You are here

Home

KJC3_012599-T1, KJC3_012599-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012599-T1
Unique NameKJC3_012599-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:4031293..4032608+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012599-T1 ID=KJC3_012599-T1|Name=KJC3_012599-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1316bp|location=Sequence derived from alignment at ch8:4031293..4032608+ (Aspergillus niger KJC3)
CCTCATTCCCACCTTTATCTTATAGTTATCTTGAAAGCGACACCAGTATG
CCATTTGAGAAGTTGCGGGAGAATACTCTTCCCGTAGCTGACACACAGGA
CAGTCGGGGACAGAAGACTATTCTTAACCTTATGTCTAAGTGAGGATTGC
ACCAAGTCAACTGAGACAACATCTCGTCTTACGATCCCTGAAAACTAATA
TCAACTGAAAGCCTGCATCTCAGCTCGGAATATAGTGATTTAAAGATCAT
TTGCAAAGACAAGATCTTCCCGGCTCATAAACTACTTGTTTGTCCCAGAT
CGAAGTATTTCCACCGGGCTTGCTTTGCCGGGTTCAAGGTGAAACCAAAT
ATGAGCAACTCCTTGCACTGAGACTGACAAGCTGCTATGGATGTTAGGAA
ACCAAAGGGTCGATTTGTTTGGACGACAAAAGCCCGGTCTTGATCGAGAA
GGTGCTGGAATTTCTGTACACGGGCAATTACACCCTCGGATACCGTACGA
CTAAAACGCTGACCCCACCGACCGATGACAATGAAGGGCCAAGAATGAAT
ACAAACCACACAAGAGACCCGTTAATATATTTTCCATCAAGGAGGCGTGC
CACAGACGAGTATGCGGCAGAAATGGAGGAGCTCGCCAATGATGCCGCTG
TAGCAGCCGTAGAAAATTCAGCGGATGGATTCGTTGATGGGTCACCGATG
AACAAGAAAGGTCCAAATGAGGAAGAGAATAACGTGGAGCCAGCTGTCGA
TATATTAGCTGACTGTCATCCATGCTACTTTCATGTACGCATGTATGGCG
AAGCGGATTACTTCATGATTGACGATTTGAAAATCAAAGCGGAGGAAAAA
GTCCTCGCGTCTTTGGTGAATTGCTCCGAAGTAGATTCCTTTTCGCAAAT
AATCGCGGAGCTCTATTCAGGACGAGCCGACTATGGAAGGCTACGGAAGC
TGGCGCTCAAAGTGATAGTCGACAACTTGCCGACCCTCAGAAAAGGATTC
ACCCCGGTGATAAATGCAAAGCTGATGGAATCTGTTCCTGATTTTGCTGT
TGATCTATGTCTACCGACAATAGACAAGTACGTGGGTGAGCCGCACATGA
GACCAAATCCATTTCCTACGGGTATTGAATACAAGGGGGTCATCTACACG
GTTCATTCGGTGGGGCTATAGCTCTCTCAGGTTAGTCATGGAACGATCTA
CAAACTATGGTAGTACACCTGTTTGGAGAGTGCAACTCGGATATCCTTCT
GGGAAACTTCATATTAGCGGGATACATTGTCTTCGTTCTAGATCTATACT
AAGCTCTTTAGTGCGT
back to top

Coding sequence (CDS) from alignment at ch8:4031293..4032608+

>KJC3_012599-T1 ID=KJC3_012599-T1|Name=KJC3_012599-T1|organism=Aspergillus niger KJC3|type=CDS|length=2979bp|location=Sequence derived from alignment at ch8:4031293..4032608+ (Aspergillus niger KJC3)
ATGCCATTTGAGAAGTTGCGGGAGAATACTCTTCCCGTAGCTGACACACA
GGACAGTCGGGGACAGAAGACTATTCTTAACCTTATGTCTAACCTGCATC
TCAGCTCGGAATATAGTGATTTAAAGATCATTTGCAAAGACAAGATCTTC
CCGGCTCATAAACTACTTGTTTGTCCCAGATCGAAGTATTTCCACCGGGC
TTGCTTTGCCGGGTTCAAGGAAACCAAAGGGTCGATTTGTTTGGACGACA
AAAGCCCGGTCTTGATCGAGAAGGTGCTGGAATTTCTGTACACGGGCAAT
TACACCCTCGGATACCGTACGACTAAAACGCTGACCCCACCGACCGATGA
CAATGAAGGGCCAAGAATGAATACAAACCACACAAGAGACCCGTTAATAT
ATTTTCCATCAAGGAGGCGTGCCACAGACGAGTATGCGGCAGAAATGGAG
GAGCTCGCCAATGATGCCGCTGTAGCAGCCGTAGAAAATTCAGCGGATGG
ATTCGTTGATGGGTCACCGATGAACAAGAAAGGTCCAAATGAGGAAGAGA
ATAACGTGGAGCCAGCTGTCGATATATTAGCTGACTGTCATCCATGCTAC
TTTCATGTACGCATGTATGGCGAAGCGGATTACTTCATGATTGACGATTT
GAAAATCAAAGCGGAGGAAAAAGTCCTCGCGTCTTTGGTGAATTGCTCCG
AAGTAGATTCCTTTTCGCAAATAATCGCGGAGCTCTATTCAGGACGAGCC
GACTATGGAAGGCTACGGAAGCTGGCGCTCAAAGTGATAGTCGACAACTT
GCCGACCCTCAGAAAAGGATTCACCCCGGTGATAAATGCAAAGCTGATGG
AATCTGTTCCTGATTTTGCTGTTGATCTATGTCTACCGACAATAGACAAG
TACGTGGGTGAGCCGCACATGAGACCAAATCCATTTCCTACGGGTATTGA
ATACAAGGGGGTCATCTACACGGTTCATTCGGTGGGGCTATAGATGCCAT
TTGAGAAGTTGCGGGAGAATACTCTTCCCGTAGCTGACACACAGGACAGT
CGGGGACAGAAGACTATTCTTAACCTTATGTCTAACCTGCATCTCAGCTC
GGAATATAGTGATTTAAAGATCATTTGCAAAGACAAGATCTTCCCGGCTC
ATAAACTACTTGTTTGTCCCAGATCGAAGTATTTCCACCGGGCTTGCTTT
GCCGGGTTCAAGGAAACCAAAGGGTCGATTTGTTTGGACGACAAAAGCCC
GGTCTTGATCGAGAAGGTGCTGGAATTTCTGTACACGGGCAATTACACCC
TCGGATACCGTACGACTAAAACGCTGACCCCACCGACCGATGACAATGAA
GGGCCAAGAATGAATACAAACCACACAAGAGACCCGTTAATATATTTTCC
ATCAAGGAGGCGTGCCACAGACGAGTATGCGGCAGAAATGGAGGAGCTCG
CCAATGATGCCGCTGTAGCAGCCGTAGAAAATTCAGCGGATGGATTCGTT
GATGGGTCACCGATGAACAAGAAAGGTCCAAATGAGGAAGAGAATAACGT
GGAGCCAGCTGTCGATATATTAGCTGACTGTCATCCATGCTACTTTCATG
TACGCATGTATGGCGAAGCGGATTACTTCATGATTGACGATTTGAAAATC
AAAGCGGAGGAAAAAGTCCTCGCGTCTTTGGTGAATTGCTCCGAAGTAGA
TTCCTTTTCGCAAATAATCGCGGAGCTCTATTCAGGACGAGCCGACTATG
GAAGGCTACGGAAGCTGGCGCTCAAAGTGATAGTCGACAACTTGCCGACC
CTCAGAAAAGGATTCACCCCGGTGATAAATGCAAAGCTGATGGAATCTGT
TCCTGATTTTGCTGTTGATCTATGTCTACCGACAATAGACAAGTACGTGG
GTGAGCCGCACATGAGACCAAATCCATTTCCTACGGGTATTGAATACAAG
GGGGTCATCTACACGGTTCATTCGGTGGGGCTATAGATGCCATTTGAGAA
GTTGCGGGAGAATACTCTTCCCGTAGCTGACACACAGGACAGTCGGGGAC
AGAAGACTATTCTTAACCTTATGTCTAACCTGCATCTCAGCTCGGAATAT
AGTGATTTAAAGATCATTTGCAAAGACAAGATCTTCCCGGCTCATAAACT
ACTTGTTTGTCCCAGATCGAAGTATTTCCACCGGGCTTGCTTTGCCGGGT
TCAAGGAAACCAAAGGGTCGATTTGTTTGGACGACAAAAGCCCGGTCTTG
ATCGAGAAGGTGCTGGAATTTCTGTACACGGGCAATTACACCCTCGGATA
CCGTACGACTAAAACGCTGACCCCACCGACCGATGACAATGAAGGGCCAA
GAATGAATACAAACCACACAAGAGACCCGTTAATATATTTTCCATCAAGG
AGGCGTGCCACAGACGAGTATGCGGCAGAAATGGAGGAGCTCGCCAATGA
TGCCGCTGTAGCAGCCGTAGAAAATTCAGCGGATGGATTCGTTGATGGGT
CACCGATGAACAAGAAAGGTCCAAATGAGGAAGAGAATAACGTGGAGCCA
GCTGTCGATATATTAGCTGACTGTCATCCATGCTACTTTCATGTACGCAT
GTATGGCGAAGCGGATTACTTCATGATTGACGATTTGAAAATCAAAGCGG
AGGAAAAAGTCCTCGCGTCTTTGGTGAATTGCTCCGAAGTAGATTCCTTT
TCGCAAATAATCGCGGAGCTCTATTCAGGACGAGCCGACTATGGAAGGCT
ACGGAAGCTGGCGCTCAAAGTGATAGTCGACAACTTGCCGACCCTCAGAA
AAGGATTCACCCCGGTGATAAATGCAAAGCTGATGGAATCTGTTCCTGAT
TTTGCTGTTGATCTATGTCTACCGACAATAGACAAGTACGTGGGTGAGCC
GCACATGAGACCAAATCCATTTCCTACGGGTATTGAATACAAGGGGGTCA
TCTACACGGTTCATTCGGTGGGGCTATAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_012599KJC3_012599Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012599-T1KJC3_012599-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012599-T1.utr5p1KJC3_012599-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012599-T1.exon1KJC3_012599-T1.exon1Aspergillus niger KJC3exon
KJC3_012599-T1.exon2KJC3_012599-T1.exon2Aspergillus niger KJC3exon
KJC3_012599-T1.exon3KJC3_012599-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012599-T1.cdsKJC3_012599-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012599-T1.utr3p1KJC3_012599-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR011333
DBxrefInterPro:IPR000210
DBxrefPFAM:PF00651
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:4031293..4032608 +
Powered by Drupal