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KJC3_012643-T1, KJC3_012643-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012643-T1
Unique NameKJC3_012643-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:4156562..4158021-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012643-T1 ID=KJC3_012643-T1|Name=KJC3_012643-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1460bp|location=Sequence derived from alignment at ch8:4156562..4158021- (Aspergillus niger KJC3)
CACCGTATCCTTTTCCCCTGCTTTCTATCTTTCTAGACTTAGTGAGCTTG
ACTACTTGAGTGACCCTGGTAGACAACATTTTTCCACTCCTCCACCTTTT
CGCTCAACGTTCCATCAAGGCTTGTTCTGAGTTCACAGCATCCGGGGATT
CATCGGGTGGGTCAATCCGCTTCCCCTCCAGCCAACTGTCCCGCTGCATT
CGGAGCCAGCGTCATTCCAGACAACCCTCTTCTTCTTCCTCTTCCTTTCT
CTTCCTACCGATTACGACGGTCCGTTTAACTCTACCTGACATTCCTCCCA
TCCCGGAAACTCTCGTCATCGTCTCTTCCTCTTAAACCGACCGTTGTTTC
CGCTACAGCCCCCCGATTTCTTTGCTCTCCTTCAGAATGGACTACAGTAT
GGAAGACACACAGAATTCGGCCCCTGACGCCCATGAGGCGTCCAAGCTCA
ACTCGTCAACCCAGAGAACCGACATTCAGAGCGTCACTAAGCGGTTCGTA
CAATGATGCTGAATGCAGCCTCCAAATCCCTCGGATTTCCTCTGGAATCT
TGCATACTGATTATCATTCTATCTCGCCAGCCTCCAAGCCGAGCTGATGC
AGCTGATGCTTTCCCCCTCTCCGGGAATCTCGGCCTTCCCTGACGCCGAT
GGCAACCTCCTCTCCTGGACTGCCACCATTAGCGGACCGGCCGAAACTCC
TTACGAAGGACTCACTTTCCGTCTTTCCTTTGCCTTTCCCAACAACTACC
CTTACGCTCCCCCTACCGTTCTGTTCAAAACCCCCATCTACCACCCCAAT
GTCGACTTCTCCGGCCGCATCTGTCTGGACATCCTGAAGGACAAGTGGAG
TGCCGTCTACAACGTGCAGAGTGTTCTCCTCAGTTTGCAGAGCTTGCTGG
GTGAACCTAACAAGTGAGACGAATTCACATCGCAACGTTTGCGACCATTC
ATGCTAACCAATAATTAGCGCAAGCCCTCTCAACGCCCAAGCCGCTGAAC
TCTGGGATACCGATCAAGAAGAATACAAGAAACACGTTATGGCCCGGCAC
CGCGACATCGAAGACATCGAGTAAATGGTTCGTCTATAATCGTCGTCGTC
CGTTCGGTTGTTCCCGCAGACATGGGACGGACCGACTTGCATTGCATGAG
ATCGGGGTCTGTGCGTTTCATTGGGGGCAACGGTTGCATGGTGCATCCTG
GTCTTGGTCGTGACATCGACGGAGCCAGGAGTCATGATTTCAGCACCGAT
GATTTTCAGGAGTTTATGCGTTCGGGGAATTTTCGTTTGGGGCCACAATT
GGAATGGAAATACAGGAGCCCGCGTGTCCCGGGATAAATACCCTGCTTTG
CTTTTTACATTCGTTCTTATTTTTACCTGCACATGATGTTGGGTTCGTTG
GTAGCTATTACGTAGGCAGTCACGGAACAAAGAGGTAGCTTCCATTGTAT
CTTTTGACGA
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Coding sequence (CDS) from alignment at ch8:4156562..4158021-

>KJC3_012643-T1 ID=KJC3_012643-T1|Name=KJC3_012643-T1|organism=Aspergillus niger KJC3|type=CDS|length=1638bp|location=Sequence derived from alignment at ch8:4156562..4158021- (Aspergillus niger KJC3)
CGCAAGCCCTCTCAACGCCCAAGCCGCTGAACTCTGGGATACCGATCAAG
AAGAATACAAGAAACACGTTATGGCCCGGCACCGCGACATCGAAGACATC
GAGTAACCTCCAAGCCGAGCTGATGCAGCTGATGCTTTCCCCCTCTCCGG
GAATCTCGGCCTTCCCTGACGCCGATGGCAACCTCCTCTCCTGGACTGCC
ACCATTAGCGGACCGGCCGAAACTCCTTACGAAGGACTCACTTTCCGTCT
TTCCTTTGCCTTTCCCAACAACTACCCTTACGCTCCCCCTACCGTTCTGT
TCAAAACCCCCATCTACCACCCCAATGTCGACTTCTCCGGCCGCATCTGT
CTGGACATCCTGAAGGACAAGTGGAGTGCCGTCTACAACGTGCAGAGTGT
TCTCCTCAGTTTGCAGAGCTTGCTGGGTGAACCTAACAAATGGACTACAG
TATGGAAGACACACAGAATTCGGCCCCTGACGCCCATGAGGCGTCCAAGC
TCAACTCGTCAACCCAGAGAACCGACATTCAGAGCGTCACTAAGCGCGCA
AGCCCTCTCAACGCCCAAGCCGCTGAACTCTGGGATACCGATCAAGAAGA
ATACAAGAAACACGTTATGGCCCGGCACCGCGACATCGAAGACATCGAGT
AACCTCCAAGCCGAGCTGATGCAGCTGATGCTTTCCCCCTCTCCGGGAAT
CTCGGCCTTCCCTGACGCCGATGGCAACCTCCTCTCCTGGACTGCCACCA
TTAGCGGACCGGCCGAAACTCCTTACGAAGGACTCACTTTCCGTCTTTCC
TTTGCCTTTCCCAACAACTACCCTTACGCTCCCCCTACCGTTCTGTTCAA
AACCCCCATCTACCACCCCAATGTCGACTTCTCCGGCCGCATCTGTCTGG
ACATCCTGAAGGACAAGTGGAGTGCCGTCTACAACGTGCAGAGTGTTCTC
CTCAGTTTGCAGAGCTTGCTGGGTGAACCTAACAAATGGACTACAGTATG
GAAGACACACAGAATTCGGCCCCTGACGCCCATGAGGCGTCCAAGCTCAA
CTCGTCAACCCAGAGAACCGACATTCAGAGCGTCACTAAGCGCGCAAGCC
CTCTCAACGCCCAAGCCGCTGAACTCTGGGATACCGATCAAGAAGAATAC
AAGAAACACGTTATGGCCCGGCACCGCGACATCGAAGACATCGAGTAACC
TCCAAGCCGAGCTGATGCAGCTGATGCTTTCCCCCTCTCCGGGAATCTCG
GCCTTCCCTGACGCCGATGGCAACCTCCTCTCCTGGACTGCCACCATTAG
CGGACCGGCCGAAACTCCTTACGAAGGACTCACTTTCCGTCTTTCCTTTG
CCTTTCCCAACAACTACCCTTACGCTCCCCCTACCGTTCTGTTCAAAACC
CCCATCTACCACCCCAATGTCGACTTCTCCGGCCGCATCTGTCTGGACAT
CCTGAAGGACAAGTGGAGTGCCGTCTACAACGTGCAGAGTGTTCTCCTCA
GTTTGCAGAGCTTGCTGGGTGAACCTAACAAATGGACTACAGTATGGAAG
ACACACAGAATTCGGCCCCTGACGCCCATGAGGCGTCCAAGCTCAACTCG
TCAACCCAGAGAACCGACATTCAGAGCGTCACTAAGCG
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
UBC11KJC3_012643Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012643-T1KJC3_012643-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012643-T1.cdsKJC3_012643-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012643-T1.utr3p1KJC3_012643-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012643-T1.exon3KJC3_012643-T1.exon3Aspergillus niger KJC3exon
KJC3_012643-T1.exon2KJC3_012643-T1.exon2Aspergillus niger KJC3exon
KJC3_012643-T1.exon1KJC3_012643-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012643-T1.utr5p1KJC3_012643-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR023313
DBxrefInterPro:IPR016135
DBxrefInterPro:IPR000608
DBxrefPFAM:PF00179
ProductUbiquitin-conjugating enzyme E2 11
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:4156562..4158021 -
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