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KJC3_012576-T2, KJC3_012576-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012576-T2
Unique NameKJC3_012576-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:3965927..3967560-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012576-T2 ID=KJC3_012576-T2|Name=KJC3_012576-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1634bp|location=Sequence derived from alignment at ch8:3965927..3967560- (Aspergillus niger KJC3)
TCTCTCAAACATATCTTCTTCGAAACTGGACTCCCCGGCTCTCTGATTCT
CCCAGATGCAGTGCCTGCGATCATTTCTAAACCTTGTAATCAACATCAAG
CACTATGACTGCCGCAAGACGAAAACGTTTACTCAATAAGGTTCAGAATT
ATCCAAAAAGAAGAAAGAATGGACCTGATCCGTTCACCATATTAAATGAT
GATGGCGGAACATGGTAAGTAGTATTATTCTCCTTCCCACTTTTTCCTTA
TGATAGTCCTTTTGAGACACTCGTAACAGGACTAACAATGAAGGCAGTGA
ATCTCCAATCGTCCCAGATCCTCATGAGACGATCAGAAATGACACCACCA
CACAACCAGATATTGTAGACTCAATATCTTCCAACGAGGTCGAAGACATA
CTGCGACTCGACCTCGGAACTAAAGAAGGATTATCTCGCACTGAGGCCTT
CGGTGCGTTTCTCAACGCGGCTCTATCTGACAGGACCTCCTCAACCAGAA
GATTGCGCCCAAGGCAACCACGATTTCCAGGTGTCACCGAGAATACGTCC
ATGACAAACCTCGAACGTGCAACGGAGTGTCTGAGCACGCTTGCGCAGAC
ATTTAGCTCAGCCCAACGGATGGACTTCGACGTTGAGAGGCTAACAAAAG
AGGCCCCAACTAACGGGGATGGTGGGAAAGGAAAATCACAATGGTCACCT
CTTCATTTTGCGGCTCAGAGAGGTAGTGCCAGATTGTGTCAAGCGCTTTT
GGACAAGGACGCATTTATAGACGCCAGGGAAGACGACTCCTGGACACCCC
TGATGCTAGCGGCTCAGAACGGTCATTATGATGCGTGCTGTACCCTGATC
GAGCGCGGAGCCGATGTCAATGCAGTTGCAGAGGACTCCCATACAGCGTT
ACTGCAAGCTGTCGCGACTGAGAAGATCGAAGTCGTCCAGCTCCTGCTCA
GCCATGGGGCTGATATAAGAGCACATTTGAAAGGCCACAGTTGCGTTGAA
ATGGCAGCCTACCATTCGAACCCAGACCTCCTTCGATTATTGATTCAGCA
AGATCGTGGTAGTGTGAATGCCCCTGGTGACCGACAATGGACTCCACTTC
ACTTCACCGCTCAGTTCGATAAAGAGCATACCCTAGAAACGGCACAGATA
CTCATAGACGCTGGTGCCAATGTTAATTCTCGTGCCGACCTGGGAGTTAC
GCCTCTTTTCCTGGCTGTTCAATCGAATCGGCTCGACTTGGTTAAACTCC
TTGTCGACAAAGGCGCTGAGATTAACGTGTGCACCGAACGAGATATTACC
CCGCTGGAAAGAGCAATAGGCAATTCTAACATTTCTATTATTGATTTCCT
CATCGACCAAGGAGCCTGGACAGATCACGTGGATAGAAGAGGTTTCAATA
TCGTTCATATTGGAGCGATGCAAGGGGATGTGGCTGTTCTAGAGAGAGTT
CTCAAGACAGGTGCCGATATAGAGGCGTCTTCGACTGACGGGAAGAAACT
TCGGCCGATACATGTCGCCATCAATAACGACAATGAAGAGATCGCGTTGA
CTCTATTAGAACATGGAGCGCAGCCATGAGGGCCTCTCTCCCTCTCTCTC
TCAAATGTTGACTCTCTATTTCACGACTTTTTCT
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Coding sequence (CDS) from alignment at ch8:3965927..3967560-

>KJC3_012576-T2 ID=KJC3_012576-T2|Name=KJC3_012576-T2|organism=Aspergillus niger KJC3|type=CDS|length=2610bp|location=Sequence derived from alignment at ch8:3965927..3967560- (Aspergillus niger KJC3)
GCAGTGAATCTCCAATCGTCCCAGATCCTCATGAGACGATCAGAAATGAC
ACCACCACACAACCAGATATTGTAGACTCAATATCTTCCAACGAGGTCGA
AGACATACTGCGACTCGACCTCGGAACTAAAGAAGGATTATCTCGCACTG
AGGCCTTCGGTGCGTTTCTCAACGCGGCTCTATCTGACAGGACCTCCTCA
ACCAGAAGATTGCGCCCAAGGCAACCACGATTTCCAGGTGTCACCGAGAA
TACGTCCATGACAAACCTCGAACGTGCAACGGAGTGTCTGAGCACGCTTG
CGCAGACATTTAGCTCAGCCCAACGGATGGACTTCGACGTTGAGAGGCTA
ACAAAAGAGGCCCCAACTAACGGGGATGGTGGGAAAGGAAAATCACAATG
GTCACCTCTTCATTTTGCGGCTCAGAGAGGTAGTGCCAGATTGTGTCAAG
CGCTTTTGGACAAGGACGCATTTATAGACGCCAGGGAAGACGACTCCTGG
ACACCCCTGATGCTAGCGGCTCAGAACGGTCATTATGATGCGTGCTGTAC
CCTGATCGAGCGCGGAGCCGATGTCAATGCAGTTGCAGAGGACTCCCATA
CAGCGTTACTGCAAGCTGTCGCGACTGAGAAGATCGAAGTCGTCCAGCTC
CTGCTCAGCCATGGGGCTGATATAAGAGCACATTTGAAAGGCCACAGTTG
CGTTGAAATGGCAGCCTACCATTCGAACCCAGACCTCCTTCGATTATTGA
TTCAGCAAGATCGTGGTAGTGTGAATGCCCCTGGTGACCGACAATGGACT
CCACTTCACTTCACCGCTCAGTTCGATAAAGAGCATACCCTAGAAACGGC
ACAGATACTCATAGACGCTGGTGCCAATGTTAATTCTCGTGCCGACCTGG
GAGTTACGCCTCTTTTCCTGGCTGTTCAATCGAATCGGCTCGACTTGGTT
AAACTCCTTGTCGACAAAGGCGCTGAGATTAACGTGTGCACCGAACGAGA
TATTACCCCGCTGGAAAGAGCAATAGGCAATTCTAACATTTCTATTATTG
ATTTCCTCATCGACCAAGGAGCCTGGACAGATCACGTGGATAGAAGAGGT
TTCAATATCGTTCATATTGGAGCGATGCAAGGGGATGTGGCTGTTCTAGA
GAGAGTTCTCAAGACAGGTGCCGATATAGAGGCGTCTTCGACTGACGGGA
AGAAACTTCGGCCGATACATGTCGCCATCAATAACGACAATGAAGAGATC
GCGTTGACTCTATTAGAACATGGAGCGCAGCCATGAATGATGATGGCGGA
ACATGGCAGTGAATCTCCAATCGTCCCAGATCCTCATGAGACGATCAGAA
ATGACACCACCACACAACCAGATATTGTAGACTCAATATCTTCCAACGAG
GTCGAAGACATACTGCGACTCGACCTCGGAACTAAAGAAGGATTATCTCG
CACTGAGGCCTTCGGTGCGTTTCTCAACGCGGCTCTATCTGACAGGACCT
CCTCAACCAGAAGATTGCGCCCAAGGCAACCACGATTTCCAGGTGTCACC
GAGAATACGTCCATGACAAACCTCGAACGTGCAACGGAGTGTCTGAGCAC
GCTTGCGCAGACATTTAGCTCAGCCCAACGGATGGACTTCGACGTTGAGA
GGCTAACAAAAGAGGCCCCAACTAACGGGGATGGTGGGAAAGGAAAATCA
CAATGGTCACCTCTTCATTTTGCGGCTCAGAGAGGTAGTGCCAGATTGTG
TCAAGCGCTTTTGGACAAGGACGCATTTATAGACGCCAGGGAAGACGACT
CCTGGACACCCCTGATGCTAGCGGCTCAGAACGGTCATTATGATGCGTGC
TGTACCCTGATCGAGCGCGGAGCCGATGTCAATGCAGTTGCAGAGGACTC
CCATACAGCGTTACTGCAAGCTGTCGCGACTGAGAAGATCGAAGTCGTCC
AGCTCCTGCTCAGCCATGGGGCTGATATAAGAGCACATTTGAAAGGCCAC
AGTTGCGTTGAAATGGCAGCCTACCATTCGAACCCAGACCTCCTTCGATT
ATTGATTCAGCAAGATCGTGGTAGTGTGAATGCCCCTGGTGACCGACAAT
GGACTCCACTTCACTTCACCGCTCAGTTCGATAAAGAGCATACCCTAGAA
ACGGCACAGATACTCATAGACGCTGGTGCCAATGTTAATTCTCGTGCCGA
CCTGGGAGTTACGCCTCTTTTCCTGGCTGTTCAATCGAATCGGCTCGACT
TGGTTAAACTCCTTGTCGACAAAGGCGCTGAGATTAACGTGTGCACCGAA
CGAGATATTACCCCGCTGGAAAGAGCAATAGGCAATTCTAACATTTCTAT
TATTGATTTCCTCATCGACCAAGGAGCCTGGACAGATCACGTGGATAGAA
GAGGTTTCAATATCGTTCATATTGGAGCGATGCAAGGGGATGTGGCTGTT
CTAGAGAGAGTTCTCAAGACAGGTGCCGATATAGAGGCGTCTTCGACTGA
CGGGAAGAAACTTCGGCCGATACATGTCGCCATCAATAACGACAATGAAG
AGATCGCGTTGACTCTATTAGAACATGGAGCGCAGCCATGAATGATGATG
GCGGAACATG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_012576KJC3_012576Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012576-T2KJC3_012576-T2-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012576-T2.cdsKJC3_012576-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012576-T2.utr3p1KJC3_012576-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012576-T2.exon2KJC3_012576-T2.exon2Aspergillus niger KJC3exon
KJC3_012576-T2.exon1KJC3_012576-T2.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012576-T2.utr5p1KJC3_012576-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036770
DBxrefInterPro:IPR020683
DBxrefInterPro:IPR002110
DBxrefPFAM:PF13857
DBxrefPFAM:PF13637
DBxrefPFAM:PF13606
DBxrefPFAM:PF12796
DBxrefPFAM:PF00023
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:3965927..3967560 -
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