAGGCATTGCGGATGCTTGA
TTGGAGTTCTGAGGAGAAGGAGGGCGTGGGGAAGAAGTGGTTCATACAGG
AGGGGTGGACTCCTAGGTCTGCGGAGAATCGGGCGGTTCATGAGAGTTGG
TTGTGGACTCCGGATGGGAAGTTGTTGGCTACGAGTTATCAGGATAGTTT
GTTGCGGTTGACGGGTTCACGGGGGAAGCTTTAAATGCATGACCCAACAT
CCAACCAAAGCCCATCCTCCTGGGCAGAGCTCATGGCTCTCCGCCGCCTA
CCCAACCCACCCAGCAGCAGTACCACCGAGCCAACCGAGCGATTCGAATC
CATAGCACCACCCTACCCACCGGGCGAAGGAACCCGCGCCTTTGGCGGAC
ATGTCTACGCCCAATCCGCATACGCAGCTTCTCAAACCGTAGAGAAGGGG
TTCGTGATCCAC back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012157-T1.utr3p1 | KJC3_012157-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012157-T1.utr5p1 | KJC3_012157-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR029069 |
| DBxref | InterPro:IPR042171 |
| DBxref | PFAM:PF13622 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:2754538..2756161 - |
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