|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:2998855..3004419- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012246-T1 ID=KJC3_012246-T1|Name=KJC3_012246-T1|organism=Aspergillus niger KJC3|type=mRNA|length=5565bp|location=Sequence derived from alignment at ch8:2998855..3004419- (Aspergillus niger KJC3)
GACTAGTATAGCCTCGGTTAGTACTTTTTCTTAGTGTTACACAGATCCCA
GGAACCGCCGAACTGGCCTCCCACTTTGGCTCCACTACGTCTGGAACAAA
AACATCCAATGATTGATTCTCCTCGCCGTTCCTCAATCCAAGTCGTGAAC
TTTCAACGGCAGTCCGGTGTTTGCTGCAATTACTCACACCCGCAGTACAT
CGTATTGGGATCGATTGTCTGCAGTACTTGTGAGGTACATGTGTCCACTG
GACGAAAATCATGTCGTTGCTGGGTCATTCTTCGGTTCCTCGTCCTCCTT
TTCCCTGTCGAGTGACGATCCATACCTCTTTCTCCGGTACAATTCTCCCT
TCGTAGGTTTTGATCTTCTCCGCTCAGTCAACCAGCTGGAACGGGACCCT
CTTTTCCGATGGTGGATTCTTTGGGGGTTACCGGGTTTCTCTTACTCATG
GCCTTCCCCTCCATTGACTGGCCTTTGGGCTCAAGCACACCATGGCGTCA
ACTGCAGCTCGGCCCCAAGTCTTAGCTCTTCCAGGGCCGCAACCGGAGCA
ATTATAATGAGCAATTCGGGTCTTGAAGATTAGTGTGTCTGTCCCTGCTC
TGTACGAACTATGCTAGCTCCTTTTCTATTTTTTTTCTTGTGGACATTCT
CTCTTTAAACTCCCGTCCTCCTTCTTTCTCCCCTCCGCTTTCTCCAGATC
TGGTGAATTACTCACTTGAATAGAGTATTGTCGACATTGGCGGGGATGCT
TTTTGGGGGACGTCTGTCTGAGTGTATCGGTTCACTCTTGCCCCATTGCC
GGTCGATCCGTCTCGCGGGGATTTCGACTCATACCCTTCCAATTGAGGGA
CTCTGGAGCACCAGTGCCCTGGCTCCCCGTGCGCCTCTTTCGTTGACACA
TTGCGACTGAAGTTTAGAGTCGCGACAGCAGGTCCTGTCATATAACAGGA
TCCATACTTAACTACTCGAGCCTTGCCCTGCCGCTTCCAACCGAGACTGC
GCACACCTATAAGTCACAATGGCAGACCCAGAACCATTGTCTGATGGGCG
GGCAGACTCTAATGGTGTCTATGGTTTGGTATGTCAAGTCCAATTTGCTC
GTTCGAAGGATGGGCATCAGGTACTGACTTGGGTGAACCCTCTCTTTGCA
TCTAGATGCGATCTGTCAAAGGACTAATCCCAACCAAAGCACACCTGAAG
CAGTTCTTTGCCTACGTGCACCTTCTTTTTTCTTTGGATTACACCATATT
CGACGTATTTCTCATTGTATGCGGCGTGATATTCGGGATAGCTGGAGGAA
TCCCCTTCCCTCTGCTTGGGATTGTATTTGGTAATCTGATCAACAACCTC
AATTCGACAACTTGTTCCACTTCAGATAATGCTTCGTCAAGTTTGTCGTC
CAGTGTACGCACCGAGGTTCTCTATGTGATTTACATCACCATAGCGAACT
TCTTCATCATCTATATCTACACGTCATGTTGGTGCCTGGTGAGCGAACGT
CTGGCGCGCCGCTATCGCAGGCGATACTTTGAAAGTATCATTAGGCAGGA
CATGAATTTCATCGAGTCTCTTCCTTCGGGCGATGTGATCTCCCGGTTGG
TCAGTGACATTGAGACAGTGCAAATGGGGACCTCGGAGAAGGTGGGCCTG
GTGATCTCCACTGTTTCATACTTTGTGACCGCCTATATCGTGGCTTTCAT
TAAGGCGCCAAAGATTGCGGGCATGCTGGTTTCAGTGGTGCCTTGCTTTC
TCCTTATGTCCCTGGTAGGAGGTCACTTCATCAAAAAATATGCGAGCCGG
ATTACAGCCAATATCAATGCGGCTACATCGATTGCCTCGTCCAGTCTATC
GCATTTGACCCTGGTTCATGCTTTCAATGCCAACGACCGCTTGGAGCAGC
GATTTGCCACTTATCTCTCCAGGTCATCGATGGATGCACTCAAAAAGGCA
GGTACGCATGCTACGCAACTTGGATTCTTGTACTTTGTGGCATACTCAGC
CAACGCCTTGGCTTTCTGGGAGGGTTCCCAGATGATTTCCAACTCGGTTG
CCCACGATAACTCAGGTATTTCTGTGGGTGCTGTATACACCGTCATTTTC
GTTCTCATCGATGCTTCCTTCATCTTAAGCCAAGTTGCCCCCTTTATCCA
TGTCTTTGCGTCCGCAGCCGGTGCCTCGGAGCGACTTCTAGCCGTGATCA
ATCGTCGTTCCGCCATTGATGGAACCGCAGACGAAGGTGATAAGATGACT
GCCTTCGGAGAGGAGAACATTGAGTTTCATGATGTTCACTTTTCGTACCC
GGCTCGACCAGACGTTCCAGTACTCCGGGGAATGAGTTTTGTCATTCCTC
CTAGGAAGCATACCGCCATTGTTGGACCCTCCGGCGGTGGAAAGTCAACC
GTGGTTTCTCTCCTAGAACGGTTCTATGACCCTGCATCAGGCGATGTGAC
TATCGGAGGAAAGAGTTTCCGAAATATCAATGTTCGACATTTGCGAGGCA
ATATTGGTTTCGTTCAACAAGAACCGGCTTTACTGGATCGAACAATTCTG
GAGAATATTGCGTACGGCCTGGTGTCCTCATCTTCAGAGAAGCATCAACG
GCTCGCCCCGTTCATTCTCGATGAAAGTCTTTCGGCTCTTGCTTTCAAGA
TCAGGGAAGGCATGTCCGAGAACGCTGCTCTTACTGGCTTCGACAGTTGT
GTGGCCGAGATTTTAGAACTCGTCAGGGAGGCAGCCGCCAGCGCTAATGC
GTTGAACTTCATTGATGCTTTGCCTCACGGATTCGCAACCCTCGTTGGAA
CAGCAGGAAATCAGCTGAGTGGAGGTCAGAAGCAGCGAATTGCCCTTGCT
CGTGCTCTTGTGCGAGAACCGTGTTTACTCATTCTCGATGAGGCTACGGC
TGCCTTGGATTCCACCAGCGAACAACTTATCCAGGCTGCACTGGCCAAAG
TCTCCGAAACGGTAACCACGGTTTCGATCGCACATCGACTAGCCACTGCC
AAAAATGCACACAAGATTGTTGTCGTACAGACTGGACGTGTCACAGAGGA
AGGATCTCATGCGGAGCTCGTGGCGCAGGGCGGCGTGTACGCAGAAATGG
TACGGCTGCAAAACCTGGGTAAATTGAGTATTGAAGATCTGAAGAGCCCT
CAAGATATGATCACCACGAGCAGTCTTCATGAGAGTGTGCAGCCGGCAGA
CGAAAAGGAACCCTTGGTAGGCATTGGGGGCTCAGACATCACTGAAGACA
CGGTGGTTGGTGAGGTGTCCCCTGGTTCCAAAAATGGTGATGGGAGCAAA
GACAAGAAGAGAAGCCGTTCGGGCTGGTTCACCATTAAGTATACGTTCTC
GCTAGTGCGGGCCAACCTGCCGTTGATTTGCCTCGGCCTCTGTATGTCCG
TCATCATTGGAGGTAGCTACTCGGCCGAGGCGATCGTCTTTGGCCACACA
GTTGGCAGTCTGAGCCCCTGCAGATCTTCTGATGCCATCAGTGACAGTGG
CAACCTTTATGGGTTGCTGTTTTTCATCCTTGCCCTGGTTGAGCTTACGG
CAAATGTGGTGGGCGGCTGCGCCTTTGGCTGGGCAGCGGATAAGATCCTG
TATCGGCTCCGAGTGCTATCGCTACGATCGCTGCTTAGCCAGACCATACA
ATGGCATGGTATGGAGGACCGGACACCAGGAACTTTGATCACATATATCA
CTGGGGATGCTGCTTCGCTGAGTGGCATTACCGGATCAACTATCGGTCTC
CTCCTTGCTACAGCCGTCAACCTGGTAGCCGGGTTGGTGATATCGTTTGC
CATCGCGTGGAAAATCACTATTGTCTTATTTCCGACCATACCCGTCCTAC
TTATAGCAGGCATGATGAAGCTCCGTGTCCAAGCCAAGTTTACCGAGCGG
CATCAGAAGGCATTTGCCGAGGCAACGGCCATCACAGTCGAGGCCGTCGA
TAACATTCGTGCTGTTGCAGCATTCTCCCTCGAGAAGCAATCTCAGGAAG
TGTTCGTTCGAGCCCTGCGCCGTCCCTACCGGGACACAATGAAGGCTATT
GCACACGGCAACGCCTGGTTGGCATTGGCGTTTAGCATCAGCAACTTGGT
GTATGCCCTCGCATATTGGTGGGGATCGAGGCAGGTGGCATCGGGGCTCT
ACTCTCAGACTCAGTTCTTTATTGTCCTCCCTTGCCTGCTATTCAGTACG
CAGTCTTGTGGTCAAATGTTTGCTCTGGCGCCAGATATCTCCAAGGCCCG
TCTGGCGTCGTCCAACATTGTTGATCTGCTCACTACCCGCTCTGCGGAGG
AGGAGTTGACTCCGGGTTCCATGCAGAGCATGCAACCCTCAAGCAGGCTG
CTTGAGGAAAAGGCCGCCACACAGGACGTGGAGGCCGCAGAGAAGCCCCG
TACGGGTGTGCGCCAGACGAATGGCAACGGTATCGGCGCCCAGCTTCGTG
GGGTGCACTTCACCTACCCCAATCGGCCTGAACGTCCAATCTTACGAGGA
CTTAACCTGGACATCAAGCCCGGTCAGTTCTGTGCGCTGGTCGGACCTAG
CGGATCGGGCAAATCGACGACATTTGCCATGCTGGAGCGATTTTACCGTC
CTGCAGCCGGGTCGGTGATCATCGACGGAGTTGACGTGACTCGGCAACTA
GGCACTGAGTTCCGGGATGATATCGCATTGGTGCCGCAAGAGAATGTTCT
GTTTGAAGGCACGGTCGCGTTCAACATTGGCCTGGGTGCTTGCCCTGGGC
ATGAACCAACACAAGAAGAGATCGAAGCAGCGTGTCGCATGGCGCACATC
CACGACGTGATCATGGCCCTGCCGGACGGGTACCAGACGATGTGCAGCCA
CGACGGCAAGCAATTCTCAGGCGGGCAGCGCCAGCGCCTGTCAATTGCAC
GCGCGCTGGTGCGCAAGCCACGGCTGCTGCTGCTGGACGAGTCGACGAGC
GCACTGGATGTGGAGTCGGAGAAGAAGATCCAAGAAGCCCTGACAACGCT
AGCGGGCCGCACGACCATTGTCGCGATCGCGCATCGACTGAACACGATCC
ACCGTGCGGATCAGATCTATCTGATTGAGGAGGGCCGCTGTGCGGAGCAA
GGAACCCATCAGGAGCTGATCCAGCGCAGTGAGACGTATCGAACGAGTGT
GATCCACCAGTCGCTGGAGACCTAACGAAGATGGGCGACTGAAACACGGC
ACTGCTGCATCGGAACGCACCAAAAAAGAACAAGGGCACTCCTTCATTAT
GAGATGGTGTTACCCGTTCATCTACAGCATGTCTTCCGTTACTGTTGGGA
GTGGAGCTTGGCTGCATCTTGCGATATGGGATTTTCCTCTATAGACGCGA
CATAAATAGGTAGCATCTGGTAAAATCATTGATTGGTTTGAAGAATTGGC
GCAATCTCACCCGGGTATTTGATAAACCAGGGATTTTGTTGTGTTTGAAA
GGCGTTTATGGAAGTGATTGGATAGTGTACATAGAAGCGTTAATCTACAC
CTACAACAAGTATTTGCTGGCTTGGGATAGACTTCCGAGTCAGTGGCTAG
GCTGCCTGAGGCGCT back to topCoding sequence (CDS) from alignment at ch8:2998855..3004419- >KJC3_012246-T1 ID=KJC3_012246-T1|Name=KJC3_012246-T1|organism=Aspergillus niger KJC3|type=CDS|length=4020bp|location=Sequence derived from alignment at ch8:2998855..3004419- (Aspergillus niger KJC3)
ATGCGATCTGTCAAAGGACTAATCCCAACCAAAGCACACCTGAAGCAGTT
CTTTGCCTACGTGCACCTTCTTTTTTCTTTGGATTACACCATATTCGACG
TATTTCTCATTGTATGCGGCGTGATATTCGGGATAGCTGGAGGAATCCCC
TTCCCTCTGCTTGGGATTGTATTTGGTAATCTGATCAACAACCTCAATTC
GACAACTTGTTCCACTTCAGATAATGCTTCGTCAAGTTTGTCGTCCAGTG
TACGCACCGAGGTTCTCTATGTGATTTACATCACCATAGCGAACTTCTTC
ATCATCTATATCTACACGTCATGTTGGTGCCTGGTGAGCGAACGTCTGGC
GCGCCGCTATCGCAGGCGATACTTTGAAAGTATCATTAGGCAGGACATGA
ATTTCATCGAGTCTCTTCCTTCGGGCGATGTGATCTCCCGGTTGGTCAGT
GACATTGAGACAGTGCAAATGGGGACCTCGGAGAAGGTGGGCCTGGTGAT
CTCCACTGTTTCATACTTTGTGACCGCCTATATCGTGGCTTTCATTAAGG
CGCCAAAGATTGCGGGCATGCTGGTTTCAGTGGTGCCTTGCTTTCTCCTT
ATGTCCCTGGTAGGAGGTCACTTCATCAAAAAATATGCGAGCCGGATTAC
AGCCAATATCAATGCGGCTACATCGATTGCCTCGTCCAGTCTATCGCATT
TGACCCTGGTTCATGCTTTCAATGCCAACGACCGCTTGGAGCAGCGATTT
GCCACTTATCTCTCCAGGTCATCGATGGATGCACTCAAAAAGGCAGGTAC
GCATGCTACGCAACTTGGATTCTTGTACTTTGTGGCATACTCAGCCAACG
CCTTGGCTTTCTGGGAGGGTTCCCAGATGATTTCCAACTCGGTTGCCCAC
GATAACTCAGGTATTTCTGTGGGTGCTGTATACACCGTCATTTTCGTTCT
CATCGATGCTTCCTTCATCTTAAGCCAAGTTGCCCCCTTTATCCATGTCT
TTGCGTCCGCAGCCGGTGCCTCGGAGCGACTTCTAGCCGTGATCAATCGT
CGTTCCGCCATTGATGGAACCGCAGACGAAGGTGATAAGATGACTGCCTT
CGGAGAGGAGAACATTGAGTTTCATGATGTTCACTTTTCGTACCCGGCTC
GACCAGACGTTCCAGTACTCCGGGGAATGAGTTTTGTCATTCCTCCTAGG
AAGCATACCGCCATTGTTGGACCCTCCGGCGGTGGAAAGTCAACCGTGGT
TTCTCTCCTAGAACGGTTCTATGACCCTGCATCAGGCGATGTGACTATCG
GAGGAAAGAGTTTCCGAAATATCAATGTTCGACATTTGCGAGGCAATATT
GGTTTCGTTCAACAAGAACCGGCTTTACTGGATCGAACAATTCTGGAGAA
TATTGCGTACGGCCTGGTGTCCTCATCTTCAGAGAAGCATCAACGGCTCG
CCCCGTTCATTCTCGATGAAAGTCTTTCGGCTCTTGCTTTCAAGATCAGG
GAAGGCATGTCCGAGAACGCTGCTCTTACTGGCTTCGACAGTTGTGTGGC
CGAGATTTTAGAACTCGTCAGGGAGGCAGCCGCCAGCGCTAATGCGTTGA
ACTTCATTGATGCTTTGCCTCACGGATTCGCAACCCTCGTTGGAACAGCA
GGAAATCAGCTGAGTGGAGGTCAGAAGCAGCGAATTGCCCTTGCTCGTGC
TCTTGTGCGAGAACCGTGTTTACTCATTCTCGATGAGGCTACGGCTGCCT
TGGATTCCACCAGCGAACAACTTATCCAGGCTGCACTGGCCAAAGTCTCC
GAAACGGTAACCACGGTTTCGATCGCACATCGACTAGCCACTGCCAAAAA
TGCACACAAGATTGTTGTCGTACAGACTGGACGTGTCACAGAGGAAGGAT
CTCATGCGGAGCTCGTGGCGCAGGGCGGCGTGTACGCAGAAATGGTACGG
CTGCAAAACCTGGGTAAATTGAGTATTGAAGATCTGAAGAGCCCTCAAGA
TATGATCACCACGAGCAGTCTTCATGAGAGTGTGCAGCCGGCAGACGAAA
AGGAACCCTTGGTAGGCATTGGGGGCTCAGACATCACTGAAGACACGGTG
GTTGGTGAGGTGTCCCCTGGTTCCAAAAATGGTGATGGGAGCAAAGACAA
GAAGAGAAGCCGTTCGGGCTGGTTCACCATTAAGTATACGTTCTCGCTAG
TGCGGGCCAACCTGCCGTTGATTTGCCTCGGCCTCTGTATGTCCGTCATC
ATTGGAGGTAGCTACTCGGCCGAGGCGATCGTCTTTGGCCACACAGTTGG
CAGTCTGAGCCCCTGCAGATCTTCTGATGCCATCAGTGACAGTGGCAACC
TTTATGGGTTGCTGTTTTTCATCCTTGCCCTGGTTGAGCTTACGGCAAAT
GTGGTGGGCGGCTGCGCCTTTGGCTGGGCAGCGGATAAGATCCTGTATCG
GCTCCGAGTGCTATCGCTACGATCGCTGCTTAGCCAGACCATACAATGGC
ATGGTATGGAGGACCGGACACCAGGAACTTTGATCACATATATCACTGGG
GATGCTGCTTCGCTGAGTGGCATTACCGGATCAACTATCGGTCTCCTCCT
TGCTACAGCCGTCAACCTGGTAGCCGGGTTGGTGATATCGTTTGCCATCG
CGTGGAAAATCACTATTGTCTTATTTCCGACCATACCCGTCCTACTTATA
GCAGGCATGATGAAGCTCCGTGTCCAAGCCAAGTTTACCGAGCGGCATCA
GAAGGCATTTGCCGAGGCAACGGCCATCACAGTCGAGGCCGTCGATAACA
TTCGTGCTGTTGCAGCATTCTCCCTCGAGAAGCAATCTCAGGAAGTGTTC
GTTCGAGCCCTGCGCCGTCCCTACCGGGACACAATGAAGGCTATTGCACA
CGGCAACGCCTGGTTGGCATTGGCGTTTAGCATCAGCAACTTGGTGTATG
CCCTCGCATATTGGTGGGGATCGAGGCAGGTGGCATCGGGGCTCTACTCT
CAGACTCAGTTCTTTATTGTCCTCCCTTGCCTGCTATTCAGTACGCAGTC
TTGTGGTCAAATGTTTGCTCTGGCGCCAGATATCTCCAAGGCCCGTCTGG
CGTCGTCCAACATTGTTGATCTGCTCACTACCCGCTCTGCGGAGGAGGAG
TTGACTCCGGGTTCCATGCAGAGCATGCAACCCTCAAGCAGGCTGCTTGA
GGAAAAGGCCGCCACACAGGACGTGGAGGCCGCAGAGAAGCCCCGTACGG
GTGTGCGCCAGACGAATGGCAACGGTATCGGCGCCCAGCTTCGTGGGGTG
CACTTCACCTACCCCAATCGGCCTGAACGTCCAATCTTACGAGGACTTAA
CCTGGACATCAAGCCCGGTCAGTTCTGTGCGCTGGTCGGACCTAGCGGAT
CGGGCAAATCGACGACATTTGCCATGCTGGAGCGATTTTACCGTCCTGCA
GCCGGGTCGGTGATCATCGACGGAGTTGACGTGACTCGGCAACTAGGCAC
TGAGTTCCGGGATGATATCGCATTGGTGCCGCAAGAGAATGTTCTGTTTG
AAGGCACGGTCGCGTTCAACATTGGCCTGGGTGCTTGCCCTGGGCATGAA
CCAACACAAGAAGAGATCGAAGCAGCGTGTCGCATGGCGCACATCCACGA
CGTGATCATGGCCCTGCCGGACGGGTACCAGACGATGTGCAGCCACGACG
GCAAGCAATTCTCAGGCGGGCAGCGCCAGCGCCTGTCAATTGCACGCGCG
CTGGTGCGCAAGCCACGGCTGCTGCTGCTGGACGAGTCGACGAGCGCACT
GGATGTGGAGTCGGAGAAGAAGATCCAAGAAGCCCTGACAACGCTAGCGG
GCCGCACGACCATTGTCGCGATCGCGCATCGACTGAACACGATCCACCGT
GCGGATCAGATCTATCTGATTGAGGAGGGCCGCTGTGCGGAGCAAGGAAC
CCATCAGGAGCTGATCCAGCGCAGTGAGACGTATCGAACGAGTGTGATCC
ACCAGTCGCTGGAGACCTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0042626 | ATPase-coupled transmembrane transporter activity |
| GO:0005524 | ATP binding |
| GO:0016887 | ATPase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012246-T1.utr3p1 | KJC3_012246-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036640 |
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR017871 |
| DBxref | InterPro:IPR011527 |
| DBxref | InterPro:IPR003439 |
| DBxref | InterPro:IPR003593 |
| DBxref | PFAM:PF00005 |
| DBxref | PFAM:PF00664 |
| Product | ABC multidrug transporter mdr4 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:2998855..3004419 - |
|
