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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:4135841..4139108+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012637-T2 ID=KJC3_012637-T2|Name=KJC3_012637-T2|organism=Aspergillus niger KJC3|type=mRNA|length=3268bp|location=Sequence derived from alignment at ch8:4135841..4139108+ (Aspergillus niger KJC3) CTGGGGTCTACAGGGCCCCATTTCATCCCAGCTACCTTCTTGCCGTCTCC
TCGGCCTGCGCACGGAACTCCACTCCCTGTAGGTTTCCAAGATTACCGCT
TAACCGTTGGATCTATCAAATACAGCGGTGACGCGAAAATCTCCAGCTGT
GATGGCTCACTTGGTCCAGAGTGAGCTTTCCCGTCCCAGGGGCCGGTATT
CTAACGGCTCAGTAAGGACATGTCAGAACTGTGCCAGAGCAAAGATACGG
TGCAATCGCCACGGGGCTACGGGGAGTTGCGAACGGTGAGCTTGTCTGAG
CGACCTGATTGTTTGGTGGGCTTACTAGTTCTAGATGCGAACGGCTGGGG
AAAGAGTGTCATTTCCCAGAAACCCGAAGCACAAATGGAGGGACCAAGAG
AGAGAGCAAGGACAGGTTAGTTGCGAGCCACGGACAAGTAGGTCGCCTTT
TAACCAAGCATAGGAGGATCGATCTACTCGAAGCCAAAGTCGATCAGCTG
CTAGCGACGTCGGTATCTCCAAGCCTGGTGCGTCGAACACCCTCAATTGC
GCTATACAAAGAGACTAACCGTGTCTTAAGAGGGGTAACAGCACGGCCAA
TGGGAGCCCTGCAAGCACTGTTTCGCAGTCCAAGGATGCCATTGACAAAG
GCTTGCTTACCGTGGAGGCCGCCAACATGCTGCTTAATGAATTTCGGACG
ACACTAATGCCTCACTGTCCATTCGTAGTCGTCCCACCACAGACCTCTGC
CGAAAGCCTAAGGAAAGACAAGCCGTTTCTCTTCCTTACTATCTTGACGG
CTACTCTGTATGACAACATGCCTCTGCAGCGTATGCTCGAAAAAGAGGTG
AAGAAGAAGGTTAGCGACTGCATGATTTACGATGGACCCATCTCATTCGA
GGTGCTGCAAGGGCTGCTAGTCCACATTGCATGGTACGCCTGATATTCCA
TGTCCGAACACTGAGCTGACAAGTTTAGGTGTCAATATCATTCACGGCCA
CGCCGGTTCTCTCAATATCTACACCTTGCGATCAGCATTATCACGGACCT
GCAACTGGACCGTGCGCATGAGTATCGACTCTGGAGGACTCGAGTGAACT
TTAATCCTGAAGAACACAAAGAGTCGGTATCTTGGGGGCACGATGAAAGA
CGGGCCGTCCTCGGTATCTTTTATTTCGCATCGAGGTAAGTCTAGGCATC
TACTCTACACAGTTACTACCTGCTGGGATTAACGGCTTGTAGCGTTTCGC
AGATCCTCCACAAACAATGCACCTTTCCGTATATGCCTTACTTTGATGAC
TGCTGCAAGCTTCTGGCCACAGATGCCGAGTATGCCTCCGACCAGCACCT
GCTTCATATAGTACAACTTCAACGATTATCGGAGAGGATTACTTTTATTT
CATCACAGAACATTCTAGGGACCCACGGCCCTGGCTCAAGCAGTGAGCGT
TCGTTTCGTGAGATGAAACTGGAGCTGGAGCAATATCGGGCTAGCCTACC
CTGTCCGTTGAATGAAAACAGTAAGCCGACCGATTATGAAAAGCCCATCG
ATGCTGATGACCCTCAGATATCCTTTACATGCAATACTATACTGCTGAAC
TGTATCTCTGCCAGATCAGCTTGTTCGATCATAAACCCAGTACACAAAGC
CCGCGGCGTGAAGTCCCATTTCAAATTGAGGCCCTACGTATGGGTCTCAT
TGCGGCCAAAGCGCTACTCGATCACTATGTCTGCCTCCCGTTGCGCAGCG
AAATGGCGTTTAACAACGCCATATGGATTCAGATCGGCTTCGCGCTGACT
CTGGCGTGCAAGCTTGTTGTAGCAGCATCAGAGCCTTCGATACAGCCTCA
CACAGCGGAGTTGTGCCGTGCGCTTGACATATCCAGCATGCTCAGTCGGT
GTATCCTCCGCATCCAGGCGCTAGTTACGTCTAGCTTGGATGCCTCCGGT
GACCGAGATGTCTTCTACCACTATGAACAGCGACTGAAACGAGTTCAGTG
GTGGTTTGGAAACCGGATGTTATCAAAGAATAAGAATGATTCCATTCAAC
CTGCGGTGCAACCAACTGACGACATGAGCTCATCCACAGCTGAGAACAGT
CACGTTGAATCATCGCAGCTGCCACTGGACGGATTAAATGATTATACGAT
GATACCCCCCGAAGTGTACGATATGCAATGGCCGGGTTTCTTTCCCGACG
CGACGATTGATGAGATACTCGTCGACTGGATGGAGTACACGAAGGCGTCT
GAGCAGCGCTAGCGCTGACTAGGTAGCGCATCCACCACCATCTTACGTCT
CTGATTATCACGGTAAAAACGCAGACAGGTCTCCAAATTATATATTAATC
AATTAACCCAATTTAATTCCATTACACTGTCAATACCAAAGTAAACACCC
TATCCCTCCGCACCCTCGGCTCCCTTCTCACCCCAAACACCACCATCCCC
ATCACCCCAAGCGCAACCCCAGCCGCACACCAACCAATCCAATTTCCGAA
AAACCACTCCGCCACCGCAACCTCATCCCCACGCGGTCTCTCCTCGACAA
ACCGCATAAAGAACGCCTTTTCAGTCCCCTCAAACATGCTCCGGGGCACA
ATGCCTACTCTACCCCCAACAGCGGACAACCACACTCCCAGCACCCGGCT
CACCAACACCGCCCCGGCACTCACAAAAGCCGTCACATACGCCGGCACAA
ACCCCCATCGATGCTCATGCACACTCAACGCCACCTTGATCACAAACGGA
TGGTTCGGCTTACTCGCGACGAATTCATTCCCGACCCCGTACGGCCAGTG
CTGAGGTAGCAGCGCCTGGTCTTCTTGCTCCTCGCTCAACAAGACACCCG
CTGATCCTGTTTCTGACGTGTGGTATGTAGGAGTTGGCTTTCATGGGGAA
ATGGTATCATTATATTATAACTAGAGACTACTAAACATGATAATAATAGT
CGGACCTGTCTGTCCATAGCACAACTAACTGTAACACCATGATAACCTCC
GATCATGCATTCATCATGCTGTCTTATTTGAAGGGTATCTCAGCTTTCTT
CAGGCGATTGTTGATTATCACGAACCAGTTTATAGATCTCACACAGTCTC
TATAACCCGAGAGTTTCTCCTGCCCTCCTGCCCATTCCCAGTGTCTGCAT
TCCCGTTGTTTTTATTCTGGTTGAGATATCGATACCGAGCCACCATTTCC
TCACTTAGACATTTTCTTTCATTGATGACTATGCCTGCATCATAACTATA
CTTAATATATTAGCTTGG back to topCoding sequence (CDS) from alignment at ch8:4135841..4139108+ >KJC3_012637-T2 ID=KJC3_012637-T2|Name=KJC3_012637-T2|organism=Aspergillus niger KJC3|type=CDS|length=5748bp|location=Sequence derived from alignment at ch8:4135841..4139108+ (Aspergillus niger KJC3) ATGCTGCTTAATGAATTTCGGACGACACTAATGCCTCACTGTCCATTCGT AGTCGTCCCACCACAGACCTCTGCCGAAAGCCTAAGGAAAGACAAGCCGT TTCTCTTCCTTACTATCTTGACGGCTACTCTGTATGACAACATGCCTCTG CAGCGTATGCTCGAAAAAGAGGTGAAGAAGAAGGTTAGCGACTGCATGAT TTACGATGGACCCATCTCATTCGAGGTGCTGCAAGGGCTGCTAGTCCACA TTGCATGGTGTCAATATCATTCACGGCCACGCCGGTTCTCTCAATATCTA CACCTTGCGATCAGCATTATCACGGACCTGCAACTGGACCGTGCGCATGA GTATCGACTCTGGAGGACTCGAGTGAACTTTAATCCTGAAGAACACAAAG AGTCGGTATCTTGGGGGCACGATGAAAGACGGGCCGTCCTCGGTATCTTT TATTTCGCATCGAGCGTTTCGCAGATCCTCCACAAACAATGCACCTTTCC GTATATGCCTTACTTTGATGACTGCTGCAAGCTTCTGGCCACAGATGCCG AGTATGCCTCCGACCAGCACCTGCTTCATATAGTACAACTTCAACGATTA TCGGAGAGGATTACTTTTATTTCATCACAGAACATTCTAGGGACCCACGG CCCTGGCTCAAGCAGTGAGCGTTCGTTTCGTGAGATGAAACTGGAGCTGG AGCAATATCGGGCTAGCCTACCCTGTCCGTTGAATGAAAACAATATCCTT TACATGCAATACTATACTGCTGAACTGTATCTCTGCCAGATCAGCTTGTT CGATCATAAACCCAGTACACAAAGCCCGCGGCGTGAAGTCCCATTTCAAA TTGAGGCCCTACGTATGGGTCTCATTGCGGCCAAAGCGCTACTCGATCAC TATGTCTGCCTCCCGTTGCGCAGCGAAATGGCGTTTAACAACGCCATATG GATTCAGATCGGCTTCGCGCTGACTCTGGCGTGCAAGCTTGTTGTAGCAG CATCAGAGCCTTCGATACAGCCTCACACAGCGGAGTTGTGCCGTGCGCTT GACATATCCAGCATGCTCAGTCGGTGTATCCTCCGCATCCAGGCGCTAGT TACGTCTAGCTTGGATGCCTCCGGTGACCGAGATGTCTTCTACCACTATG AACAGCGACTGAAACGAGTTCAGTGGTGGTTTGGAAACCGGATGTTATCA AAGAATAAGAATGATTCCATTCAACCTGCGGTGCAACCAACTGACGACAT GAGCTCATCCACAGCTGAGAACAGTCACGTTGAATCATCGCAGCTGCCAC TGGACGGATTAAATGATTATACGATGATACCCCCCGAAGTGTACGATATG CAATGGCCGGGTTTCTTTCCCGACGCGACGATTGATGAGATACTCGTCGA CTGGATGGAGTACACGAAGGCGTCTGAGCAGCGCTAGATGCTGCTTAATG AATTTCGGACGACACTAATGCCTCACTGTCCATTCGTAGTCGTCCCACCA CAGACCTCTGCCGAAAGCCTAAGGAAAGACAAGCCGTTTCTCTTCCTTAC TATCTTGACGGCTACTCTGTATGACAACATGCCTCTGCAGCGTATGCTCG AAAAAGAGGTGAAGAAGAAGGTTAGCGACTGCATGATTTACGATGGACCC ATCTCATTCGAGGTGCTGCAAGGGCTGCTAGTCCACATTGCATGGTGTCA ATATCATTCACGGCCACGCCGGTTCTCTCAATATCTACACCTTGCGATCA GCATTATCACGGACCTGCAACTGGACCGTGCGCATGAGTATCGACTCTGG AGGACTCGAGTGAACTTTAATCCTGAAGAACACAAAGAGTCGGTATCTTG GGGGCACGATGAAAGACGGGCCGTCCTCGGTATCTTTTATTTCGCATCGA GCGTTTCGCAGATCCTCCACAAACAATGCACCTTTCCGTATATGCCTTAC TTTGATGACTGCTGCAAGCTTCTGGCCACAGATGCCGAGTATGCCTCCGA CCAGCACCTGCTTCATATAGTACAACTTCAACGATTATCGGAGAGGATTA CTTTTATTTCATCACAGAACATTCTAGGGACCCACGGCCCTGGCTCAAGC AGTGAGCGTTCGTTTCGTGAGATGAAACTGGAGCTGGAGCAATATCGGGC TAGCCTACCCTGTCCGTTGAATGAAAACAATATCCTTTACATGCAATACT ATACTGCTGAACTGTATCTCTGCCAGATCAGCTTGTTCGATCATAAACCC AGTACACAAAGCCCGCGGCGTGAAGTCCCATTTCAAATTGAGGCCCTACG TATGGGTCTCATTGCGGCCAAAGCGCTACTCGATCACTATGTCTGCCTCC CGTTGCGCAGCGAAATGGCGTTTAACAACGCCATATGGATTCAGATCGGC TTCGCGCTGACTCTGGCGTGCAAGCTTGTTGTAGCAGCATCAGAGCCTTC GATACAGCCTCACACAGCGGAGTTGTGCCGTGCGCTTGACATATCCAGCA TGCTCAGTCGGTGTATCCTCCGCATCCAGGCGCTAGTTACGTCTAGCTTG GATGCCTCCGGTGACCGAGATGTCTTCTACCACTATGAACAGCGACTGAA ACGAGTTCAGTGGTGGTTTGGAAACCGGATGTTATCAAAGAATAAGAATG ATTCCATTCAACCTGCGGTGCAACCAACTGACGACATGAGCTCATCCACA GCTGAGAACAGTCACGTTGAATCATCGCAGCTGCCACTGGACGGATTAAA TGATTATACGATGATACCCCCCGAAGTGTACGATATGCAATGGCCGGGTT TCTTTCCCGACGCGACGATTGATGAGATACTCGTCGACTGGATGGAGTAC ACGAAGGCGTCTGAGCAGCGCTAGATGCTGCTTAATGAATTTCGGACGAC ACTAATGCCTCACTGTCCATTCGTAGTCGTCCCACCACAGACCTCTGCCG AAAGCCTAAGGAAAGACAAGCCGTTTCTCTTCCTTACTATCTTGACGGCT ACTCTGTATGACAACATGCCTCTGCAGCGTATGCTCGAAAAAGAGGTGAA GAAGAAGGTTAGCGACTGCATGATTTACGATGGACCCATCTCATTCGAGG TGCTGCAAGGGCTGCTAGTCCACATTGCATGGTGTCAATATCATTCACGG CCACGCCGGTTCTCTCAATATCTACACCTTGCGATCAGCATTATCACGGA CCTGCAACTGGACCGTGCGCATGAGTATCGACTCTGGAGGACTCGAGTGA ACTTTAATCCTGAAGAACACAAAGAGTCGGTATCTTGGGGGCACGATGAA AGACGGGCCGTCCTCGGTATCTTTTATTTCGCATCGAGCGTTTCGCAGAT CCTCCACAAACAATGCACCTTTCCGTATATGCCTTACTTTGATGACTGCT GCAAGCTTCTGGCCACAGATGCCGAGTATGCCTCCGACCAGCACCTGCTT CATATAGTACAACTTCAACGATTATCGGAGAGGATTACTTTTATTTCATC ACAGAACATTCTAGGGACCCACGGCCCTGGCTCAAGCAGTGAGCGTTCGT TTCGTGAGATGAAACTGGAGCTGGAGCAATATCGGGCTAGCCTACCCTGT CCGTTGAATGAAAACAATATCCTTTACATGCAATACTATACTGCTGAACT GTATCTCTGCCAGATCAGCTTGTTCGATCATAAACCCAGTACACAAAGCC CGCGGCGTGAAGTCCCATTTCAAATTGAGGCCCTACGTATGGGTCTCATT GCGGCCAAAGCGCTACTCGATCACTATGTCTGCCTCCCGTTGCGCAGCGA AATGGCGTTTAACAACGCCATATGGATTCAGATCGGCTTCGCGCTGACTC TGGCGTGCAAGCTTGTTGTAGCAGCATCAGAGCCTTCGATACAGCCTCAC ACAGCGGAGTTGTGCCGTGCGCTTGACATATCCAGCATGCTCAGTCGGTG TATCCTCCGCATCCAGGCGCTAGTTACGTCTAGCTTGGATGCCTCCGGTG ACCGAGATGTCTTCTACCACTATGAACAGCGACTGAAACGAGTTCAGTGG TGGTTTGGAAACCGGATGTTATCAAAGAATAAGAATGATTCCATTCAACC TGCGGTGCAACCAACTGACGACATGAGCTCATCCACAGCTGAGAACAGTC ACGTTGAATCATCGCAGCTGCCACTGGACGGATTAAATGATTATACGATG ATACCCCCCGAAGTGTACGATATGCAATGGCCGGGTTTCTTTCCCGACGC GACGATTGATGAGATACTCGTCGACTGGATGGAGTACACGAAGGCGTCTG AGCAGCGCTAGATGCTGCTTAATGAATTTCGGACGACACTAATGCCTCAC TGTCCATTCGTAGTCGTCCCACCACAGACCTCTGCCGAAAGCCTAAGGAA AGACAAGCCGTTTCTCTTCCTTACTATCTTGACGGCTACTCTGTATGACA ACATGCCTCTGCAGCGTATGCTCGAAAAAGAGGTGAAGAAGAAGGTTAGC GACTGCATGATTTACGATGGACCCATCTCATTCGAGGTGCTGCAAGGGCT GCTAGTCCACATTGCATGGTGTCAATATCATTCACGGCCACGCCGGTTCT CTCAATATCTACACCTTGCGATCAGCATTATCACGGACCTGCAACTGGAC CGTGCGCATGAGTATCGACTCTGGAGGACTCGAGTGAACTTTAATCCTGA AGAACACAAAGAGTCGGTATCTTGGGGGCACGATGAAAGACGGGCCGTCC TCGGTATCTTTTATTTCGCATCGAGCGTTTCGCAGATCCTCCACAAACAA TGCACCTTTCCGTATATGCCTTACTTTGATGACTGCTGCAAGCTTCTGGC CACAGATGCCGAGTATGCCTCCGACCAGCACCTGCTTCATATAGTACAAC TTCAACGATTATCGGAGAGGATTACTTTTATTTCATCACAGAACATTCTA GGGACCCACGGCCCTGGCTCAAGCAGTGAGCGTTCGTTTCGTGAGATGAA ACTGGAGCTGGAGCAATATCGGGCTAGCCTACCCTGTCCGTTGAATGAAA ACAATATCCTTTACATGCAATACTATACTGCTGAACTGTATCTCTGCCAG ATCAGCTTGTTCGATCATAAACCCAGTACACAAAGCCCGCGGCGTGAAGT CCCATTTCAAATTGAGGCCCTACGTATGGGTCTCATTGCGGCCAAAGCGC TACTCGATCACTATGTCTGCCTCCCGTTGCGCAGCGAAATGGCGTTTAAC AACGCCATATGGATTCAGATCGGCTTCGCGCTGACTCTGGCGTGCAAGCT TGTTGTAGCAGCATCAGAGCCTTCGATACAGCCTCACACAGCGGAGTTGT GCCGTGCGCTTGACATATCCAGCATGCTCAGTCGGTGTATCCTCCGCATC CAGGCGCTAGTTACGTCTAGCTTGGATGCCTCCGGTGACCGAGATGTCTT CTACCACTATGAACAGCGACTGAAACGAGTTCAGTGGTGGTTTGGAAACC GGATGTTATCAAAGAATAAGAATGATTCCATTCAACCTGCGGTGCAACCA ACTGACGACATGAGCTCATCCACAGCTGAGAACAGTCACGTTGAATCATC GCAGCTGCCACTGGACGGATTAAATGATTATACGATGATACCCCCCGAAG TGTACGATATGCAATGGCCGGGTTTCTTTCCCGACGCGACGATTGATGAG ATACTCGTCGACTGGATGGAGTACACGAAGGCGTCTGAGCAGCGCTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
Term | Definition |
GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
Term | Definition |
GO:0008270 | zinc ion binding |
GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Vocabulary: Biological Process
Term | Definition |
GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_012637-T2.utr3p1 | KJC3_012637-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
Property Name | Value |
DBxref | InterPro:IPR036864 |
DBxref | InterPro:IPR001138 |
DBxref | PFAM:PF00172 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch8 | supercontig | ch8:4135841..4139108 + |
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