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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:2955323..2957808+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012229-T1 ID=KJC3_012229-T1|Name=KJC3_012229-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2486bp|location=Sequence derived from alignment at ch8:2955323..2957808+ (Aspergillus niger KJC3)
CTTTATCCACTCCCGGACCCTCCATTCCTACTGGCGTGGGCTGCATGGAT
TATATTGCCATTTGATACTCGTCTACCGGAGCACTGCACCCTCGTTCCTC
CATCATGTTCAAGAAGAAGCCCACGGTACGTTACCCCTCCCCCGCACCAC
TCTGGGATCGGTCACAACACAGCAAGGTCAATCGTGCCTTTAGAGCTCAT
TACTCACGCTAGCCAAACGCAGATCAAGAACCTTTCTCCCCTGCGGTCTT
CCGACCGTCGGAAGATTGCCGATCAGATAATCAGAGATTACAAGATCGAG
GTCCCGCAAAGTGCGCCAGTTGAAACCAGCGGCGACGACTCAGCTCCAGG
CGCATCCAACCCAACGGCGCCAAACCTCACCTCCATCCGAAATACCTTAC
TTCCCGAGGATTGCTTGACAGCACGCTTTACTACGACCGCCGGGCCCCAG
CTTCGCGAAGTACAAGGGACAGTGTATGTTGGAACACATCCGGGGGCCGA
TGAAAGGATCCTGTGGTTCAGAGTCGACCATGGGCCCGGCGCCGATGGAC
GCCTCTACCCTACGGTATATACACTTTGGCACAACCCAGATCTGGTGCCA
CTGCTCCATACTCCACAAATGGTCATGCAGAAACTGCACGGAGGAGCAGA
CCTGATGACTCCGGGTCTGGCCAATGACCCGCCTTTCGACGAGCGTGCCG
TCAAGGGCGCAGTGGTTGCTGTCGCTAGTCTGAACAGGCATACGGTACCA
CTGTTTGTGGGCGTGTGTGAGATTGACATCTCTGCACTTGGAGAGGTTCA
GGGTACGAAGGGACATGCCGTTCGGGGTCTGCACTGGGAAGGCGATGAGT
TGTGGGCTTGGAGCTCGTCTTCCAAGCCGGGTCAGCCCGCTCCAGAATAT
CTAGATGGGTGGGATGATGAACTGGAAGAGGACGAAGATGTAGGAGAGAT
TGAAGAGGGCGTGCAGGGCCTAGCAGTAGGAGGTGACAATGCAGTTCAAG
CAACTGAAGGCGAGGAAGCATCAGATGAAGCGCCTGATGTCCCGCAGGAG
GAGGCACCTGAAGTTGAAGAGAAGGAGCCCACAACCAAAGGTGAGTCTCG
CTCACTACAACATGAGTGTAGCTATACTGACCGCTTGAAGAAATTGACGA
GGCTTTCGAAAAGGCCTTCCTCTACTCCCTCTACAAGCTCAAGCAAGATA
ATCCATCTGCTACCAACCACGGTCTATCTCTACCCGTCCAACCATCTGCT
CTGATATCAAACATGATCACACCCCACCTGCCCATATACACTGCCAAACA
AGCCCAATACTATCAAATCAAGAAGACCAGCTGGAAAAATGTGAAAAAGT
TCATCAAATATCTGGACAAGCAGCGCCTGGTCAAGTCCAAAGACCGCAAC
GGCCAAGAGACCGTCATCCTCGACGTGGACTTCAACGACCATCGTGTTGA
ACAGTTCATCCCTTACAGACTCCCATCCAAAAACACCGTTGAGAACGCAG
GAAAGCCTGCCACTCAGGCAAATAACGCCAAAACCGCATCTACACAGAGC
GGTGACCCCTCAGTCGGCCAAACCCTGACCGTGCAGACTGTATATCGCCC
AACCAACAAACTCACGCCGACCATCTTCCCTGCTCTATCCAGCACCCACC
CCAGCAACTACTACAAGTACACCGACATCTCCACTCACCTCGACCAATAC
ATCCAATCTCAAAATCCCCCGCTCGCCGACCCCAAAAACAAACGCATTAT
CACCCTCAACCCCTACCTCGCCAATACCATCTTCACCTCTTCCTCCGCCG
ATGACAAAAGCACTCTCGCCCGCGGCAAGACCACCCGCGACGGCCTCCTC
AAGCGTCTCATCGATGACCACTCCCTCATGACAGCCCACTACGTCATCCT
ACGGCCCGGTCAAACCCTCTCCGACGTGAAGCCCAAAGCAGGCGCCGCCC
CCAAGGTCAACGTAATTCTCGAACGCCGCACCGGCTCCAAGACCGTCACC
AAGGTCTGGAACCTCGAAGTGTTCGGCATCATCCCTAGTCTTCTGGCCGA
AGAGCTGCAGAAGAAGTGTGCTAGCAGCACCAGCGTGACGCAGGCTACTG
GCGCGCCGAAGGGCGTTATGGAGGTGCTTGTCCAGGGAGACCAGCGACGC
GCGTTAGAGACGGCGTTGGTGAGACGTGGGTTGAGGACGCAGTGGATTGA
TGTTGTGGATAAGACGAAGAAGAAGAAATAAGCAATCGGGATAAAAAGGG
CTAAAAGAGTGATGGTTTTACATATGTTACCGTTCTATACGTGCAGTAGT
TGATGAATATATGTGCAAACCTGGCTATTGCCCTCGATATCTCTACTACT
TGGAAGGAATTCAAGTAATGTAGCTCTGGGTATCACTAGTTGTGCACTGC
ATTAGTATAGGGTGCTGCTGCTGCTAAGCATTGCAATTCCATCATATAAC
CAGTCGCAATATTGCTTACCTAGTTCTGTATCTAGC back to topCoding sequence (CDS) from alignment at ch8:2955323..2957808+ >KJC3_012229-T1 ID=KJC3_012229-T1|Name=KJC3_012229-T1|organism=Aspergillus niger KJC3|type=CDS|length=5940bp|location=Sequence derived from alignment at ch8:2955323..2957808+ (Aspergillus niger KJC3)
ATGTTCAAGAAGAAGCCCACGATCAAGAACCTTTCTCCCCTGCGGTCTTC
CGACCGTCGGAAGATTGCCGATCAGATAATCAGAGATTACAAGATCGAGG
TCCCGCAAAGTGCGCCAGTTGAAACCAGCGGCGACGACTCAGCTCCAGGC
GCATCCAACCCAACGGCGCCAAACCTCACCTCCATCCGAAATACCTTACT
TCCCGAGGATTGCTTGACAGCACGCTTTACTACGACCGCCGGGCCCCAGC
TTCGCGAAGTACAAGGGACAGTGTATGTTGGAACACATCCGGGGGCCGAT
GAAAGGATCCTGTGGTTCAGAGTCGACCATGGGCCCGGCGCCGATGGACG
CCTCTACCCTACGGTATATACACTTTGGCACAACCCAGATCTGGTGCCAC
TGCTCCATACTCCACAAATGGTCATGCAGAAACTGCACGGAGGAGCAGAC
CTGATGACTCCGGGTCTGGCCAATGACCCGCCTTTCGACGAGCGTGCCGT
CAAGGGCGCAGTGGTTGCTGTCGCTAGTCTGAACAGGCATACGGTACCAC
TGTTTGTGGGCGTGTGTGAGATTGACATCTCTGCACTTGGAGAGGTTCAG
GGTACGAAGGGACATGCCGTTCGGGGTCTGCACTGGGAAGGCGATGAGTT
GTGGGCTTGGAGCTCGTCTTCCAAGCCGGGTCAGCCCGCTCCAGAATATC
TAGATGGGTGGGATGATGAACTGGAAGAGGACGAAGATGTAGGAGAGATT
GAAGAGGGCGTGCAGGGCCTAGCAGTAGGAGGTGACAATGCAGTTCAAGC
AACTGAAGGCGAGGAAGCATCAGATGAAGCGCCTGATGTCCCGCAGGAGG
AGGCACCTGAAGTTGAAGAGAAGGAGCCCACAACCAAAGAAATTGACGAG
GCTTTCGAAAAGGCCTTCCTCTACTCCCTCTACAAGCTCAAGCAAGATAA
TCCATCTGCTACCAACCACGGTCTATCTCTACCCGTCCAACCATCTGCTC
TGATATCAAACATGATCACACCCCACCTGCCCATATACACTGCCAAACAA
GCCCAATACTATCAAATCAAGAAGACCAGCTGGAAAAATGTGAAAAAGTT
CATCAAATATCTGGACAAGCAGCGCCTGGTCAAGTCCAAAGACCGCAACG
GCCAAGAGACCGTCATCCTCGACGTGGACTTCAACGACCATCGTGTTGAA
CAGTTCATCCCTTACAGACTCCCATCCAAAAACACCGTTGAGAACGCAGG
AAAGCCTGCCACTCAGGCAAATAACGCCAAAACCGCATCTACACAGAGCG
GTGACCCCTCAGTCGGCCAAACCCTGACCGTGCAGACTGTATATCGCCCA
ACCAACAAACTCACGCCGACCATCTTCCCTGCTCTATCCAGCACCCACCC
CAGCAACTACTACAAGTACACCGACATCTCCACTCACCTCGACCAATACA
TCCAATCTCAAAATCCCCCGCTCGCCGACCCCAAAAACAAACGCATTATC
ACCCTCAACCCCTACCTCGCCAATACCATCTTCACCTCTTCCTCCGCCGA
TGACAAAAGCACTCTCGCCCGCGGCAAGACCACCCGCGACGGCCTCCTCA
AGCGTCTCATCGATGACCACTCCCTCATGACAGCCCACTACGTCATCCTA
CGGCCCGGTCAAACCCTCTCCGACGTGAAGCCCAAAGCAGGCGCCGCCCC
CAAGGTCAACGTAATTCTCGAACGCCGCACCGGCTCCAAGACCGTCACCA
AGGTCTGGAACCTCGAAGTGTTCGGCATCATCCCTAGTCTTCTGGCCGAA
GAGCTGCAGAAGAAGTGTGCTAGCAGCACCAGCGTGACGCAGGCTACTGG
CGCGCCGAAGGGCGTTATGGAGGTGCTTGTCCAGGGAGACCAGCGACGCG
CGTTAGAGACGGCGTTGGTGAGACGTGGGTTGAGGACGCAGTGGATTGAT
GTTGTGGATAAGACGAAGAAGAAGAAATAAATGTTCAAGAAGAAGCCCAC
GATCAAGAACCTTTCTCCCCTGCGGTCTTCCGACCGTCGGAAGATTGCCG
ATCAGATAATCAGAGATTACAAGATCGAGGTCCCGCAAAGTGCGCCAGTT
GAAACCAGCGGCGACGACTCAGCTCCAGGCGCATCCAACCCAACGGCGCC
AAACCTCACCTCCATCCGAAATACCTTACTTCCCGAGGATTGCTTGACAG
CACGCTTTACTACGACCGCCGGGCCCCAGCTTCGCGAAGTACAAGGGACA
GTGTATGTTGGAACACATCCGGGGGCCGATGAAAGGATCCTGTGGTTCAG
AGTCGACCATGGGCCCGGCGCCGATGGACGCCTCTACCCTACGGTATATA
CACTTTGGCACAACCCAGATCTGGTGCCACTGCTCCATACTCCACAAATG
GTCATGCAGAAACTGCACGGAGGAGCAGACCTGATGACTCCGGGTCTGGC
CAATGACCCGCCTTTCGACGAGCGTGCCGTCAAGGGCGCAGTGGTTGCTG
TCGCTAGTCTGAACAGGCATACGGTACCACTGTTTGTGGGCGTGTGTGAG
ATTGACATCTCTGCACTTGGAGAGGTTCAGGGTACGAAGGGACATGCCGT
TCGGGGTCTGCACTGGGAAGGCGATGAGTTGTGGGCTTGGAGCTCGTCTT
CCAAGCCGGGTCAGCCCGCTCCAGAATATCTAGATGGGTGGGATGATGAA
CTGGAAGAGGACGAAGATGTAGGAGAGATTGAAGAGGGCGTGCAGGGCCT
AGCAGTAGGAGGTGACAATGCAGTTCAAGCAACTGAAGGCGAGGAAGCAT
CAGATGAAGCGCCTGATGTCCCGCAGGAGGAGGCACCTGAAGTTGAAGAG
AAGGAGCCCACAACCAAAGAAATTGACGAGGCTTTCGAAAAGGCCTTCCT
CTACTCCCTCTACAAGCTCAAGCAAGATAATCCATCTGCTACCAACCACG
GTCTATCTCTACCCGTCCAACCATCTGCTCTGATATCAAACATGATCACA
CCCCACCTGCCCATATACACTGCCAAACAAGCCCAATACTATCAAATCAA
GAAGACCAGCTGGAAAAATGTGAAAAAGTTCATCAAATATCTGGACAAGC
AGCGCCTGGTCAAGTCCAAAGACCGCAACGGCCAAGAGACCGTCATCCTC
GACGTGGACTTCAACGACCATCGTGTTGAACAGTTCATCCCTTACAGACT
CCCATCCAAAAACACCGTTGAGAACGCAGGAAAGCCTGCCACTCAGGCAA
ATAACGCCAAAACCGCATCTACACAGAGCGGTGACCCCTCAGTCGGCCAA
ACCCTGACCGTGCAGACTGTATATCGCCCAACCAACAAACTCACGCCGAC
CATCTTCCCTGCTCTATCCAGCACCCACCCCAGCAACTACTACAAGTACA
CCGACATCTCCACTCACCTCGACCAATACATCCAATCTCAAAATCCCCCG
CTCGCCGACCCCAAAAACAAACGCATTATCACCCTCAACCCCTACCTCGC
CAATACCATCTTCACCTCTTCCTCCGCCGATGACAAAAGCACTCTCGCCC
GCGGCAAGACCACCCGCGACGGCCTCCTCAAGCGTCTCATCGATGACCAC
TCCCTCATGACAGCCCACTACGTCATCCTACGGCCCGGTCAAACCCTCTC
CGACGTGAAGCCCAAAGCAGGCGCCGCCCCCAAGGTCAACGTAATTCTCG
AACGCCGCACCGGCTCCAAGACCGTCACCAAGGTCTGGAACCTCGAAGTG
TTCGGCATCATCCCTAGTCTTCTGGCCGAAGAGCTGCAGAAGAAGTGTGC
TAGCAGCACCAGCGTGACGCAGGCTACTGGCGCGCCGAAGGGCGTTATGG
AGGTGCTTGTCCAGGGAGACCAGCGACGCGCGTTAGAGACGGCGTTGGTG
AGACGTGGGTTGAGGACGCAGTGGATTGATGTTGTGGATAAGACGAAGAA
GAAGAAATAAATGTTCAAGAAGAAGCCCACGATCAAGAACCTTTCTCCCC
TGCGGTCTTCCGACCGTCGGAAGATTGCCGATCAGATAATCAGAGATTAC
AAGATCGAGGTCCCGCAAAGTGCGCCAGTTGAAACCAGCGGCGACGACTC
AGCTCCAGGCGCATCCAACCCAACGGCGCCAAACCTCACCTCCATCCGAA
ATACCTTACTTCCCGAGGATTGCTTGACAGCACGCTTTACTACGACCGCC
GGGCCCCAGCTTCGCGAAGTACAAGGGACAGTGTATGTTGGAACACATCC
GGGGGCCGATGAAAGGATCCTGTGGTTCAGAGTCGACCATGGGCCCGGCG
CCGATGGACGCCTCTACCCTACGGTATATACACTTTGGCACAACCCAGAT
CTGGTGCCACTGCTCCATACTCCACAAATGGTCATGCAGAAACTGCACGG
AGGAGCAGACCTGATGACTCCGGGTCTGGCCAATGACCCGCCTTTCGACG
AGCGTGCCGTCAAGGGCGCAGTGGTTGCTGTCGCTAGTCTGAACAGGCAT
ACGGTACCACTGTTTGTGGGCGTGTGTGAGATTGACATCTCTGCACTTGG
AGAGGTTCAGGGTACGAAGGGACATGCCGTTCGGGGTCTGCACTGGGAAG
GCGATGAGTTGTGGGCTTGGAGCTCGTCTTCCAAGCCGGGTCAGCCCGCT
CCAGAATATCTAGATGGGTGGGATGATGAACTGGAAGAGGACGAAGATGT
AGGAGAGATTGAAGAGGGCGTGCAGGGCCTAGCAGTAGGAGGTGACAATG
CAGTTCAAGCAACTGAAGGCGAGGAAGCATCAGATGAAGCGCCTGATGTC
CCGCAGGAGGAGGCACCTGAAGTTGAAGAGAAGGAGCCCACAACCAAAGA
AATTGACGAGGCTTTCGAAAAGGCCTTCCTCTACTCCCTCTACAAGCTCA
AGCAAGATAATCCATCTGCTACCAACCACGGTCTATCTCTACCCGTCCAA
CCATCTGCTCTGATATCAAACATGATCACACCCCACCTGCCCATATACAC
TGCCAAACAAGCCCAATACTATCAAATCAAGAAGACCAGCTGGAAAAATG
TGAAAAAGTTCATCAAATATCTGGACAAGCAGCGCCTGGTCAAGTCCAAA
GACCGCAACGGCCAAGAGACCGTCATCCTCGACGTGGACTTCAACGACCA
TCGTGTTGAACAGTTCATCCCTTACAGACTCCCATCCAAAAACACCGTTG
AGAACGCAGGAAAGCCTGCCACTCAGGCAAATAACGCCAAAACCGCATCT
ACACAGAGCGGTGACCCCTCAGTCGGCCAAACCCTGACCGTGCAGACTGT
ATATCGCCCAACCAACAAACTCACGCCGACCATCTTCCCTGCTCTATCCA
GCACCCACCCCAGCAACTACTACAAGTACACCGACATCTCCACTCACCTC
GACCAATACATCCAATCTCAAAATCCCCCGCTCGCCGACCCCAAAAACAA
ACGCATTATCACCCTCAACCCCTACCTCGCCAATACCATCTTCACCTCTT
CCTCCGCCGATGACAAAAGCACTCTCGCCCGCGGCAAGACCACCCGCGAC
GGCCTCCTCAAGCGTCTCATCGATGACCACTCCCTCATGACAGCCCACTA
CGTCATCCTACGGCCCGGTCAAACCCTCTCCGACGTGAAGCCCAAAGCAG
GCGCCGCCCCCAAGGTCAACGTAATTCTCGAACGCCGCACCGGCTCCAAG
ACCGTCACCAAGGTCTGGAACCTCGAAGTGTTCGGCATCATCCCTAGTCT
TCTGGCCGAAGAGCTGCAGAAGAAGTGTGCTAGCAGCACCAGCGTGACGC
AGGCTACTGGCGCGCCGAAGGGCGTTATGGAGGTGCTTGTCCAGGGAGAC
CAGCGACGCGCGTTAGAGACGGCGTTGGTGAGACGTGGGTTGAGGACGCA
GTGGATTGATGTTGTGGATAAGACGAAGAAGAAGAAATAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006413 | translational initiation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003743 | translation initiation factor activity |
| GO:0003723 | RNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012229-T1.utr5p1 | KJC3_012229-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012229-T1.utr3p1 | KJC3_012229-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036885 |
| DBxref | InterPro:IPR015947 |
| DBxref | InterPro:IPR036877 |
| DBxref | InterPro:IPR039759 |
| DBxref | InterPro:IPR001950 |
| DBxref | InterPro:IPR036974 |
| DBxref | PFAM:PF01253 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:2955323..2957808 + |
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