You are here

Home

KJC3_012172-T1, KJC3_012172-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012172-T1
Unique NameKJC3_012172-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:2787159..2788318-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012172-T1 ID=KJC3_012172-T1|Name=KJC3_012172-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1160bp|location=Sequence derived from alignment at ch8:2787159..2788318- (Aspergillus niger KJC3)
TTAACCTCCTTTTATACTCATGCAGGATCCCACTCGTTCATTCTCTCCTT
GTTCTCATCTTCCTCTTCATCCTTGAGTTCCGGGGCATTCCCGTTCTCAC
TGTGCGCTCTTGTACATAACAATAATAATCACTATCATGGCCGACCTCTC
CACCCTCCGCGAGGTCATCCTTCCCTCGGTCTTCTCCTGGAAATCCCTCG
CCATTGTGCTCGCCTTACTCAATCTCAAGAATATTCCTTTCTCGTGGCAC
GTACGTATCCACCCCTACCCCCAGCACCATCAATCAACACTAACAATAAA
AACGATAGATCCGCCTCCTAACCCACCTCCTCCTCAACCTCCGCCGCTCC
CCGACCTCCCCTCCCTTCCCTACCTGTCCTCCACCCTCCACCCTCACCAC
CAAGGAAAAGACAATCCAAACCCACCCCATCTTCTACCCGCACACGCTCA
CCACGCTCACCTCCCTCTGGGAAACCGACTACAACTTCCACAAATCAAAC
AGCACCTATTTCTCCGATCTGGACATCTCCCGAACAGCCATAGTAACGAG
AGTCTACACACCGGGTTTAGCGCTCGTGAGCTTGGAACTCGACCACGAAT
TGAGGAATGGGAAAGATGAAAATGCCAAGGTCAATGCGGGAAAGAAGGTG
TATGTCGCGCTGGGATCTACCTATACCAGCTTTAAGCGGGAGATAGGGCC
CCTGCAGAGGTATCGGGTGTTGAGTCGGATTGTGGGCTGGGATCGGAAGT
GGGTTTATGTGCTCAGTGCTTTCGTGAGTATTCCTTCTGGGAAGAAGGGG
AAGGGGAAGGGGAAGGTGTTTGCTACGGCTGTGAGCAAGTATGTGGTGAA
GAAGGGGTGGGTTACTGTTCCGCCGGAGAGGGTGTTGAGGGCGAGTGGGA
TGTTGCCGGAGAGGAGTCTTGCTGATGGGGAGAAAGATGAGGATGGGGTG
GTGGTTGAGGAGGAGGAAGAGGGGACGGTGGAGGGGATTGTGGAGGGGGT
GGGGGAGGTGTTGAGTAAGGATAAGGAGGGTGATGATGGGAAAGGGGAAG
GAGTGTCGGATTGGACGTGGGATATGATTGAAGAGGAGAGAGTGCGTGGG
ATGAAGATCGTCGAGGGATATGTGGGGTTGGATGAGAAGTTGTTGGCCGA
GTGGGAGTAG
back to top

Coding sequence (CDS) from alignment at ch8:2787159..2788318-

>KJC3_012172-T1 ID=KJC3_012172-T1|Name=KJC3_012172-T1|organism=Aspergillus niger KJC3|type=CDS|length=1932bp|location=Sequence derived from alignment at ch8:2787159..2788318- (Aspergillus niger KJC3)
ATCCGCCTCCTAACCCACCTCCTCCTCAACCTCCGCCGCTCCCCGACCTC
CCCTCCCTTCCCTACCTGTCCTCCACCCTCCACCCTCACCACCAAGGAAA
AGACAATCCAAACCCACCCCATCTTCTACCCGCACACGCTCACCACGCTC
ACCTCCCTCTGGGAAACCGACTACAACTTCCACAAATCAAACAGCACCTA
TTTCTCCGATCTGGACATCTCCCGAACAGCCATAGTAACGAGAGTCTACA
CACCGGGTTTAGCGCTCGTGAGCTTGGAACTCGACCACGAATTGAGGAAT
GGGAAAGATGAAAATGCCAAGGTCAATGCGGGAAAGAAGGTGTATGTCGC
GCTGGGATCTACCTATACCAGCTTTAAGCGGGAGATAGGGCCCCTGCAGA
GGTATCGGGTGTTGAGTCGGATTGTGGGCTGGGATCGGAAGTGGGTTTAT
GTGCTCAGTGCTTTCGTGAGTATTCCTTCTGGGAAGAAGGGGAAGGGGAA
GGGGAAGGTGTTTGCTACGGCTGTGAGCAAGTATGTGGTGAAGAAGGGGT
GGGTTACTGTTCCGCCGGAGAGGGTGTTGAGGGCGAGTGGGATGTTGCCG
GAGAGGAGTCTTGCTGATGGGGAGAAAGATGAGGATGGGGTGGTGGTTGA
GGAGGAGGAAGAGGGGACGGTGGAGGGGATTGTGGAGGGGGTGGGGGAGG
TGTTGAGTAAGGATAAGGAGGGTGATGATGGGAAAGGGGAAGGAGTGTCG
GATTGGACGTGGGATATGATTGAAGAGGAGAGAGTGCGTGGGATGAAGAT
CGTCGAGGGATATGTGGGGTTGGATGAGAAGTTGTTGGCCGAGTGGGAGT
AGATGGCCGACCTCTCCACCCTCCGCGAGGTCATCCTTCCCTCGGTCTTC
TCCTGGAAATCCCTCGCCATTGTGCTCGCCTTACTCAATCTCAAGAATAT
TCCTTTCTCGTGGCACATCCGCCTCCTAACCCACCTCCTCCTCAACCTCC
GCCGCTCCCCGACCTCCCCTCCCTTCCCTACCTGTCCTCCACCCTCCACC
CTCACCACCAAGGAAAAGACAATCCAAACCCACCCCATCTTCTACCCGCA
CACGCTCACCACGCTCACCTCCCTCTGGGAAACCGACTACAACTTCCACA
AATCAAACAGCACCTATTTCTCCGATCTGGACATCTCCCGAACAGCCATA
GTAACGAGAGTCTACACACCGGGTTTAGCGCTCGTGAGCTTGGAACTCGA
CCACGAATTGAGGAATGGGAAAGATGAAAATGCCAAGGTCAATGCGGGAA
AGAAGGTGTATGTCGCGCTGGGATCTACCTATACCAGCTTTAAGCGGGAG
ATAGGGCCCCTGCAGAGGTATCGGGTGTTGAGTCGGATTGTGGGCTGGGA
TCGGAAGTGGGTTTATGTGCTCAGTGCTTTCGTGAGTATTCCTTCTGGGA
AGAAGGGGAAGGGGAAGGGGAAGGTGTTTGCTACGGCTGTGAGCAAGTAT
GTGGTGAAGAAGGGGTGGGTTACTGTTCCGCCGGAGAGGGTGTTGAGGGC
GAGTGGGATGTTGCCGGAGAGGAGTCTTGCTGATGGGGAGAAAGATGAGG
ATGGGGTGGTGGTTGAGGAGGAGGAAGAGGGGACGGTGGAGGGGATTGTG
GAGGGGGTGGGGGAGGTGTTGAGTAAGGATAAGGAGGGTGATGATGGGAA
AGGGGAAGGAGTGTCGGATTGGACGTGGGATATGATTGAAGAGGAGAGAG
TGCGTGGGATGAAGATCGTCGAGGGATATGTGGGGTTGGATGAGAAGTTG
TTGGCCGAGTGGGAGTAGATGGCCGACCTCTCCACCCTCCGCGAGGTCAT
CCTTCCCTCGGTCTTCTCCTGGAAATCCCTCGCCATTGTGCTCGCCTTAC
TCAATCTCAAGAATATTCCTTTCTCGTGGCAC
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_012172KJC3_012172Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012172-T1KJC3_012172-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012172-T1.cdsKJC3_012172-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012172-T1.exon2KJC3_012172-T1.exon2Aspergillus niger KJC3exon
KJC3_012172-T1.exon1KJC3_012172-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012172-T1.utr5p1KJC3_012172-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR029069
DBxrefPFAM:PF13279
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:2787159..2788318 -
Powered by Drupal