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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:4135841..4139108+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012637-T2 ID=KJC3_012637-T2|Name=KJC3_012637-T2|organism=Aspergillus niger KJC3|type=mRNA|length=3268bp|location=Sequence derived from alignment at ch8:4135841..4139108+ (Aspergillus niger KJC3)
CTGGGGTCTACAGGGCCCCATTTCATCCCAGCTACCTTCTTGCCGTCTCC
TCGGCCTGCGCACGGAACTCCACTCCCTGTAGGTTTCCAAGATTACCGCT
TAACCGTTGGATCTATCAAATACAGCGGTGACGCGAAAATCTCCAGCTGT
GATGGCTCACTTGGTCCAGAGTGAGCTTTCCCGTCCCAGGGGCCGGTATT
CTAACGGCTCAGTAAGGACATGTCAGAACTGTGCCAGAGCAAAGATACGG
TGCAATCGCCACGGGGCTACGGGGAGTTGCGAACGGTGAGCTTGTCTGAG
CGACCTGATTGTTTGGTGGGCTTACTAGTTCTAGATGCGAACGGCTGGGG
AAAGAGTGTCATTTCCCAGAAACCCGAAGCACAAATGGAGGGACCAAGAG
AGAGAGCAAGGACAGGTTAGTTGCGAGCCACGGACAAGTAGGTCGCCTTT
TAACCAAGCATAGGAGGATCGATCTACTCGAAGCCAAAGTCGATCAGCTG
CTAGCGACGTCGGTATCTCCAAGCCTGGTGCGTCGAACACCCTCAATTGC
GCTATACAAAGAGACTAACCGTGTCTTAAGAGGGGTAACAGCACGGCCAA
TGGGAGCCCTGCAAGCACTGTTTCGCAGTCCAAGGATGCCATTGACAAAG
GCTTGCTTACCGTGGAGGCCGCCAACATGCTGCTTAATGAATTTCGGACG
ACACTAATGCCTCACTGTCCATTCGTAGTCGTCCCACCACAGACCTCTGC
CGAAAGCCTAAGGAAAGACAAGCCGTTTCTCTTCCTTACTATCTTGACGG
CTACTCTGTATGACAACATGCCTCTGCAGCGTATGCTCGAAAAAGAGGTG
AAGAAGAAGGTTAGCGACTGCATGATTTACGATGGACCCATCTCATTCGA
GGTGCTGCAAGGGCTGCTAGTCCACATTGCATGGTACGCCTGATATTCCA
TGTCCGAACACTGAGCTGACAAGTTTAGGTGTCAATATCATTCACGGCCA
CGCCGGTTCTCTCAATATCTACACCTTGCGATCAGCATTATCACGGACCT
GCAACTGGACCGTGCGCATGAGTATCGACTCTGGAGGACTCGAGTGAACT
TTAATCCTGAAGAACACAAAGAGTCGGTATCTTGGGGGCACGATGAAAGA
CGGGCCGTCCTCGGTATCTTTTATTTCGCATCGAGGTAAGTCTAGGCATC
TACTCTACACAGTTACTACCTGCTGGGATTAACGGCTTGTAGCGTTTCGC
AGATCCTCCACAAACAATGCACCTTTCCGTATATGCCTTACTTTGATGAC
TGCTGCAAGCTTCTGGCCACAGATGCCGAGTATGCCTCCGACCAGCACCT
GCTTCATATAGTACAACTTCAACGATTATCGGAGAGGATTACTTTTATTT
CATCACAGAACATTCTAGGGACCCACGGCCCTGGCTCAAGCAGTGAGCGT
TCGTTTCGTGAGATGAAACTGGAGCTGGAGCAATATCGGGCTAGCCTACC
CTGTCCGTTGAATGAAAACAGTAAGCCGACCGATTATGAAAAGCCCATCG
ATGCTGATGACCCTCAGATATCCTTTACATGCAATACTATACTGCTGAAC
TGTATCTCTGCCAGATCAGCTTGTTCGATCATAAACCCAGTACACAAAGC
CCGCGGCGTGAAGTCCCATTTCAAATTGAGGCCCTACGTATGGGTCTCAT
TGCGGCCAAAGCGCTACTCGATCACTATGTCTGCCTCCCGTTGCGCAGCG
AAATGGCGTTTAACAACGCCATATGGATTCAGATCGGCTTCGCGCTGACT
CTGGCGTGCAAGCTTGTTGTAGCAGCATCAGAGCCTTCGATACAGCCTCA
CACAGCGGAGTTGTGCCGTGCGCTTGACATATCCAGCATGCTCAGTCGGT
GTATCCTCCGCATCCAGGCGCTAGTTACGTCTAGCTTGGATGCCTCCGGT
GACCGAGATGTCTTCTACCACTATGAACAGCGACTGAAACGAGTTCAGTG
GTGGTTTGGAAACCGGATGTTATCAAAGAATAAGAATGATTCCATTCAAC
CTGCGGTGCAACCAACTGACGACATGAGCTCATCCACAGCTGAGAACAGT
CACGTTGAATCATCGCAGCTGCCACTGGACGGATTAAATGATTATACGAT
GATACCCCCCGAAGTGTACGATATGCAATGGCCGGGTTTCTTTCCCGACG
CGACGATTGATGAGATACTCGTCGACTGGATGGAGTACACGAAGGCGTCT
GAGCAGCGCTAGCGCTGACTAGGTAGCGCATCCACCACCATCTTACGTCT
CTGATTATCACGGTAAAAACGCAGACAGGTCTCCAAATTATATATTAATC
AATTAACCCAATTTAATTCCATTACACTGTCAATACCAAAGTAAACACCC
TATCCCTCCGCACCCTCGGCTCCCTTCTCACCCCAAACACCACCATCCCC
ATCACCCCAAGCGCAACCCCAGCCGCACACCAACCAATCCAATTTCCGAA
AAACCACTCCGCCACCGCAACCTCATCCCCACGCGGTCTCTCCTCGACAA
ACCGCATAAAGAACGCCTTTTCAGTCCCCTCAAACATGCTCCGGGGCACA
ATGCCTACTCTACCCCCAACAGCGGACAACCACACTCCCAGCACCCGGCT
CACCAACACCGCCCCGGCACTCACAAAAGCCGTCACATACGCCGGCACAA
ACCCCCATCGATGCTCATGCACACTCAACGCCACCTTGATCACAAACGGA
TGGTTCGGCTTACTCGCGACGAATTCATTCCCGACCCCGTACGGCCAGTG
CTGAGGTAGCAGCGCCTGGTCTTCTTGCTCCTCGCTCAACAAGACACCCG
CTGATCCTGTTTCTGACGTGTGGTATGTAGGAGTTGGCTTTCATGGGGAA
ATGGTATCATTATATTATAACTAGAGACTACTAAACATGATAATAATAGT
CGGACCTGTCTGTCCATAGCACAACTAACTGTAACACCATGATAACCTCC
GATCATGCATTCATCATGCTGTCTTATTTGAAGGGTATCTCAGCTTTCTT
CAGGCGATTGTTGATTATCACGAACCAGTTTATAGATCTCACACAGTCTC
TATAACCCGAGAGTTTCTCCTGCCCTCCTGCCCATTCCCAGTGTCTGCAT
TCCCGTTGTTTTTATTCTGGTTGAGATATCGATACCGAGCCACCATTTCC
TCACTTAGACATTTTCTTTCATTGATGACTATGCCTGCATCATAACTATA
CTTAATATATTAGCTTGG back to topCoding sequence (CDS) from alignment at ch8:4135841..4139108+ >KJC3_012637-T2 ID=KJC3_012637-T2|Name=KJC3_012637-T2|organism=Aspergillus niger KJC3|type=CDS|length=5748bp|location=Sequence derived from alignment at ch8:4135841..4139108+ (Aspergillus niger KJC3)
ATGCTGCTTAATGAATTTCGGACGACACTAATGCCTCACTGTCCATTCGT
AGTCGTCCCACCACAGACCTCTGCCGAAAGCCTAAGGAAAGACAAGCCGT
TTCTCTTCCTTACTATCTTGACGGCTACTCTGTATGACAACATGCCTCTG
CAGCGTATGCTCGAAAAAGAGGTGAAGAAGAAGGTTAGCGACTGCATGAT
TTACGATGGACCCATCTCATTCGAGGTGCTGCAAGGGCTGCTAGTCCACA
TTGCATGGTGTCAATATCATTCACGGCCACGCCGGTTCTCTCAATATCTA
CACCTTGCGATCAGCATTATCACGGACCTGCAACTGGACCGTGCGCATGA
GTATCGACTCTGGAGGACTCGAGTGAACTTTAATCCTGAAGAACACAAAG
AGTCGGTATCTTGGGGGCACGATGAAAGACGGGCCGTCCTCGGTATCTTT
TATTTCGCATCGAGCGTTTCGCAGATCCTCCACAAACAATGCACCTTTCC
GTATATGCCTTACTTTGATGACTGCTGCAAGCTTCTGGCCACAGATGCCG
AGTATGCCTCCGACCAGCACCTGCTTCATATAGTACAACTTCAACGATTA
TCGGAGAGGATTACTTTTATTTCATCACAGAACATTCTAGGGACCCACGG
CCCTGGCTCAAGCAGTGAGCGTTCGTTTCGTGAGATGAAACTGGAGCTGG
AGCAATATCGGGCTAGCCTACCCTGTCCGTTGAATGAAAACAATATCCTT
TACATGCAATACTATACTGCTGAACTGTATCTCTGCCAGATCAGCTTGTT
CGATCATAAACCCAGTACACAAAGCCCGCGGCGTGAAGTCCCATTTCAAA
TTGAGGCCCTACGTATGGGTCTCATTGCGGCCAAAGCGCTACTCGATCAC
TATGTCTGCCTCCCGTTGCGCAGCGAAATGGCGTTTAACAACGCCATATG
GATTCAGATCGGCTTCGCGCTGACTCTGGCGTGCAAGCTTGTTGTAGCAG
CATCAGAGCCTTCGATACAGCCTCACACAGCGGAGTTGTGCCGTGCGCTT
GACATATCCAGCATGCTCAGTCGGTGTATCCTCCGCATCCAGGCGCTAGT
TACGTCTAGCTTGGATGCCTCCGGTGACCGAGATGTCTTCTACCACTATG
AACAGCGACTGAAACGAGTTCAGTGGTGGTTTGGAAACCGGATGTTATCA
AAGAATAAGAATGATTCCATTCAACCTGCGGTGCAACCAACTGACGACAT
GAGCTCATCCACAGCTGAGAACAGTCACGTTGAATCATCGCAGCTGCCAC
TGGACGGATTAAATGATTATACGATGATACCCCCCGAAGTGTACGATATG
CAATGGCCGGGTTTCTTTCCCGACGCGACGATTGATGAGATACTCGTCGA
CTGGATGGAGTACACGAAGGCGTCTGAGCAGCGCTAGATGCTGCTTAATG
AATTTCGGACGACACTAATGCCTCACTGTCCATTCGTAGTCGTCCCACCA
CAGACCTCTGCCGAAAGCCTAAGGAAAGACAAGCCGTTTCTCTTCCTTAC
TATCTTGACGGCTACTCTGTATGACAACATGCCTCTGCAGCGTATGCTCG
AAAAAGAGGTGAAGAAGAAGGTTAGCGACTGCATGATTTACGATGGACCC
ATCTCATTCGAGGTGCTGCAAGGGCTGCTAGTCCACATTGCATGGTGTCA
ATATCATTCACGGCCACGCCGGTTCTCTCAATATCTACACCTTGCGATCA
GCATTATCACGGACCTGCAACTGGACCGTGCGCATGAGTATCGACTCTGG
AGGACTCGAGTGAACTTTAATCCTGAAGAACACAAAGAGTCGGTATCTTG
GGGGCACGATGAAAGACGGGCCGTCCTCGGTATCTTTTATTTCGCATCGA
GCGTTTCGCAGATCCTCCACAAACAATGCACCTTTCCGTATATGCCTTAC
TTTGATGACTGCTGCAAGCTTCTGGCCACAGATGCCGAGTATGCCTCCGA
CCAGCACCTGCTTCATATAGTACAACTTCAACGATTATCGGAGAGGATTA
CTTTTATTTCATCACAGAACATTCTAGGGACCCACGGCCCTGGCTCAAGC
AGTGAGCGTTCGTTTCGTGAGATGAAACTGGAGCTGGAGCAATATCGGGC
TAGCCTACCCTGTCCGTTGAATGAAAACAATATCCTTTACATGCAATACT
ATACTGCTGAACTGTATCTCTGCCAGATCAGCTTGTTCGATCATAAACCC
AGTACACAAAGCCCGCGGCGTGAAGTCCCATTTCAAATTGAGGCCCTACG
TATGGGTCTCATTGCGGCCAAAGCGCTACTCGATCACTATGTCTGCCTCC
CGTTGCGCAGCGAAATGGCGTTTAACAACGCCATATGGATTCAGATCGGC
TTCGCGCTGACTCTGGCGTGCAAGCTTGTTGTAGCAGCATCAGAGCCTTC
GATACAGCCTCACACAGCGGAGTTGTGCCGTGCGCTTGACATATCCAGCA
TGCTCAGTCGGTGTATCCTCCGCATCCAGGCGCTAGTTACGTCTAGCTTG
GATGCCTCCGGTGACCGAGATGTCTTCTACCACTATGAACAGCGACTGAA
ACGAGTTCAGTGGTGGTTTGGAAACCGGATGTTATCAAAGAATAAGAATG
ATTCCATTCAACCTGCGGTGCAACCAACTGACGACATGAGCTCATCCACA
GCTGAGAACAGTCACGTTGAATCATCGCAGCTGCCACTGGACGGATTAAA
TGATTATACGATGATACCCCCCGAAGTGTACGATATGCAATGGCCGGGTT
TCTTTCCCGACGCGACGATTGATGAGATACTCGTCGACTGGATGGAGTAC
ACGAAGGCGTCTGAGCAGCGCTAGATGCTGCTTAATGAATTTCGGACGAC
ACTAATGCCTCACTGTCCATTCGTAGTCGTCCCACCACAGACCTCTGCCG
AAAGCCTAAGGAAAGACAAGCCGTTTCTCTTCCTTACTATCTTGACGGCT
ACTCTGTATGACAACATGCCTCTGCAGCGTATGCTCGAAAAAGAGGTGAA
GAAGAAGGTTAGCGACTGCATGATTTACGATGGACCCATCTCATTCGAGG
TGCTGCAAGGGCTGCTAGTCCACATTGCATGGTGTCAATATCATTCACGG
CCACGCCGGTTCTCTCAATATCTACACCTTGCGATCAGCATTATCACGGA
CCTGCAACTGGACCGTGCGCATGAGTATCGACTCTGGAGGACTCGAGTGA
ACTTTAATCCTGAAGAACACAAAGAGTCGGTATCTTGGGGGCACGATGAA
AGACGGGCCGTCCTCGGTATCTTTTATTTCGCATCGAGCGTTTCGCAGAT
CCTCCACAAACAATGCACCTTTCCGTATATGCCTTACTTTGATGACTGCT
GCAAGCTTCTGGCCACAGATGCCGAGTATGCCTCCGACCAGCACCTGCTT
CATATAGTACAACTTCAACGATTATCGGAGAGGATTACTTTTATTTCATC
ACAGAACATTCTAGGGACCCACGGCCCTGGCTCAAGCAGTGAGCGTTCGT
TTCGTGAGATGAAACTGGAGCTGGAGCAATATCGGGCTAGCCTACCCTGT
CCGTTGAATGAAAACAATATCCTTTACATGCAATACTATACTGCTGAACT
GTATCTCTGCCAGATCAGCTTGTTCGATCATAAACCCAGTACACAAAGCC
CGCGGCGTGAAGTCCCATTTCAAATTGAGGCCCTACGTATGGGTCTCATT
GCGGCCAAAGCGCTACTCGATCACTATGTCTGCCTCCCGTTGCGCAGCGA
AATGGCGTTTAACAACGCCATATGGATTCAGATCGGCTTCGCGCTGACTC
TGGCGTGCAAGCTTGTTGTAGCAGCATCAGAGCCTTCGATACAGCCTCAC
ACAGCGGAGTTGTGCCGTGCGCTTGACATATCCAGCATGCTCAGTCGGTG
TATCCTCCGCATCCAGGCGCTAGTTACGTCTAGCTTGGATGCCTCCGGTG
ACCGAGATGTCTTCTACCACTATGAACAGCGACTGAAACGAGTTCAGTGG
TGGTTTGGAAACCGGATGTTATCAAAGAATAAGAATGATTCCATTCAACC
TGCGGTGCAACCAACTGACGACATGAGCTCATCCACAGCTGAGAACAGTC
ACGTTGAATCATCGCAGCTGCCACTGGACGGATTAAATGATTATACGATG
ATACCCCCCGAAGTGTACGATATGCAATGGCCGGGTTTCTTTCCCGACGC
GACGATTGATGAGATACTCGTCGACTGGATGGAGTACACGAAGGCGTCTG
AGCAGCGCTAGATGCTGCTTAATGAATTTCGGACGACACTAATGCCTCAC
TGTCCATTCGTAGTCGTCCCACCACAGACCTCTGCCGAAAGCCTAAGGAA
AGACAAGCCGTTTCTCTTCCTTACTATCTTGACGGCTACTCTGTATGACA
ACATGCCTCTGCAGCGTATGCTCGAAAAAGAGGTGAAGAAGAAGGTTAGC
GACTGCATGATTTACGATGGACCCATCTCATTCGAGGTGCTGCAAGGGCT
GCTAGTCCACATTGCATGGTGTCAATATCATTCACGGCCACGCCGGTTCT
CTCAATATCTACACCTTGCGATCAGCATTATCACGGACCTGCAACTGGAC
CGTGCGCATGAGTATCGACTCTGGAGGACTCGAGTGAACTTTAATCCTGA
AGAACACAAAGAGTCGGTATCTTGGGGGCACGATGAAAGACGGGCCGTCC
TCGGTATCTTTTATTTCGCATCGAGCGTTTCGCAGATCCTCCACAAACAA
TGCACCTTTCCGTATATGCCTTACTTTGATGACTGCTGCAAGCTTCTGGC
CACAGATGCCGAGTATGCCTCCGACCAGCACCTGCTTCATATAGTACAAC
TTCAACGATTATCGGAGAGGATTACTTTTATTTCATCACAGAACATTCTA
GGGACCCACGGCCCTGGCTCAAGCAGTGAGCGTTCGTTTCGTGAGATGAA
ACTGGAGCTGGAGCAATATCGGGCTAGCCTACCCTGTCCGTTGAATGAAA
ACAATATCCTTTACATGCAATACTATACTGCTGAACTGTATCTCTGCCAG
ATCAGCTTGTTCGATCATAAACCCAGTACACAAAGCCCGCGGCGTGAAGT
CCCATTTCAAATTGAGGCCCTACGTATGGGTCTCATTGCGGCCAAAGCGC
TACTCGATCACTATGTCTGCCTCCCGTTGCGCAGCGAAATGGCGTTTAAC
AACGCCATATGGATTCAGATCGGCTTCGCGCTGACTCTGGCGTGCAAGCT
TGTTGTAGCAGCATCAGAGCCTTCGATACAGCCTCACACAGCGGAGTTGT
GCCGTGCGCTTGACATATCCAGCATGCTCAGTCGGTGTATCCTCCGCATC
CAGGCGCTAGTTACGTCTAGCTTGGATGCCTCCGGTGACCGAGATGTCTT
CTACCACTATGAACAGCGACTGAAACGAGTTCAGTGGTGGTTTGGAAACC
GGATGTTATCAAAGAATAAGAATGATTCCATTCAACCTGCGGTGCAACCA
ACTGACGACATGAGCTCATCCACAGCTGAGAACAGTCACGTTGAATCATC
GCAGCTGCCACTGGACGGATTAAATGATTATACGATGATACCCCCCGAAG
TGTACGATATGCAATGGCCGGGTTTCTTTCCCGACGCGACGATTGATGAG
ATACTCGTCGACTGGATGGAGTACACGAAGGCGTCTGAGCAGCGCTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012637-T2.utr3p1 | KJC3_012637-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:4135841..4139108 + |
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