You are here

Home

KJC3_012230-T1, KJC3_012230-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012230-T1
Unique NameKJC3_012230-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:2957859..2959849-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012230-T1 ID=KJC3_012230-T1|Name=KJC3_012230-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1991bp|location=Sequence derived from alignment at ch8:2957859..2959849- (Aspergillus niger KJC3)
GAAAATTTCCCCCGCCGCGCATTAATTGGCCTGGCCATTTTCCCTCTCGC
ATCTGAAGCTCGTCTTTAAATTACTTGCAGGTGTCTTTTCCCGGGCGATT
CCTCTTTTCCGCTTATATTTCTATCTTGCGCTCGCGCATTCTAGGTAAGA
TACAAGTGCCCTGCTTGCCTCCTCCATTCTATTCTCCGCATCGCCGTCGC
GCGGTTCTCCGTCCATCATTGGCCAAATCGGTCCGTATCATGGTTCTGAC
GCGGGATTGCACCCTGCCCTCATCTTGGACTTATTGCCTGTGGCACTCTG
CTTTTGACGATATGTAGGAATTACTGACTGATATATTTCAACTCTAGTAT
AGACCCTATAAATCAATTTCTTTCCTTATCCCCTTATCCTCCTACAACAC
AGCTCCGTGACCATGTCCGAAGAGCAAAAGCCCGTCGCCCAGCCCAACGC
TGAGGCTGAGAAGGATGTCCAGAACGTCCTCGCCGAGCTGAAGGGCGAGA
ACGAAGCCCCCGCCAACGGTACTGAGAAGAAGGAGGCCGAAGATGCCGAG
GAAGCCCGCATTGTCGAGGCCGCCGCCAAGCTGGGCGAGAAGTCTGAGAA
GGCTGAAGAGCAGAAGGAATCCAAGACACAGGAATCTCGCAACGACAACC
GGGGTCGCGAGGGCCGCTTCAACCGCCGCAACAACGCCAAGTTTGACCCC
TCCACGCAGCAGGTGACGGATGACCCGGTCGAGATTCGCAAGCAGGTTGA
GTTCTACTTCTCTGACTCCAACCTGCCCATGGACAAGTTCCTGTTCTCCA
AGGTTGGTGGCAGCGCCAACCGTTCCGTTCCTCTGGAGCTTCTGCACTCC
TTCAAGCGCATGCGCCGCTTCCAGCCCTTCAGCGCCGTGGTTGAAGCCCT
CAAGTCGTCCGAGACGCTTGAGCTGACCGATAACGATACCTCCGTGCGCC
GGAAGACGCCCCTTCCGGAGTCCGTGTCGCAGACTCACGACCACAACGTG
GTCAAGGTGTTCGAGGACCAGGCCATGAGCCGTAGCATCTACGCCAAGGG
TTTCGGCGACGAGGAGCCGACTACCCAGCTTGACATCGAGGCTTTCTTCG
CCCCCTACGGACCCGTCAACGCCATCCGTCTGCGTCGTGCCTACGACAAG
ACCTTCAAGGGCAGTGTTTTCGTTGAGTTCGAGTCGGAGGAGAAGCAGAA
GGCTTTCCTGGCCCTGGACCCCAAGCCCCAGTGGAAGGGACAGGACCTGC
TCATCAAGAGCAAGAAGGATTACTGCGACGAGAAGGTGCGCGAAATTGAG
GCTGGCCGCGTGAAGCCCAGCGGCTCTCGTGGACGCGGTGGCTTCCAGCG
CGGTCGCGGCCGTGGCCGTGGTGGAAACCGTGGTCGTGACAACCGCGACT
GGAGGGAGCGCCGCGCGGCTGACCAGAAGAACGGCTTCAACGACAAGAAG
AGTGAGCCCAAGGAGGAGCGCACTGAGGTTCAGAAGGATGCTCGGTATGT
ATTTACCTCTGCTTCCCCCCTATCACCACCTTCACTACCCCATTTCTCAA
AGCAAATGTATACTAACAAAACACCCCAGCGGTGTCCCCATTGTTCAGAG
CACCGCCGAAACCGGCCAGAAGCGTGCCGCCGAAGACGAGGCGAACGGCG
ACCACCCGGCCAAGAAGGTGGACGCCAAGGAGTAAACGAAATAACGTCAT
CTAAATCAAAAAAAGAAAAGTTGCAATTCTCATCAAGGACAACAGTTGCT
TATTTATTCGTTGCTTCGAGAGAAAATGGGAATAAGGGATGGGATACAAA
AAGCATGACTTTGGCTCGAATTACTACCTCCGGACTTTGAAGACCATAGT
ACCATAATGGCGTTGTATAATTTCATTATTTTTTTTTCTCCTTTTAAGGG
TTATTCTTATTGATCGGTTTTCTTTCTTCGGTGAATATTACATTCTAGAT
ACTCGAAATAGAATGTTCTGGAATCCATCTTTACCATTTAG
back to top

Coding sequence (CDS) from alignment at ch8:2957859..2959849-

>KJC3_012230-T1 ID=KJC3_012230-T1|Name=KJC3_012230-T1|organism=Aspergillus niger KJC3|type=CDS|length=2376bp|location=Sequence derived from alignment at ch8:2957859..2959849- (Aspergillus niger KJC3)
CGGTGTCCCCATTGTTCAGAGCACCGCCGAAACCGGCCAGAAGCGTGCCG
CCGAAGACGAGGCGAACGGCGACCACCCGGCCAAGAAGGTGGACGCCAAG
GAGTAAATGTCCGAAGAGCAAAAGCCCGTCGCCCAGCCCAACGCTGAGGC
TGAGAAGGATGTCCAGAACGTCCTCGCCGAGCTGAAGGGCGAGAACGAAG
CCCCCGCCAACGGTACTGAGAAGAAGGAGGCCGAAGATGCCGAGGAAGCC
CGCATTGTCGAGGCCGCCGCCAAGCTGGGCGAGAAGTCTGAGAAGGCTGA
AGAGCAGAAGGAATCCAAGACACAGGAATCTCGCAACGACAACCGGGGTC
GCGAGGGCCGCTTCAACCGCCGCAACAACGCCAAGTTTGACCCCTCCACG
CAGCAGGTGACGGATGACCCGGTCGAGATTCGCAAGCAGGTTGAGTTCTA
CTTCTCTGACTCCAACCTGCCCATGGACAAGTTCCTGTTCTCCAAGGTTG
GTGGCAGCGCCAACCGTTCCGTTCCTCTGGAGCTTCTGCACTCCTTCAAG
CGCATGCGCCGCTTCCAGCCCTTCAGCGCCGTGGTTGAAGCCCTCAAGTC
GTCCGAGACGCTTGAGCTGACCGATAACGATACCTCCGTGCGCCGGAAGA
CGCCCCTTCCGGAGTCCGTGTCGCAGACTCACGACCACAACGTGGTCAAG
GTGTTCGAGGACCAGGCCATGAGCCGTAGCATCTACGCCAAGGGTTTCGG
CGACGAGGAGCCGACTACCCAGCTTGACATCGAGGCTTTCTTCGCCCCCT
ACGGACCCGTCAACGCCATCCGTCTGCGTCGTGCCTACGACAAGACCTTC
AAGGGCAGTGTTTTCGTTGAGTTCGAGTCGGAGGAGAAGCAGAAGGCTTT
CCTGGCCCTGGACCCCAAGCCCCAGTGGAAGGGACAGGACCTGCTCATCA
AGAGCAAGAAGGATTACTGCGACGAGAAGGTGCGCGAAATTGAGGCTGGC
CGCGTGAAGCCCAGCGGCTCTCGTGGACGCGGTGGCTTCCAGCGCGGTCG
CGGCCGTGGCCGTGGTGGAAACCGTGGTCGTGACAACCGCGACTGGAGGG
AGCGCCGCGCGGCTGACCAGAAGAACGGCTTCAACGACAAGAAGAGTGAG
CCCAAGGAGGAGCGCACTGAGGTTCAGAAGGATGCTCGCGGTGTCCCCAT
TGTTCAGAGCACCGCCGAAACCGGCCAGAAGCGTGCCGCCGAAGACGAGG
CGAACGGCGACCACCCGGCCAAGAAGGTGGACGCCAAGGAGTAAATGTCC
GAAGAGCAAAAGCCCGTCGCCCAGCCCAACGCTGAGGCTGAGAAGGATGT
CCAGAACGTCCTCGCCGAGCTGAAGGGCGAGAACGAAGCCCCCGCCAACG
GTACTGAGAAGAAGGAGGCCGAAGATGCCGAGGAAGCCCGCATTGTCGAG
GCCGCCGCCAAGCTGGGCGAGAAGTCTGAGAAGGCTGAAGAGCAGAAGGA
ATCCAAGACACAGGAATCTCGCAACGACAACCGGGGTCGCGAGGGCCGCT
TCAACCGCCGCAACAACGCCAAGTTTGACCCCTCCACGCAGCAGGTGACG
GATGACCCGGTCGAGATTCGCAAGCAGGTTGAGTTCTACTTCTCTGACTC
CAACCTGCCCATGGACAAGTTCCTGTTCTCCAAGGTTGGTGGCAGCGCCA
ACCGTTCCGTTCCTCTGGAGCTTCTGCACTCCTTCAAGCGCATGCGCCGC
TTCCAGCCCTTCAGCGCCGTGGTTGAAGCCCTCAAGTCGTCCGAGACGCT
TGAGCTGACCGATAACGATACCTCCGTGCGCCGGAAGACGCCCCTTCCGG
AGTCCGTGTCGCAGACTCACGACCACAACGTGGTCAAGGTGTTCGAGGAC
CAGGCCATGAGCCGTAGCATCTACGCCAAGGGTTTCGGCGACGAGGAGCC
GACTACCCAGCTTGACATCGAGGCTTTCTTCGCCCCCTACGGACCCGTCA
ACGCCATCCGTCTGCGTCGTGCCTACGACAAGACCTTCAAGGGCAGTGTT
TTCGTTGAGTTCGAGTCGGAGGAGAAGCAGAAGGCTTTCCTGGCCCTGGA
CCCCAAGCCCCAGTGGAAGGGACAGGACCTGCTCATCAAGAGCAAGAAGG
ATTACTGCGACGAGAAGGTGCGCGAAATTGAGGCTGGCCGCGTGAAGCCC
AGCGGCTCTCGTGGACGCGGTGGCTTCCAGCGCGGTCGCGGCCGTGGCCG
TGGTGGAAACCGTGGTCGTGACAACCGCGACTGGAGGGAGCGCCGCGCGG
CTGACCAGAAGAACGGCTTCAACGACAAGAAGAGTGAGCCCAAGGAGGAG
CGCACTGAGGTTCAGAAGGATGCTCG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:1990904ribonucleoprotein complex
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_012230KJC3_012230Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012230-T1KJC3_012230-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012230-T1.cdsKJC3_012230-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012230-T1.utr3p1KJC3_012230-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012230-T1.exon2KJC3_012230-T1.exon2Aspergillus niger KJC3exon
KJC3_012230-T1.exon1KJC3_012230-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012230-T1.utr5p1KJC3_012230-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR035979
DBxrefInterPro:IPR036390
DBxrefInterPro:IPR036388
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR006630
DBxrefInterPro:IPR000504
DBxrefInterPro:IPR002344
DBxrefPFAM:PF00076
DBxrefPFAM:PF05383
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:2957859..2959849 -
Powered by Drupal