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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:2970203..2971438+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012235-T1 ID=KJC3_012235-T1|Name=KJC3_012235-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1236bp|location=Sequence derived from alignment at ch8:2970203..2971438+ (Aspergillus niger KJC3)
GTCACCGGCCTTGGTATACTTCCTGCTGGATTCACTCGGCGACACCATAT
CTACAATACTATTTTCCTTCTTGGGAAGCTGGAAACAAGATAAATATCTT
CTCAAGATGTCTCCCGTGGGGAGTTTCTTTCTCTCTCCAATTACCAGAAA
CTCCTAACATACTCTTACTCTTTTGCAATTCGCACCATGTCCACAGATCG
AAAGACCGTCCTCATCACGGGCTGCTCCGATGGAGGCATCGGAGCTGCAC
TGGCTGAGACTTTCCACGATCACCGTTATCATGTCTTTGCCACTGTGCGC
ACGCCATCAAAGGCCCCCAAGTCTCTCATCAACTCTCCCAATGCCACCGT
CCTCACCCTGGATGTGCTGGACTCGACGTCTATCTCCGATGCAGTGGAAA
AGGTGACGAAAGCCACTGGCGGCAAGCTTGACGTTCTAGTAAACAATAGT
GGAGGCAGCATTATCCTCCCCGCTTTGGATACTTCAATCGAAGACGGCAA
AAAGTTATTCGACTTGAATTTCTGGGCGCCCTTAGCTGTGACGCAGGCCT
TTGCTCCTTTACTGGTCAGGTCCAAAGGTTGTCTTGTAAACAATACATCA
GTGAATGGAGCTCTTCCATTTGTATTTATGAGTGAGCCCAATCGTTCTCC
AACTACAGTCACAGAGCCTGGCATCCTTTGACTAATATATCTCACTTAAG
GCATGTACAATTCCTCAAAAGCGGCCTTTATGAGCGCCAGCGAGACTTGG
CGTATGGAGCTGGCTCCGCTGGGTGTTCGGACCATTACTCTCATGACTGG
TGGTGTGAAGACTAAGTTCTTTGACAACTACGTTCCTCGCCAAGTCCCCG
AGAACTCCTATTACATTGGAGCAAAGGATGCTATTCAGAAAATGGGAGAT
GGGAGCTTGCAGGATAGCGGCGTCGATAGGTACTCATATGCCTCTAAGGT
GTTTCAGGCAGTCGAGAGGAAGGAGTCAGGAAAGCTGTGGGTTGGTGGAG
GCGCTGTTCCTGCGAAATGGGCACTGTGGTTATTGCCGCAATGGGGTGTG
GTAGGTATCCTTCGCTTGTTTGCTGCAGAGTACCTATGTGGCATTGATGA
AGATGATGTACTAAATGCTTTGGTAGGATTTGATGATGAGAAAAATGTTT
CCTGTGTTTGGAACAATCGAAGCTGGGGTGAAGAAAGACGCTTAAAGTCG
TATAATAGCTGTGCAACCGTCATGGCTGCCTAGCTG back to topCoding sequence (CDS) from alignment at ch8:2970203..2971438+ >KJC3_012235-T1 ID=KJC3_012235-T1|Name=KJC3_012235-T1|organism=Aspergillus niger KJC3|type=CDS|length=2592bp|location=Sequence derived from alignment at ch8:2970203..2971438+ (Aspergillus niger KJC3)
ATGTCCACAGATCGAAAGACCGTCCTCATCACGGGCTGCTCCGATGGAGG
CATCGGAGCTGCACTGGCTGAGACTTTCCACGATCACCGTTATCATGTCT
TTGCCACTGTGCGCACGCCATCAAAGGCCCCCAAGTCTCTCATCAACTCT
CCCAATGCCACCGTCCTCACCCTGGATGTGCTGGACTCGACGTCTATCTC
CGATGCAGTGGAAAAGGTGACGAAAGCCACTGGCGGCAAGCTTGACGTTC
TAGTAAACAATAGTGGAGGCAGCATTATCCTCCCCGCTTTGGATACTTCA
ATCGAAGACGGCAAAAAGTTATTCGACTTGAATTTCTGGGCGCCCTTAGC
TGTGACGCAGGCCTTTGCTCCTTTACTGGTCAGGTCCAAAGGTTGTCTTG
TAAACAATACATCAGTGAATGGAGCTCTTCCATTTGTATTTATGAGCATG
TACAATTCCTCAAAAGCGGCCTTTATGAGCGCCAGCGAGACTTGGCGTAT
GGAGCTGGCTCCGCTGGGTGTTCGGACCATTACTCTCATGACTGGTGGTG
TGAAGACTAAGTTCTTTGACAACTACGTTCCTCGCCAAGTCCCCGAGAAC
TCCTATTACATTGGAGCAAAGGATGCTATTCAGAAAATGGGAGATGGGAG
CTTGCAGGATAGCGGCGTCGATAGGTACTCATATGCCTCTAAGGTGTTTC
AGGCAGTCGAGAGGAAGGAGTCAGGAAAGCTGTGGGTTGGTGGAGGCGCT
GTTCCTGCGAAATGGGCACTGTGGTTATTGCCGCAATGGGGTGTGGATTT
GATGATGAGAAAAATGTTTCCTGTGTTTGGAACAATCGAAGCTGGGGTGA
AGAAAGACGCTTAAATGTCCACAGATCGAAAGACCGTCCTCATCACGGGC
TGCTCCGATGGAGGCATCGGAGCTGCACTGGCTGAGACTTTCCACGATCA
CCGTTATCATGTCTTTGCCACTGTGCGCACGCCATCAAAGGCCCCCAAGT
CTCTCATCAACTCTCCCAATGCCACCGTCCTCACCCTGGATGTGCTGGAC
TCGACGTCTATCTCCGATGCAGTGGAAAAGGTGACGAAAGCCACTGGCGG
CAAGCTTGACGTTCTAGTAAACAATAGTGGAGGCAGCATTATCCTCCCCG
CTTTGGATACTTCAATCGAAGACGGCAAAAAGTTATTCGACTTGAATTTC
TGGGCGCCCTTAGCTGTGACGCAGGCCTTTGCTCCTTTACTGGTCAGGTC
CAAAGGTTGTCTTGTAAACAATACATCAGTGAATGGAGCTCTTCCATTTG
TATTTATGAGCATGTACAATTCCTCAAAAGCGGCCTTTATGAGCGCCAGC
GAGACTTGGCGTATGGAGCTGGCTCCGCTGGGTGTTCGGACCATTACTCT
CATGACTGGTGGTGTGAAGACTAAGTTCTTTGACAACTACGTTCCTCGCC
AAGTCCCCGAGAACTCCTATTACATTGGAGCAAAGGATGCTATTCAGAAA
ATGGGAGATGGGAGCTTGCAGGATAGCGGCGTCGATAGGTACTCATATGC
CTCTAAGGTGTTTCAGGCAGTCGAGAGGAAGGAGTCAGGAAAGCTGTGGG
TTGGTGGAGGCGCTGTTCCTGCGAAATGGGCACTGTGGTTATTGCCGCAA
TGGGGTGTGGATTTGATGATGAGAAAAATGTTTCCTGTGTTTGGAACAAT
CGAAGCTGGGGTGAAGAAAGACGCTTAAATGTCCACAGATCGAAAGACCG
TCCTCATCACGGGCTGCTCCGATGGAGGCATCGGAGCTGCACTGGCTGAG
ACTTTCCACGATCACCGTTATCATGTCTTTGCCACTGTGCGCACGCCATC
AAAGGCCCCCAAGTCTCTCATCAACTCTCCCAATGCCACCGTCCTCACCC
TGGATGTGCTGGACTCGACGTCTATCTCCGATGCAGTGGAAAAGGTGACG
AAAGCCACTGGCGGCAAGCTTGACGTTCTAGTAAACAATAGTGGAGGCAG
CATTATCCTCCCCGCTTTGGATACTTCAATCGAAGACGGCAAAAAGTTAT
TCGACTTGAATTTCTGGGCGCCCTTAGCTGTGACGCAGGCCTTTGCTCCT
TTACTGGTCAGGTCCAAAGGTTGTCTTGTAAACAATACATCAGTGAATGG
AGCTCTTCCATTTGTATTTATGAGCATGTACAATTCCTCAAAAGCGGCCT
TTATGAGCGCCAGCGAGACTTGGCGTATGGAGCTGGCTCCGCTGGGTGTT
CGGACCATTACTCTCATGACTGGTGGTGTGAAGACTAAGTTCTTTGACAA
CTACGTTCCTCGCCAAGTCCCCGAGAACTCCTATTACATTGGAGCAAAGG
ATGCTATTCAGAAAATGGGAGATGGGAGCTTGCAGGATAGCGGCGTCGAT
AGGTACTCATATGCCTCTAAGGTGTTTCAGGCAGTCGAGAGGAAGGAGTC
AGGAAAGCTGTGGGTTGGTGGAGGCGCTGTTCCTGCGAAATGGGCACTGT
GGTTATTGCCGCAATGGGGTGTGGATTTGATGATGAGAAAAATGTTTCCT
GTGTTTGGAACAATCGAAGCTGGGGTGAAGAAAGACGCTTAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012235-T1.utr5p1 | KJC3_012235-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012235-T1.utr3p1 | KJC3_012235-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036291 |
| DBxref | InterPro:IPR002347 |
| DBxref | PFAM:PF13561 |
| DBxref | PFAM:PF00106 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:2970203..2971438 + |
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