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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:3781086..3783327+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012508-T1 ID=KJC3_012508-T1|Name=KJC3_012508-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2242bp|location=Sequence derived from alignment at ch8:3781086..3783327+ (Aspergillus niger KJC3)
ACCAGGACAACTGATTGCATTAAACACTTATTCCTCAGCTAAATATGCAT
CTATGTAGCAAAAAGTAAACTAATCGCTGTAGTGTAACCCCCCACAAAGG
TCATCGGCCAGCTGAGTCGCAATCAACCCACCGAGATAACACAACCACCG
AAAGCCGAGACTAAACACGGCCAGAGAAGAGATAAAAGGGCCAGATACCC
AACTGTGCAAGCGCCAGGGGCAAAGTCCGATAACCGGTGTTAGTAGAAAC
TTCGAGGAGAACGTTGCCGTCCCCACCCATTCCCACTTTTTTTTTTCCCA
CGTTGTAACTTTTTTTTTCCCACCCGAGGTGACATCAGCTCAACGGTCAA
CTTGATCCTGATTTTTGTTCAGGAAAAGCTTCGCATATTACTCTGGGAAG
CCCTTTCAACAGGGCCAAAAAGAATAAGAGGAATCACAAGGGGGAAAACA
AGCCTCTGATTGAACTTGACCGATTCTTGATTCTTGATGATTGACGCGGC
ATACACTTCGACGGCCCGTCTCGAATAGCTTCCGACAGGCTTTCCCGACG
ATCATCATTATGACAGACTCCGCCGAGATGGCCTCCTCAGACAGTACAAT
CCAAGGCACGCTTTCGCGGTCAGAATCCATCCGCTCAGCCGTCCAGACCT
TCTCGCCTCTTCATGAGCTCGTCTTCGTCTTCGTGGTGTGTCATGTCGCA
ATTCATGACGCAGGCCGCGCTCGGAAATACGCTCGCCCCACTTGAGATCA
TCAGTGACAGCTTCGGCATCACCAACCCTGGCATCTCCAGCTGGCTGATC
GCAGGGTACTCCCTAACTGTCGGTACATTTATTCTTTTCTTTGGCCGCTG
TGGCGATATTTTCGGATACCGTATCTTGTATATCATCGGATGGATATGGT
TCGCGATCTGGTCCCTGGTGGCGGGGGTGAGCGTATATTCGAACTACATC
CTATTCGTTTTCGCGCGCACCTTGCAAGGCATCGGGCCTGCGATGCTCCT
TCCCAATGGCCTGGCGCTGCTGGGTGCGACGTACCGACCGGGAAAGAAGA
AGTATATGGTCTTCTCACTCTTCGGGGCTACCGCGCCAAACGGCGCCGTT
TTGGGAGCCATCTTTGCGTCGCTATTCTCCCAGCTCGCTTGGTGGCCGTG
GACTTTCTGGGCCATGGCGATCTATTGTTTTGTATTGGCAATTATGTCGT
TTCTTGCGATTCCTCCTTCCCCGTCGATTGCGCAGGGCATGTCGCTCGGA
CAGCTGGTGTCTGAATTAGATGTGGTCGGGGCATTCTTTGGAGTTGCAGG
CCTGGTTCTTATTAATATCGCCTGGAACCAGGCGCCCGTGGTGGGATGGC
AAGAGGCGTATGTGTACGTCCTGCTGATCATTGGGGCTCTGATTCTGGCC
ACGTTCTTCGTCTGGGAGATCAAGTACGCGTCCAAGCCACTCATCCCGTT
CCATGCGCTGGATCTCGATGTCTGCTTTATTCTGGGCTGCATTGCATGTG
GCTGGGCCAGTTTCGGAATCTGGGTTTACTACTTCTGGCGGTTCTTGGAG
AATATCCGAGGCATATCGCCGTTGCTGGCATCGGCGCAGTTTATCCCGCC
AGCCTTGTCTGGACTGACAGCCTCCTTCACGACGGGGCTTCTCATGGCAA
GATTGCGGCCCGGCTGGATCATGCTGATGGCCATGGTGGCTTTCACCCTG
GGTAATATCTTTTCGGCTATCGCTCCGGTTCACCAGACGTATTGGGCGTT
GGCCTTTGTGACGCTGTTGGTCACTCCGTGGGGAATGGACATGTCGTTCC
CTGCAGCTACAGTCGTCTTATCGAATGCGGTTGGGCGTCGCCATCAGGGC
GTTGCGGCGTCGTTGGTCACGACGGTTGTCAATTATAGTATCTCGCTGGG
ACTTGGCTTTGCGGGCACGGTCGAGGTGCATGTGAACAACGGTGGCCAGA
CCTTCCATGACACGCTCATAGGATATCGAGGAGCATTGTATATGGGCATC
GGACTGGGTGGGCTTGGAGTTGCCATCAGTCTGCTCTATCTTATTAAGAG
CAGACCGAGACCGGGCCAAGAAGAGAACCAGCTGGAAAAGGCAGCCGAAT
AATCGTTATTCAATAATTCGGGGGTGAATATAGAGATAGAGCATATATAA
TCCGGCGTGCTCAATAGACATAGCCACAGAGCTCGCCTGCATAGTGGCAA
ACCAAAAATATTATTCAATTAATAGCTTGGATTTGACACCCC back to topCoding sequence (CDS) from alignment at ch8:3781086..3783327+ >KJC3_012508-T1 ID=KJC3_012508-T1|Name=KJC3_012508-T1|organism=Aspergillus niger KJC3|type=CDS|length=1440bp|location=Sequence derived from alignment at ch8:3781086..3783327+ (Aspergillus niger KJC3)
ATGAGCTCGTCTTCGTCTTCGTGGTGTGTCATGTCGCAATTCATGACGCA
GGCCGCGCTCGGAAATACGCTCGCCCCACTTGAGATCATCAGTGACAGCT
TCGGCATCACCAACCCTGGCATCTCCAGCTGGCTGATCGCAGGGTACTCC
CTAACTGTCGGTACATTTATTCTTTTCTTTGGCCGCTGTGGCGATATTTT
CGGATACCGTATCTTGTATATCATCGGATGGATATGGTTCGCGATCTGGT
CCCTGGTGGCGGGGGTGAGCGTATATTCGAACTACATCCTATTCGTTTTC
GCGCGCACCTTGCAAGGCATCGGGCCTGCGATGCTCCTTCCCAATGGCCT
GGCGCTGCTGGGTGCGACGTACCGACCGGGAAAGAAGAAGTATATGGTCT
TCTCACTCTTCGGGGCTACCGCGCCAAACGGCGCCGTTTTGGGAGCCATC
TTTGCGTCGCTATTCTCCCAGCTCGCTTGGTGGCCGTGGACTTTCTGGGC
CATGGCGATCTATTGTTTTGTATTGGCAATTATGTCGTTTCTTGCGATTC
CTCCTTCCCCGTCGATTGCGCAGGGCATGTCGCTCGGACAGCTGGTGTCT
GAATTAGATGTGGTCGGGGCATTCTTTGGAGTTGCAGGCCTGGTTCTTAT
TAATATCGCCTGGAACCAGGCGCCCGTGGTGGGATGGCAAGAGGCGTATG
TGTACGTCCTGCTGATCATTGGGGCTCTGATTCTGGCCACGTTCTTCGTC
TGGGAGATCAAGTACGCGTCCAAGCCACTCATCCCGTTCCATGCGCTGGA
TCTCGATGTCTGCTTTATTCTGGGCTGCATTGCATGTGGCTGGGCCAGTT
TCGGAATCTGGGTTTACTACTTCTGGCGGTTCTTGGAGAATATCCGAGGC
ATATCGCCGTTGCTGGCATCGGCGCAGTTTATCCCGCCAGCCTTGTCTGG
ACTGACAGCCTCCTTCACGACGGGGCTTCTCATGGCAAGATTGCGGCCCG
GCTGGATCATGCTGATGGCCATGGTGGCTTTCACCCTGGGTAATATCTTT
TCGGCTATCGCTCCGGTTCACCAGACGTATTGGGCGTTGGCCTTTGTGAC
GCTGTTGGTCACTCCGTGGGGAATGGACATGTCGTTCCCTGCAGCTACAG
TCGTCTTATCGAATGCGGTTGGGCGTCGCCATCAGGGCGTTGCGGCGTCG
TTGGTCACGACGGTTGTCAATTATAGTATCTCGCTGGGACTTGGCTTTGC
GGGCACGGTCGAGGTGCATGTGAACAACGGTGGCCAGACCTTCCATGACA
CGCTCATAGGATATCGAGGAGCATTGTATATGGGCATCGGACTGGGTGGG
CTTGGAGTTGCCATCAGTCTGCTCTATCTTATTAAGAGCAGACCGAGACC
GGGCCAAGAAGAGAACCAGCTGGAAAAGGCAGCCGAATAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0022857 | transmembrane transporter activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012508-T1.utr5p1 | KJC3_012508-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012508-T1.utr3p1 | KJC3_012508-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036259 |
| DBxref | InterPro:IPR020846 |
| DBxref | InterPro:IPR011701 |
| DBxref | PFAM:PF07690 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:3781086..3783327 + |
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