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KJC3_012511-T1, KJC3_012511-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012511-T1
Unique NameKJC3_012511-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:3789633..3790682+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012511-T1 ID=KJC3_012511-T1|Name=KJC3_012511-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1050bp|location=Sequence derived from alignment at ch8:3789633..3790682+ (Aspergillus niger KJC3)
GTCGACAATCAATCGCGGTCCTTCGCGCCATCGCCCATCATGTGTACGTG
AATGACCCTGAAATCGGATTTCCAACCCTGCCTATTTGATTTCCGTCGCT
GTTCGTTTTTTGCCGGTCATTTTTGGAGGAAATATTCATCGCTGGGGTTT
TGGAGAAAAGAGAAAAGGACTATCATCGCGGATATAGACGGCAGCAACAG
CAGCGACGGAATCATTGAATATTTTTCATCATCATCATGGCAACAACCGA
TTTCTTAAGACAGAAAGGCTGACTTGCGGTTTTTGGAATTTTTTAGCGCT
CGTGTCCGGCGAGAAGACGAACTTCCAGTACATTCTGCGTCTGCTCAACA
CCAATGTTGACGGCAAGCAGAAGATCATGTACGCCTTGACCCAGATCAAG
GGTGTTGGTCGCCGTTACTCCAACTTGGTCTGCAAGAAGGCCGACGTTGA
CCTCAGCAAGCGGTACGTTTACACTACACTACATTTCTCGATGGTTCGAA
TGCGAGGCAGGGGATAAAAGAGTGGGAGTGGATTCCACGGACAAGAGAAG
GGAGAAGAGCAAACACCACGAGTTTGAAAGGGCAGGAGATACAAGAACAG
CCAAGTTGACTTTCCTACTTTCTACAGCGCTGGTGAACTCACCACCGAAG
AGCTCGAGCGTATCGTCACCATCCTCCAGAGCCCCACCCAGTACAAGATC
CCCACCTGGTTCCTCAACAGACAGCGCGACATCACCGATGGCAAGGACTC
CCAGGTCGTCTCCAACTCCCTCGACAGCAAGATCCGTGAGGATCTCGAGC
GCCTGAAGAAGATCCGCTCCCACCGTGGTCTCCGTCACTACTGGGGTCTC
CGTGTCCGCGGTCAGCACACCAAGACCACCGGTCGTCGTGGACGCACCGT
CGGTGTCAGCAAGAAGAAGAACTAAAAAAACAATCATCGGGGTCATATCA
TCTGCGTTTGTTTCTTCGTACTTGCTGGAGTGGATCGTGGGAAGGATGGA
TTCCTTTCGTGTATCTTGGTGTGGATTTTTTTAACGAAATCTTCCCTGGG
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Coding sequence (CDS) from alignment at ch8:3789633..3790682+

>KJC3_012511-T1 ID=KJC3_012511-T1|Name=KJC3_012511-T1|organism=Aspergillus niger KJC3|type=CDS|length=1404bp|location=Sequence derived from alignment at ch8:3789633..3790682+ (Aspergillus niger KJC3)
ATGTCGCTCGTGTCCGGCGAGAAGACGAACTTCCAGTACATTCTGCGTCT
GCTCAACACCAATGTTGACGGCAAGCAGAAGATCATGTACGCCTTGACCC
AGATCAAGGGTGTTGGTCGCCGTTACTCCAACTTGGTCTGCAAGAAGGCC
GACGTTGACCTCAGCAAGCGCGCTGGTGAACTCACCACCGAAGAGCTCGA
GCGTATCGTCACCATCCTCCAGAGCCCCACCCAGTACAAGATCCCCACCT
GGTTCCTCAACAGACAGCGCGACATCACCGATGGCAAGGACTCCCAGGTC
GTCTCCAACTCCCTCGACAGCAAGATCCGTGAGGATCTCGAGCGCCTGAA
GAAGATCCGCTCCCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCC
GCGGTCAGCACACCAAGACCACCGGTCGTCGTGGACGCACCGTCGGTGTC
AGCAAGAAGAAGAACTAAATGTCGCTCGTGTCCGGCGAGAAGACGAACTT
CCAGTACATTCTGCGTCTGCTCAACACCAATGTTGACGGCAAGCAGAAGA
TCATGTACGCCTTGACCCAGATCAAGGGTGTTGGTCGCCGTTACTCCAAC
TTGGTCTGCAAGAAGGCCGACGTTGACCTCAGCAAGCGCGCTGGTGAACT
CACCACCGAAGAGCTCGAGCGTATCGTCACCATCCTCCAGAGCCCCACCC
AGTACAAGATCCCCACCTGGTTCCTCAACAGACAGCGCGACATCACCGAT
GGCAAGGACTCCCAGGTCGTCTCCAACTCCCTCGACAGCAAGATCCGTGA
GGATCTCGAGCGCCTGAAGAAGATCCGCTCCCACCGTGGTCTCCGTCACT
ACTGGGGTCTCCGTGTCCGCGGTCAGCACACCAAGACCACCGGTCGTCGT
GGACGCACCGTCGGTGTCAGCAAGAAGAAGAACTAAATGTCGCTCGTGTC
CGGCGAGAAGACGAACTTCCAGTACATTCTGCGTCTGCTCAACACCAATG
TTGACGGCAAGCAGAAGATCATGTACGCCTTGACCCAGATCAAGGGTGTT
GGTCGCCGTTACTCCAACTTGGTCTGCAAGAAGGCCGACGTTGACCTCAG
CAAGCGCGCTGGTGAACTCACCACCGAAGAGCTCGAGCGTATCGTCACCA
TCCTCCAGAGCCCCACCCAGTACAAGATCCCCACCTGGTTCCTCAACAGA
CAGCGCGACATCACCGATGGCAAGGACTCCCAGGTCGTCTCCAACTCCCT
CGACAGCAAGATCCGTGAGGATCTCGAGCGCCTGAAGAAGATCCGCTCCC
ACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCACACC
AAGACCACCGGTCGTCGTGGACGCACCGTCGGTGTCAGCAAGAAGAAGAA
CTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS18KJC3_012511Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012511-T1KJC3_012511-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012511-T1.utr5p1KJC3_012511-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012511-T1.exon1KJC3_012511-T1.exon1Aspergillus niger KJC3exon
KJC3_012511-T1.exon2KJC3_012511-T1.exon2Aspergillus niger KJC3exon
KJC3_012511-T1.exon3KJC3_012511-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012511-T1.cdsKJC3_012511-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012511-T1.utr3p1KJC3_012511-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09264YEG
DBxrefInterPro:IPR010979
DBxrefInterPro:IPR018269
DBxrefInterPro:IPR027437
DBxrefInterPro:IPR001892
DBxrefPFAM:PF00416
Productribosomal 40S subunit protein S18B
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:3789633..3790682 +
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