You are here

Home

KJC3_012662-T1, KJC3_012662-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_012662-T1
Unique NameKJC3_012662-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch8:4221204..4222999-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_012662-T1 ID=KJC3_012662-T1|Name=KJC3_012662-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1796bp|location=Sequence derived from alignment at ch8:4221204..4222999- (Aspergillus niger KJC3)
TAGCCGGTCCATCATGATAAGGAGACTTCGGTTGTAGTAGACGCATACTA
GTATGTACTCCTCCCTGCTCGAAATCCCCCAGCTGCATCCAAGGCTGGAA
GCACATCACTGTCGGATCCTTCTCTTTTCTATATTTTCCACGTGACTGAG
GGCAGCTGACCCACTTACCTAATTGCGCGTGAGCCTCTGATAATCCATTC
CTGTTCTCACTCTGATCGTCCTGCTGATTGTTCAATTCTATATAGAAGGC
TGCGATATAGGCCGGCGATAGTACGTATCTCAAGTACCAGCTTTATTACC
TCTGTGACCTGGAAAGATAATTGTATGTTGGTTGTGTTCTGCGCAACTTG
TACAGTCCATGCTGGCTGTTGACCTTCATTCAAGACAACCGACGCAGTGC
CGACAGCTAATGCAAGTTGGTGTCTGGCAGTTGCAGATCGATTGCACTGA
AGTGTGATTTAGGCCGGAGACATGGCTACTCAGCTAGTTTCTCTGGCAGA
GGTGGAGAGACTCAGCGCCTCGGTCGTACGGATATTGGGGGGCAATCCCG
GCAAGGTGAGCTAATTTTGAGATATCAGTCCGGCCTTGTTGGACAAATAA
ACTGACATGAATTTCTATTAGTTCACACTACAAGGTATGTATCTTACAAA
TCTTATTAGCGGCGCAGGGGAGTGTTGCTCTAACCGGATACTTCATAGGC
ACGAATACATATCTAATCGGCCGAGGTCGCCAACGCATCCTCATTGACAC
TGGTCAGGGTGAACCCTCCTGGGCAGCCCGGCTCAAGACCCTCTTGGCAG
AAGAGAACGCAACTGTGCATCAGGCCCTCCTTACGCACTGGCATCCAGAC
CATGTTAAAGGCGTCCCTGACCTCTTGGCATTATGCCCGGACGTTGTCAT
CTACAAGAATGATCCCGATCTCGGCCAAGAGAGCATTGAAGACGGCCAGA
TATTCAGTGTTGAAGGTGCAACGCTACGAGCATACCATACCCCGGGTCAT
GCCGTTGACCATATGATGTTTGTCCATGAGGAGGAAGATTCCGTCTTTAC
GGGTGATAGTGAGTATTGTGGCAATCTTCATGCCATGCCTCAGGGCTAAA
TGTTCTTCTCAGATGTCTTGGGCCATGGCACGAGTGTCTTCGAGGACCTC
TCGACCTATATATCTAGCCTAAAGCGAATGCAGTACCGGGTTTCGGGTCG
CGCCTATCCGGGCCACGGAGCTGTCATCGAGAATGCGACAGCAAAGATCA
CAGAGTACATCAAGCACCGACAACAACGAGAGGATGAAGTGGTTCGCGTT
CTCCGGTATAACCACCTCGATGTCGCAGATGGGGAAGCATCCCCGGAGCG
TAAACGGTCCTGGACCCCGCTGGAACTAGTCAAAGTGATCTACAAAGATG
TGCCGGAAAGCCTTCATCTGCCTGCTTCCAATGGAGTGTTGCTTGTTCTG
AAGAAATTGGAGGAAGAAGGCCGGGTAAGCCGAGATGTCGATGGGCGATG
GGTTCTGGAAACTGGGCGATCTGCGCTTTGAAGAATCACGAGAAGGGTTG
GCTCGTTAGATTATCATAGTAATTATATCAGTAGATCATTTTTCCTGGTT
TATAAGGCTTAGTACTTTACGGGGGATTCGATACTAGCCGGAAGATTGGA
GACGGGCACACCGGGGCGAAGATGCTTGTGACCGCCATGGCGTGCGTGCA
TATTCACCAAATCATAGACCATATGACATTCCTGACGGTCTTTCACAACC
ATTATCCCTTACATGCTTCTACATCATGCTTCTACATACTACATAC
back to top

Coding sequence (CDS) from alignment at ch8:4221204..4222999-

>KJC3_012662-T1 ID=KJC3_012662-T1|Name=KJC3_012662-T1|organism=Aspergillus niger KJC3|type=CDS|length=3504bp|location=Sequence derived from alignment at ch8:4221204..4222999- (Aspergillus niger KJC3)
ATGTCTTGGGCCATGGCACGAGTGTCTTCGAGGACCTCTCGACCTATATA
TCTAGCCTAAAGCGAATGCAGTACCGGGTTTCGGGTCGCGCCTATCCGGG
CCACGGAGCTGTCATCGAGAATGCGACAGCAAAGATCACAGAGTACATCA
AGCACCGACAACAACGAGAGGATGAAGTGGTTCGCGTTCTCCGGTATAAC
CACCTCGATGTCGCAGATGGGGAAGCATCCCCGGAGCGTAAACGGTCCTG
GACCCCGCTGGAACTAGTCAAAGTGATCTACAAAGATGTGCCGGAAAGCC
TTCATCTGCCTGCTTCCAATGGAGTGTTGCTTGTTCTGAAGAAATTGGAG
GAAGAAGGCCGGGTAAGCCGAGATGTCGATGGGCGATGGGTTCTGGAAAC
TGGGCGATCTGCGCTTTGAGCACGAATACATATCTAATCGGCCGAGGTCG
CCAACGCATCCTCATTGACACTGGTCAGGGTGAACCCTCCTGGGCAGCCC
GGCTCAAGACCCTCTTGGCAGAAGAGAACGCAACTGTGCATCAGGCCCTC
CTTACGCACTGGCATCCAGACCATGTTAAAGGCGTCCCTGACCTCTTGGC
ATTATGCCCGGACGTTGTCATCTACAAGAATGATCCCGATCTCGGCCAAG
AGAGCATTGAAGACGGCCAGATATTCAGTGTTGAAGGTGCAACGCTACGA
GCATACCATACCCCGGGTCATGCCGTTGACCATATGATGTTTGTCCATGA
GGAGGAAGATTCCGTCTTTACGGGTGATATTCACACTACAAGATGGCTAC
TCAGCTAGTTTCTCTGGCAGAGGTGGAGAGACTCAGCGCCTCGGTCGTAC
GGATATTGGGGGGCAATCCCGGCAAGATGTCTTGGGCCATGGCACGAGTG
TCTTCGAGGACCTCTCGACCTATATATCTAGCCTAAAGCGAATGCAGTAC
CGGGTTTCGGGTCGCGCCTATCCGGGCCACGGAGCTGTCATCGAGAATGC
GACAGCAAAGATCACAGAGTACATCAAGCACCGACAACAACGAGAGGATG
AAGTGGTTCGCGTTCTCCGGTATAACCACCTCGATGTCGCAGATGGGGAA
GCATCCCCGGAGCGTAAACGGTCCTGGACCCCGCTGGAACTAGTCAAAGT
GATCTACAAAGATGTGCCGGAAAGCCTTCATCTGCCTGCTTCCAATGGAG
TGTTGCTTGTTCTGAAGAAATTGGAGGAAGAAGGCCGGGTAAGCCGAGAT
GTCGATGGGCGATGGGTTCTGGAAACTGGGCGATCTGCGCTTTGAGCACG
AATACATATCTAATCGGCCGAGGTCGCCAACGCATCCTCATTGACACTGG
TCAGGGTGAACCCTCCTGGGCAGCCCGGCTCAAGACCCTCTTGGCAGAAG
AGAACGCAACTGTGCATCAGGCCCTCCTTACGCACTGGCATCCAGACCAT
GTTAAAGGCGTCCCTGACCTCTTGGCATTATGCCCGGACGTTGTCATCTA
CAAGAATGATCCCGATCTCGGCCAAGAGAGCATTGAAGACGGCCAGATAT
TCAGTGTTGAAGGTGCAACGCTACGAGCATACCATACCCCGGGTCATGCC
GTTGACCATATGATGTTTGTCCATGAGGAGGAAGATTCCGTCTTTACGGG
TGATATTCACACTACAAGATGGCTACTCAGCTAGTTTCTCTGGCAGAGGT
GGAGAGACTCAGCGCCTCGGTCGTACGGATATTGGGGGGCAATCCCGGCA
AGATGTCTTGGGCCATGGCACGAGTGTCTTCGAGGACCTCTCGACCTATA
TATCTAGCCTAAAGCGAATGCAGTACCGGGTTTCGGGTCGCGCCTATCCG
GGCCACGGAGCTGTCATCGAGAATGCGACAGCAAAGATCACAGAGTACAT
CAAGCACCGACAACAACGAGAGGATGAAGTGGTTCGCGTTCTCCGGTATA
ACCACCTCGATGTCGCAGATGGGGAAGCATCCCCGGAGCGTAAACGGTCC
TGGACCCCGCTGGAACTAGTCAAAGTGATCTACAAAGATGTGCCGGAAAG
CCTTCATCTGCCTGCTTCCAATGGAGTGTTGCTTGTTCTGAAGAAATTGG
AGGAAGAAGGCCGGGTAAGCCGAGATGTCGATGGGCGATGGGTTCTGGAA
ACTGGGCGATCTGCGCTTTGAGCACGAATACATATCTAATCGGCCGAGGT
CGCCAACGCATCCTCATTGACACTGGTCAGGGTGAACCCTCCTGGGCAGC
CCGGCTCAAGACCCTCTTGGCAGAAGAGAACGCAACTGTGCATCAGGCCC
TCCTTACGCACTGGCATCCAGACCATGTTAAAGGCGTCCCTGACCTCTTG
GCATTATGCCCGGACGTTGTCATCTACAAGAATGATCCCGATCTCGGCCA
AGAGAGCATTGAAGACGGCCAGATATTCAGTGTTGAAGGTGCAACGCTAC
GAGCATACCATACCCCGGGTCATGCCGTTGACCATATGATGTTTGTCCAT
GAGGAGGAAGATTCCGTCTTTACGGGTGATATTCACACTACAAGATGGCT
ACTCAGCTAGTTTCTCTGGCAGAGGTGGAGAGACTCAGCGCCTCGGTCGT
ACGGATATTGGGGGGCAATCCCGGCAAGATGTCTTGGGCCATGGCACGAG
TGTCTTCGAGGACCTCTCGACCTATATATCTAGCCTAAAGCGAATGCAGT
ACCGGGTTTCGGGTCGCGCCTATCCGGGCCACGGAGCTGTCATCGAGAAT
GCGACAGCAAAGATCACAGAGTACATCAAGCACCGACAACAACGAGAGGA
TGAAGTGGTTCGCGTTCTCCGGTATAACCACCTCGATGTCGCAGATGGGG
AAGCATCCCCGGAGCGTAAACGGTCCTGGACCCCGCTGGAACTAGTCAAA
GTGATCTACAAAGATGTGCCGGAAAGCCTTCATCTGCCTGCTTCCAATGG
AGTGTTGCTTGTTCTGAAGAAATTGGAGGAAGAAGGCCGGGTAAGCCGAG
ATGTCGATGGGCGATGGGTTCTGGAAACTGGGCGATCTGCGCTTTGAGCA
CGAATACATATCTAATCGGCCGAGGTCGCCAACGCATCCTCATTGACACT
GGTCAGGGTGAACCCTCCTGGGCAGCCCGGCTCAAGACCCTCTTGGCAGA
AGAGAACGCAACTGTGCATCAGGCCCTCCTTACGCACTGGCATCCAGACC
ATGTTAAAGGCGTCCCTGACCTCTTGGCATTATGCCCGGACGTTGTCATC
TACAAGAATGATCCCGATCTCGGCCAAGAGAGCATTGAAGACGGCCAGAT
ATTCAGTGTTGAAGGTGCAACGCTACGAGCATACCATACCCCGGGTCATG
CCGTTGACCATATGATGTTTGTCCATGAGGAGGAAGATTCCGTCTTTACG
GGTGATATTCACACTACAAGATGGCTACTCAGCTAGTTTCTCTGGCAGAG
GTGGAGAGACTCAGCGCCTCGGTCGTACGGATATTGGGGGGCAATCCCGG
CAAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_012662KJC3_012662Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012662-T1KJC3_012662-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012662-T1.cdsKJC3_012662-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012662-T1.utr3p1KJC3_012662-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012662-T1.exon5KJC3_012662-T1.exon5Aspergillus niger KJC3exon
KJC3_012662-T1.exon4KJC3_012662-T1.exon4Aspergillus niger KJC3exon
KJC3_012662-T1.exon3KJC3_012662-T1.exon3Aspergillus niger KJC3exon
KJC3_012662-T1.exon2KJC3_012662-T1.exon2Aspergillus niger KJC3exon
KJC3_012662-T1.exon1KJC3_012662-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_012662-T1.utr5p2KJC3_012662-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_012662-T1.utr5p1KJC3_012662-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR041516
DBxrefInterPro:IPR036866
DBxrefInterPro:IPR036388
DBxrefInterPro:IPR001279
DBxrefPFAM:PF00753
DBxrefPFAM:PF17778
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch8supercontigch8:4221204..4222999 -
Powered by Drupal