You are here

Home

KJC3_012624-T1, KJC3_012624-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012624-T1
Unique NameKJC3_012624-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:4098435..4099981+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012624-T1 ID=KJC3_012624-T1|Name=KJC3_012624-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1547bp|location=Sequence derived from alignment at ch8:4098435..4099981+ (Aspergillus niger KJC3)
CCATCACCGGTAGAAATAACCTTCCCACTCTAACTCCTCCCTGTCCAACC
CCCTCGTTCTATCGAACTCCCCTCGGTCGCTTCGTCCATCGAGTGTCGCA
TCTCACTGTCGACTTTTAATTTCCGTCGACTTCTATCGCAGACTCTGTAT
CGCTTCTCTTCATCTCCAACCCCTCACATCACATCCAACCTTCATCATGG
CTGCTCAGGTACCGACCTTCAAGCTTGTCCTCGTCGGTGACGGTGGTACT
GGAAAGGCAAGTTAAAACAAGAATTTCTTATCCTATATGGCTTACCGGGT
GGAGGTGGCATGTCACCTCTTCGACGCCTCTTTATGCTCGACTGCATTCC
TGCCATGCGCGTTTACCCCTCTCTGTTGCCCGTCGTCTCTATCAACAGAA
AACTTCATCGCCCGCCCAACCTCACCCAGACAAGACATCATTACTGACTG
AGAATTTTCACTGCAGACCACCTTCGTCAAGCGCCACTTGACTGGCGAGT
TCGAGAAGAAGTACATCGCCACTCTCGGTGTCGAAGTGCACCCTCTCGCT
TTTAACACCGTATGCCCCGCCGGAAACCCCGCTTTGTCCATTCCGCCGTC
TTTGTGCCGGTCCGACTAACGCTTTTGCCAGAACCTGGGTAACATCCAGT
TCGACGTCTGGGACACTGCTGGTCAGGAGAAGTTCGGTGGTCTTCGCGAT
GGTTACTACATCAACGGACAGTGCGGTATCATCATGTTCGATGTTACCTC
CCGTATCACCTACAAGAACGTCCCCAACTGGCACCGTAAGTGCTTCCACA
AATCAGCACTCGAACCACGCGCAATCTGGATCAAATTGACAAATTCACTC
TAGGTGATCTCGTCCGTGTCTGCGAGGGTATCCCCATCGTGCTGTGCGGT
AACAAGGTCGATGTTAAGGAGCGTAAGGTGAAGGCCAAGACCATCACCTT
CCACCGCAAGAAGAACCTCCAGTACTACGACATCTCCGCCAAGTCCAACT
ACAATTTCGAGAAGCCCTTCCTCTGGCTCGCTCGCAAGTTGGTCGGCAAC
CCCCAGCTGGTAAGTCAGACACGGTCATTGGTCGCTTTCACTGGTGAGAC
TGGAAGCTAACAAGCATTTCCCAGGAATTCGTTGCTGCCCCCGCTCTTGC
TCCCCCCGAGGTCCAAGTCAACCCGGAGCTTCTGGCCCAGTACGAGAAGG
AGATGGACGCTGCTGCCAACATGCCCCTGCCCGACGAGGAGGACGCCGAT
TTGTAAACGCGCGATCAATGAAGGCTGGAACCAGAGCCTGGGTCACGAGC
TCGGGCTCGTGGCTGCTGTTCTGTCCCAATAACTGGGTACGTTATGCAAG
ATTTCAAATCACGATACAATGATAGCGGAGGGAGGAAATTAAGCCCGAGA
ACGGTCGGCATGATTATGCATTTGCAATATTTACCACTAGTAGTCTAGAC
TCTGATTATCTCTACAAAGTTCCTTTTTGATAACGGTGACACTGTTTATC
CGTCCATCGGCTATATCTGTTGGACAAAAAAGTTTACATACTCTCTA
back to top

Coding sequence (CDS) from alignment at ch8:4098435..4099981+

>KJC3_012624-T1 ID=KJC3_012624-T1|Name=KJC3_012624-T1|organism=Aspergillus niger KJC3|type=CDS|length=3225bp|location=Sequence derived from alignment at ch8:4098435..4099981+ (Aspergillus niger KJC3)
ATGGCTGCTCAGGTACCGACCTTCAAGCTTGTCCTCGTCGGTGACGGTGG
TACTGGAAAGACCACCTTCGTCAAGCGCCACTTGACTGGCGAGTTCGAGA
AGAAGTACATCGCCACTCTCGGTGTCGAAGTGCACCCTCTCGCTTTTAAC
ACCAACCTGGGTAACATCCAGTTCGACGTCTGGGACACTGCTGGTCAGGA
GAAGTTCGGTGGTCTTCGCGATGGTTACTACATCAACGGACAGTGCGGTA
TCATCATGTTCGATGTTACCTCCCGTATCACCTACAAGAACGTCCCCAAC
TGGCACCGTGATCTCGTCCGTGTCTGCGAGGGTATCCCCATCGTGCTGTG
CGGTAACAAGGTCGATGTTAAGGAGCGTAAGGTGAAGGCCAAGACCATCA
CCTTCCACCGCAAGAAGAACCTCCAGTACTACGACATCTCCGCCAAGTCC
AACTACAATTTCGAGAAGCCCTTCCTCTGGCTCGCTCGCAAGTTGGTCGG
CAACCCCCAGCTGGAATTCGTTGCTGCCCCCGCTCTTGCTCCCCCCGAGG
TCCAAGTCAACCCGGAGCTTCTGGCCCAGTACGAGAAGGAGATGGACGCT
GCTGCCAACATGCCCCTGCCCGACGAGGAGGACGCCGATTTGTAAATGGC
TGCTCAGGTACCGACCTTCAAGCTTGTCCTCGTCGGTGACGGTGGTACTG
GAAAGACCACCTTCGTCAAGCGCCACTTGACTGGCGAGTTCGAGAAGAAG
TACATCGCCACTCTCGGTGTCGAAGTGCACCCTCTCGCTTTTAACACCAA
CCTGGGTAACATCCAGTTCGACGTCTGGGACACTGCTGGTCAGGAGAAGT
TCGGTGGTCTTCGCGATGGTTACTACATCAACGGACAGTGCGGTATCATC
ATGTTCGATGTTACCTCCCGTATCACCTACAAGAACGTCCCCAACTGGCA
CCGTGATCTCGTCCGTGTCTGCGAGGGTATCCCCATCGTGCTGTGCGGTA
ACAAGGTCGATGTTAAGGAGCGTAAGGTGAAGGCCAAGACCATCACCTTC
CACCGCAAGAAGAACCTCCAGTACTACGACATCTCCGCCAAGTCCAACTA
CAATTTCGAGAAGCCCTTCCTCTGGCTCGCTCGCAAGTTGGTCGGCAACC
CCCAGCTGGAATTCGTTGCTGCCCCCGCTCTTGCTCCCCCCGAGGTCCAA
GTCAACCCGGAGCTTCTGGCCCAGTACGAGAAGGAGATGGACGCTGCTGC
CAACATGCCCCTGCCCGACGAGGAGGACGCCGATTTGTAAATGGCTGCTC
AGGTACCGACCTTCAAGCTTGTCCTCGTCGGTGACGGTGGTACTGGAAAG
ACCACCTTCGTCAAGCGCCACTTGACTGGCGAGTTCGAGAAGAAGTACAT
CGCCACTCTCGGTGTCGAAGTGCACCCTCTCGCTTTTAACACCAACCTGG
GTAACATCCAGTTCGACGTCTGGGACACTGCTGGTCAGGAGAAGTTCGGT
GGTCTTCGCGATGGTTACTACATCAACGGACAGTGCGGTATCATCATGTT
CGATGTTACCTCCCGTATCACCTACAAGAACGTCCCCAACTGGCACCGTG
ATCTCGTCCGTGTCTGCGAGGGTATCCCCATCGTGCTGTGCGGTAACAAG
GTCGATGTTAAGGAGCGTAAGGTGAAGGCCAAGACCATCACCTTCCACCG
CAAGAAGAACCTCCAGTACTACGACATCTCCGCCAAGTCCAACTACAATT
TCGAGAAGCCCTTCCTCTGGCTCGCTCGCAAGTTGGTCGGCAACCCCCAG
CTGGAATTCGTTGCTGCCCCCGCTCTTGCTCCCCCCGAGGTCCAAGTCAA
CCCGGAGCTTCTGGCCCAGTACGAGAAGGAGATGGACGCTGCTGCCAACA
TGCCCCTGCCCGACGAGGAGGACGCCGATTTGTAAATGGCTGCTCAGGTA
CCGACCTTCAAGCTTGTCCTCGTCGGTGACGGTGGTACTGGAAAGACCAC
CTTCGTCAAGCGCCACTTGACTGGCGAGTTCGAGAAGAAGTACATCGCCA
CTCTCGGTGTCGAAGTGCACCCTCTCGCTTTTAACACCAACCTGGGTAAC
ATCCAGTTCGACGTCTGGGACACTGCTGGTCAGGAGAAGTTCGGTGGTCT
TCGCGATGGTTACTACATCAACGGACAGTGCGGTATCATCATGTTCGATG
TTACCTCCCGTATCACCTACAAGAACGTCCCCAACTGGCACCGTGATCTC
GTCCGTGTCTGCGAGGGTATCCCCATCGTGCTGTGCGGTAACAAGGTCGA
TGTTAAGGAGCGTAAGGTGAAGGCCAAGACCATCACCTTCCACCGCAAGA
AGAACCTCCAGTACTACGACATCTCCGCCAAGTCCAACTACAATTTCGAG
AAGCCCTTCCTCTGGCTCGCTCGCAAGTTGGTCGGCAACCCCCAGCTGGA
ATTCGTTGCTGCCCCCGCTCTTGCTCCCCCCGAGGTCCAAGTCAACCCGG
AGCTTCTGGCCCAGTACGAGAAGGAGATGGACGCTGCTGCCAACATGCCC
CTGCCCGACGAGGAGGACGCCGATTTGTAAATGGCTGCTCAGGTACCGAC
CTTCAAGCTTGTCCTCGTCGGTGACGGTGGTACTGGAAAGACCACCTTCG
TCAAGCGCCACTTGACTGGCGAGTTCGAGAAGAAGTACATCGCCACTCTC
GGTGTCGAAGTGCACCCTCTCGCTTTTAACACCAACCTGGGTAACATCCA
GTTCGACGTCTGGGACACTGCTGGTCAGGAGAAGTTCGGTGGTCTTCGCG
ATGGTTACTACATCAACGGACAGTGCGGTATCATCATGTTCGATGTTACC
TCCCGTATCACCTACAAGAACGTCCCCAACTGGCACCGTGATCTCGTCCG
TGTCTGCGAGGGTATCCCCATCGTGCTGTGCGGTAACAAGGTCGATGTTA
AGGAGCGTAAGGTGAAGGCCAAGACCATCACCTTCCACCGCAAGAAGAAC
CTCCAGTACTACGACATCTCCGCCAAGTCCAACTACAATTTCGAGAAGCC
CTTCCTCTGGCTCGCTCGCAAGTTGGTCGGCAACCCCCAGCTGGAATTCG
TTGCTGCCCCCGCTCTTGCTCCCCCCGAGGTCCAAGTCAACCCGGAGCTT
CTGGCCCAGTACGAGAAGGAGATGGACGCTGCTGCCAACATGCCCCTGCC
CGACGAGGAGGACGCCGATTTGTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006913nucleocytoplasmic transport
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
GSP1KJC3_012624Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012624-T1KJC3_012624-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012624-T1.utr5p1KJC3_012624-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012624-T1.exon1KJC3_012624-T1.exon1Aspergillus niger KJC3exon
KJC3_012624-T1.exon2KJC3_012624-T1.exon2Aspergillus niger KJC3exon
KJC3_012624-T1.exon3KJC3_012624-T1.exon3Aspergillus niger KJC3exon
KJC3_012624-T1.exon4KJC3_012624-T1.exon4Aspergillus niger KJC3exon
KJC3_012624-T1.exon5KJC3_012624-T1.exon5Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012624-T1.cdsKJC3_012624-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012624-T1.utr3p1KJC3_012624-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09264LKR
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR005225
DBxrefInterPro:IPR001806
DBxrefInterPro:IPR002041
DBxrefPFAM:PF08477
DBxrefPFAM:PF00071
DBxrefPFAM:PF00025
ProductGTP-binding nuclear protein gsp1/Ran
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:4098435..4099981 +
Powered by Drupal