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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:3021704..3025980- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012253-T1 ID=KJC3_012253-T1|Name=KJC3_012253-T1|organism=Aspergillus niger KJC3|type=mRNA|length=4277bp|location=Sequence derived from alignment at ch8:3021704..3025980- (Aspergillus niger KJC3)
CTTGCGACGGTATGTTCCATCTGGGAGGTTTGCAGGGCCGACGCTGAAAC
CCTTTCTCTTCTTCACGGGGGCATCGCTGGTGGTTCCCCGCTTCTCGTCG
GCGGTGGTGGTATCGTCGCGGGAGCGTTTCGGGGCCATGGTTGGTCGGGC
GATTTGAAGTAGTTGTCTATGAGACCTGCTTTCTTTTTCTTGTTTCTTGT
AATCGACTCCGGTCGCGGAGGGTAAGGAGCGGTGTATTGGGCAGGAATTT
AATCAAGCGACAACGTGGCGGGGGTGGGATGCGTTGTTCGTTGACCTTTT
AAGAGCTGCAGAAGAGAAAAAAAAAAAAGTTTTGGACGGAAGAGGCCGAG
CGGGTGCAGGAACTCGAATTAGCGGGTGATGGGCTCTTGCAGGATGTTTC
CAAGCAAGCTGCGTTGTCTCCACCGGGAATGGCGGGATTTTAGTAAAATT
ATCTGAAAAGTTGCAGGAAATAATTCTGCAGGTGTAAGGTTACAATGGAG
GGGGAGAATAGCAGATATAGAGTTGGGCAGTGAAACTGATTTGAGGGTCG
GCGATGATGGAATCGAAAGCGTTGCCTCCGCATCTTCTCTCTTTCTGTCT
CGTCTTTTTCTCCTCTTCCGCATTTCTCTCCCCCTCACGTCTACTACTAA
CTGCTTGCTCTTCTTTCTCTACTTGCGCCCGATTAATCCTCTAGTCGTTT
CAGATACCCTGTTAAATTTCATCGCTCATTATCCCCGGTCAGTCTTGCTG
TCTTATCGTCTATAGTACTAAATATATATATATCACCTCTTTTTCCCTCT
GGTTCCCCACGCCCAAAAACAACTTACCCACTCAGAGCCAGTCTTCCAAA
AGGCAGATCAAGTCATCGTCGACTCCACCGTGACTCTTCCTCTTCCGCCA
CTTCGGTTTCGGCGGATCATCGCAACCTCTGCAATCCCCTCCCTCTTGCG
TTATCAGAGGTCCTCGCTGCCCGTCTCCCTGCTCTCGGCTCCTGAGGTTG
CGATGTTTGCCCTCGTTTCCCGTCATTCTGCCCATCCCCTCTCCCGGTGA
CCATGCCTATCTTCCAGGATCCGGAACACCAGCGGCTCCAGGATTCGTGG
TCTGGTGATCACCAGCCACGGCTTAATGGTCGACGTCAGACCATTTCCCC
TTGGAAACACCCTCCTGGGGAGCCCCTGGGAAGCCACCCCCTCACGGGGC
CTCACAATGTCCCCCATGAGGGTCCCTCCCTGGATCTAAGCCGGCCGGGA
ATGCATGCAACAAATCGCGAGGAACTGATCCAGTATATCAAAAGCGCAGA
TGCGCCGCGATGGGCATCACATCACTCCGTATGTCCTGCCACTGTAAAAC
CACTTATTGTCTTGGATTCTTCTTTTCTTTTTGACCTTTGTTATCTCTTA
TCTAAAACAGCAAAAGTTTCATTGTCATGTATCCGAGACGTTACTGACCC
TGTCACTTGATATAGGCGGGAAACAGTCCGAACCCCACCCCCCAGACGTC
CGATGTACCTTTCGCCAATATGAAAGGTAAAGCACCTGCAAGTGCTGGTC
CCAGCGACCAGTCTGGCTCGAGTGATCAGCAGTTAGCATCGCCGGCCGAT
ATTGAACGCCCTCGCTCAGCTTTACATTCAGGAGACTTCAGGGAAGGAAG
CTCTCAAGCCCAGAGCCAGCAGCACACCCCGTCATCGTCGGTGCCTGGTC
GCACCGTTAACACACACTTTCCACTACTGAGCTCCTCACCAACCACGCCT
TGGTTCAGTACTCCCGTTTTCCCCGCCTCTCTACGAGGCCAATCCTTATC
CGTTCAGACGGCAGCCCCGGCAGCCCGTTCCCGGGCTCCCTCTTTCGGCT
CGTTTTCTTCGAGCTATATATTGAAAGCCCCAACGAGCCCTCTTGTTCAC
CAAGCAAACAACACAGACCTGGATTTCTCTCCTCGACCGGAGTGTGTCGG
TCACTCGAACGCCATCGACAAAGTTAGTCGTCGCCGTACCCTTCCCCCGG
AAACATTTCAGCACTTGCAAGCATCTTCCCAGGGTCATGCGGAGGGGATT
TACTTCCAGTCTGATGCTCACCACTCACGATGGGATACGACCACATCCAA
TCAGTTTCACTCCCCTCGGCGGTCCTTGACCTCAGCATACAGCCTTCAGC
TTGCATCCTCGGTTCAAACTCCGATCGCGAGGGTCCGAAGGCCCTCGGTG
GGCTCGGAAGTCTCTTCCAGAGCGCATGCGCCAATGGTTGGCTCATACGA
AGAGTCTATCCTTCGTGGAAGAATGTCAATGAGCCCTTCCAAACCGTTGG
ACTTCACCGCGCAAATCGGCGTCCTCGGTAAAGGCAAAAGCAAAGCCAAC
CTCAAATGCCCACCGCATGTGACAATCCCGTTTCCGGCGGTGTTTTACAG
CTACCCCACGTCAGGCAGCGGCCGCTCAATCGCGGACGATAGCCCCAGTC
CTTATGTTGGCTTGATCGATCTGGACAATTTTCTTCCTCGGGACACGTCC
AGTGGTAGCAGTCGACGTCGCAGGCGCCATCAGAGCCCTGCAGGAACACA
CAACGACTGTGTCATGGGTAATACCACAGATCCTAGGTCAACTGACCAGG
AAACTTTGCGCAGGCGCGAGAAGAGGCACAGAAGGGCGGAATCGCCCAAA
AGTCCACCAGGTGGTTGTTACCGAATCCCACAACACGGTCAGTTACAGAT
CATGATCAAGAACCCCAACAAGACAGCTGTGAAGCTGTTCCTCGTACCTT
ACGACCTCAGCGACATGGAGCCGGGGACAAAGACGTTCATCCGACAACGA
AGCTATTCGGTGGGTCCCATCATTGATATGCCTCTGAGTGCTCGAAAGAA
TTATGGGACCGATCGCCCCGAAGCGTCGCTGAACGCTTCTGAGGATCCCA
AAGACAAGCCTACACTACGGTACTTGATCCATCTGAACATATGTTGTCCT
TCTCGGGGCCGATTTTATCTTCACTCTAGCATTCGTGTTGTATTTGCCAA
CCGAGTTCCCGACGGTAAGGAAAAACTACGCAATGAAATCCAATGCCCTG
ATCCCCGTTATACGCCTTACAAACCCTCGCGGGACTCCAGTCATACGCAC
GCAGCTACACAGTCCTCGACAGACCAAATACCACACAAAGCGCCCACTGG
TCGAGAGCCATTATCAATGCTGAGTCCATCGGAGGCTATGACCTCACGAG
AACCCCCCTACTCTGGGAGCTCCTCTACGCGTGCTCAAGAAGACCCGTTC
TCGGGTCGCACACTTGCAGGACGAGAAGGTGCCCCACGAGGCACCTCCAA
CCTCTTCAGTCCACCCGATACTTCCTCACATCCTTTCCGGCCCATCCCGT
CACTGTCTCCAGGGCCTAGACTTGACTCGAGTTTTGCGGAACAGTGTAAT
ATGGAGCGTGGGCTCTATGGTAAACTCAGTAAGGGTGAGACCGGCTATGG
CGGGTATCCGTTCGCCTTTAACGGTTCGGAGGCTGGTGACAGCCTCCTGG
CCAGAAAGCTTAGGGGTTTGGACGTGCACAAGCACGACTGTCCCGACCTC
ACAAAGGCCCGCGAATAACGCCAGCACGCTTCCGACCAGCATGACTTCGA
CCGTATCGTGATGGTAAACTTGTTATTTCTGTTTCCTCTTCTTCAATTCT
TTCATACATCTCATTTAAGTGTGCATTTTCCTCCTCAAGCAGGACGACAC
AGCGCATCAGGACAAACCCATCGTCTTCCTCAACTAACAGCACAGCACCA
TATTTGAAGCGCAGATGCAGGATCATCGCATTCATTATAATGTTCAATCC
TGCCGTTCCCCCAAACTAAATACGCACGGCAAGGCGCACAGGTCAACCAT
ACAGTACGGGAACTAGCAAATATACCCACCTCAAGTCACCTTCTCTGCTC
TTTACATATTCCACTATTCTAGATATCTTGAACAAGTCTTCTTTTCTCTC
TCTCTCTCTCTCTTACTCCCTCTTTATCTGCTCTAGGCGATCCCTTCAAA
TTTTCATAACCCTCGATTGAACACTGGTCAAGCAACTGATGAGCACAGCG
CGTTCAGCACTTTCTCTTTGTTCCACTCTTGTTGAAATAGGCGGTGTCAT
GCGGTCTGGTAATTGTTTCAGGGGCTTGAATAATACGGAGACGATTCTGT
TTTAGTCAGGGCGAAACACGAATGCCTGACTGAGTCTGCACTATGCTTGC
GGGTGTTATATAACACTGTGTGTCACATAGTTGTTGTAGATTTGATGTGT
GGTAATTGGGATTATCTCCTCTTTCGC back to topCoding sequence (CDS) from alignment at ch8:3021704..3025980- >KJC3_012253-T1 ID=KJC3_012253-T1|Name=KJC3_012253-T1|organism=Aspergillus niger KJC3|type=CDS|length=4758bp|location=Sequence derived from alignment at ch8:3021704..3025980- (Aspergillus niger KJC3)
GCGGGAAACAGTCCGAACCCCACCCCCCAGACGTCCGATGTACCTTTCGC
CAATATGAAAGGTAAAGCACCTGCAAGTGCTGGTCCCAGCGACCAGTCTG
GCTCGAGTGATCAGCAGTTAGCATCGCCGGCCGATATTGAACGCCCTCGC
TCAGCTTTACATTCAGGAGACTTCAGGGAAGGAAGCTCTCAAGCCCAGAG
CCAGCAGCACACCCCGTCATCGTCGGTGCCTGGTCGCACCGTTAACACAC
ACTTTCCACTACTGAGCTCCTCACCAACCACGCCTTGGTTCAGTACTCCC
GTTTTCCCCGCCTCTCTACGAGGCCAATCCTTATCCGTTCAGACGGCAGC
CCCGGCAGCCCGTTCCCGGGCTCCCTCTTTCGGCTCGTTTTCTTCGAGCT
ATATATTGAAAGCCCCAACGAGCCCTCTTGTTCACCAAGCAAACAACACA
GACCTGGATTTCTCTCCTCGACCGGAGTGTGTCGGTCACTCGAACGCCAT
CGACAAAGTTAGTCGTCGCCGTACCCTTCCCCCGGAAACATTTCAGCACT
TGCAAGCATCTTCCCAGGGTCATGCGGAGGGGATTTACTTCCAGTCTGAT
GCTCACCACTCACGATGGGATACGACCACATCCAATCAGTTTCACTCCCC
TCGGCGGTCCTTGACCTCAGCATACAGCCTTCAGCTTGCATCCTCGGTTC
AAACTCCGATCGCGAGGGTCCGAAGGCCCTCGGTGGGCTCGGAAGTCTCT
TCCAGAGCGCATGCGCCAATGGTTGGCTCATACGAAGAGTCTATCCTTCG
TGGAAGAATGTCAATGAGCCCTTCCAAACCGTTGGACTTCACCGCGCAAA
TCGGCGTCCTCGGTAAAGGCAAAAGCAAAGCCAACCTCAAATGCCCACCG
CATGTGACAATCCCGTTTCCGGCGGTGTTTTACAGCTACCCCACGTCAGG
CAGCGGCCGCTCAATCGCGGACGATAGCCCCAGTCCTTATGTTGGCTTGA
TCGATCTGGACAATTTTCTTCCTCGGGACACGTCCAGTGGTAGCAGTCGA
CGTCGCAGGCGCCATCAGAGCCCTGCAGGAACACACAACGACTGTGTCAT
GGGTAATACCACAGATCCTAGGTCAACTGACCAGGAAACTTTGCGCAGGC
GCGAGAAGAGGCACAGAAGGGCGGAATCGCCCAAAAGTCCACCAGGTGGT
TGTTACCGAATCCCACAACACGGTCAGTTACAGATCATGATCAAGAACCC
CAACAAGACAGCTGTGAAGCTGTTCCTCGTACCTTACGACCTCAGCGACA
TGGAGCCGGGGACAAAGACGTTCATCCGACAACGAAGCTATTCGGTGGGT
CCCATCATTGATATGCCTCTGAGTGCTCGAAAGAATTATGGGACCGATCG
CCCCGAAGCGTCGCTGAACGCTTCTGAGGATCCCAAAGACAAGCCTACAC
TACGGTACTTGATCCATCTGAACATATGTTGTCCTTCTCGGGGCCGATTT
TATCTTCACTCTAGCATTCGTGTTGTATTTGCCAACCGAGTTCCCGACGG
TAAGGAAAAACTACGCAATGAAATCCAATGCCCTGATCCCCGTTATACGC
CTTACAAACCCTCGCGGGACTCCAGTCATACGCACGCAGCTACACAGTCC
TCGACAGACCAAATACCACACAAAGCGCCCACTGGTCGAGAGCCATTATC
AATGCTGAGTCCATCGGAGGCTATGACCTCACGAGAACCCCCCTACTCTG
GGAGCTCCTCTACGCGTGCTCAAGAAGACCCGTTCTCGGGTCGCACACTT
GCAGGACGAGAAGGTGCCCCACGAGGCACCTCCAACCTCTTCAGTCCACC
CGATACTTCCTCACATCCTTTCCGGCCCATCCCGTCACTGTCTCCAGGGC
CTAGACTTGACTCGAGTTTTGCGGAACAGTGTAATATGGAGCGTGGGCTC
TATGGTAAACTCAGTAAGGGTGAGACCGGCTATGGCGGGTATCCGTTCGC
CTTTAACGGTTCGGAGGCTGGTGACAGCCTCCTGGCCAGAAAGCTTAGGG
GTTTGGACGTGCACAAGCACGACTGTCCCGACCTCACAAAGGCCCGCGAA
TAAATGCCTATCTTCCAGGATCCGGAACACCAGCGGCTCCAGGATTCGTG
GTCTGGTGATCACCAGCCACGGCTTAATGGTCGACGTCAGACCATTTCCC
CTTGGAAACACCCTCCTGGGGAGCCCCTGGGAAGCCACCCCCTCACGGGG
CCTCACAATGTCCCCCATGAGGGTCCCTCCCTGGATCTAAGCCGGCCGGG
AATGCATGCAACAAATCGCGAGGAACTGATCCAGTATATCAAAAGCGCAG
ATGCGCCGCGATGGGCATCACATCACTCCGCGGGAAACAGTCCGAACCCC
ACCCCCCAGACGTCCGATGTACCTTTCGCCAATATGAAAGGTAAAGCACC
TGCAAGTGCTGGTCCCAGCGACCAGTCTGGCTCGAGTGATCAGCAGTTAG
CATCGCCGGCCGATATTGAACGCCCTCGCTCAGCTTTACATTCAGGAGAC
TTCAGGGAAGGAAGCTCTCAAGCCCAGAGCCAGCAGCACACCCCGTCATC
GTCGGTGCCTGGTCGCACCGTTAACACACACTTTCCACTACTGAGCTCCT
CACCAACCACGCCTTGGTTCAGTACTCCCGTTTTCCCCGCCTCTCTACGA
GGCCAATCCTTATCCGTTCAGACGGCAGCCCCGGCAGCCCGTTCCCGGGC
TCCCTCTTTCGGCTCGTTTTCTTCGAGCTATATATTGAAAGCCCCAACGA
GCCCTCTTGTTCACCAAGCAAACAACACAGACCTGGATTTCTCTCCTCGA
CCGGAGTGTGTCGGTCACTCGAACGCCATCGACAAAGTTAGTCGTCGCCG
TACCCTTCCCCCGGAAACATTTCAGCACTTGCAAGCATCTTCCCAGGGTC
ATGCGGAGGGGATTTACTTCCAGTCTGATGCTCACCACTCACGATGGGAT
ACGACCACATCCAATCAGTTTCACTCCCCTCGGCGGTCCTTGACCTCAGC
ATACAGCCTTCAGCTTGCATCCTCGGTTCAAACTCCGATCGCGAGGGTCC
GAAGGCCCTCGGTGGGCTCGGAAGTCTCTTCCAGAGCGCATGCGCCAATG
GTTGGCTCATACGAAGAGTCTATCCTTCGTGGAAGAATGTCAATGAGCCC
TTCCAAACCGTTGGACTTCACCGCGCAAATCGGCGTCCTCGGTAAAGGCA
AAAGCAAAGCCAACCTCAAATGCCCACCGCATGTGACAATCCCGTTTCCG
GCGGTGTTTTACAGCTACCCCACGTCAGGCAGCGGCCGCTCAATCGCGGA
CGATAGCCCCAGTCCTTATGTTGGCTTGATCGATCTGGACAATTTTCTTC
CTCGGGACACGTCCAGTGGTAGCAGTCGACGTCGCAGGCGCCATCAGAGC
CCTGCAGGAACACACAACGACTGTGTCATGGGTAATACCACAGATCCTAG
GTCAACTGACCAGGAAACTTTGCGCAGGCGCGAGAAGAGGCACAGAAGGG
CGGAATCGCCCAAAAGTCCACCAGGTGGTTGTTACCGAATCCCACAACAC
GGTCAGTTACAGATCATGATCAAGAACCCCAACAAGACAGCTGTGAAGCT
GTTCCTCGTACCTTACGACCTCAGCGACATGGAGCCGGGGACAAAGACGT
TCATCCGACAACGAAGCTATTCGGTGGGTCCCATCATTGATATGCCTCTG
AGTGCTCGAAAGAATTATGGGACCGATCGCCCCGAAGCGTCGCTGAACGC
TTCTGAGGATCCCAAAGACAAGCCTACACTACGGTACTTGATCCATCTGA
ACATATGTTGTCCTTCTCGGGGCCGATTTTATCTTCACTCTAGCATTCGT
GTTGTATTTGCCAACCGAGTTCCCGACGGTAAGGAAAAACTACGCAATGA
AATCCAATGCCCTGATCCCCGTTATACGCCTTACAAACCCTCGCGGGACT
CCAGTCATACGCACGCAGCTACACAGTCCTCGACAGACCAAATACCACAC
AAAGCGCCCACTGGTCGAGAGCCATTATCAATGCTGAGTCCATCGGAGGC
TATGACCTCACGAGAACCCCCCTACTCTGGGAGCTCCTCTACGCGTGCTC
AAGAAGACCCGTTCTCGGGTCGCACACTTGCAGGACGAGAAGGTGCCCCA
CGAGGCACCTCCAACCTCTTCAGTCCACCCGATACTTCCTCACATCCTTT
CCGGCCCATCCCGTCACTGTCTCCAGGGCCTAGACTTGACTCGAGTTTTG
CGGAACAGTGTAATATGGAGCGTGGGCTCTATGGTAAACTCAGTAAGGGT
GAGACCGGCTATGGCGGGTATCCGTTCGCCTTTAACGGTTCGGAGGCTGG
TGACAGCCTCCTGGCCAGAAAGCTTAGGGGTTTGGACGTGCACAAGCACG
ACTGTCCCGACCTCACAAAGGCCCGCGAATAAATGCCTATCTTCCAGGAT
CCGGAACACCAGCGGCTCCAGGATTCGTGGTCTGGTGATCACCAGCCACG
GCTTAATGGTCGACGTCAGACCATTTCCCCTTGGAAACACCCTCCTGGGG
AGCCCCTGGGAAGCCACCCCCTCACGGGGCCTCACAATGTCCCCCATGAG
GGTCCCTCCCTGGATCTAAGCCGGCCGGGAATGCATGCAACAAATCGCGA
GGAACTGATCCAGTATATCAAAAGCGCAGATGCGCCGCGATGGGCATCAC
ATCACTCC back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012253-T1.utr3p1 | KJC3_012253-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012253-T1.utr5p1 | KJC3_012253-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR033473 |
| DBxref | InterPro:IPR025261 |
| DBxref | PFAM:PF13915 |
| DBxref | PFAM:PF13889 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:3021704..3025980 - |
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