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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:4414649..4417185+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012728-T1 ID=KJC3_012728-T1|Name=KJC3_012728-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2537bp|location=Sequence derived from alignment at ch8:4414649..4417185+ (Aspergillus niger KJC3)
GTCGGACTCTTGTGTCTTCCCCTCCTTCTACAGCCGTGCCCCGACCTCAT
ATCAAGATACATTCACTCAAAGTGTTCATACCACCAAAGGATTTGATTCC
AATCCCTCTCTTGTGCTGTGTATCTCTCCACAAGAATAATCTACTAAAAT
ACAGTACGTCATCTAGATTAGATACGCTTCTTGCCTATGCTGACGACACG
CTTCGCTCACCTTTAAGAGACGAGAGCTACAGTACTCAAGCTGAGCTTTA
AACATATTCAGACCCATTATTCTCTTTCCTGTTATACAACGAGTATTCTG
TGCGTCAAACGTCGGCAGCAGATATACTCTCCTGATTGACACATATACGT
CGTCCATTGATAAAGATCATCACCGATCCATATTTAAACATGCAAGATTG
TGAAGTCTGCCGCTGCAGGAATACTGATATGGCTCTTATTGGCTGGCCTT
TTTTCCTTGAGAAAGCTTGAAGCTGGATTTTCGAAAGGCTGTGAATGGTG
TGAATTCTTTAGGAATTGTGCCAGCCTCTATGAAGATAAATGGGCCCATT
TACCGCGAGATAATACCAATCAGGTTTATTATAAAGTGAGCCGGATGCTT
TTTTCAGACACCCAGGAAGCTGAGCTTTCGTTGAATTGGCCGTCTCCTAT
CAATACAGCTGAATCTTCTTCAACGTATTTCGAGCCTACAAAACCTGTAA
TTGACAGCATTCGTCTTGAATTTGAAGTTCAAGATTATCTACGCCATGTC
AGATTCCCTTTCTATGAAATAGAAGCACTATGCTGATGTACAACAGGTAC
CCTTATGGTTACCCTTGAAGATAAACCCAAGTGCGAACACTTGGTGCCAC
GACTCTGCTGCGCCCCAATGCTTTGCTCTGATAGAATCGTGGATTAAGAG
ATGCGAAAGCGACCACCCTGAATGCAAAGGCATGCGTGAAAATTCTTTGG
TCAACCCTAAAAGGCTTTTACAGATATCCAGTACGCTGGAAGAGTCGTGT
GTCCACTTGGTTCAAGTCGAGAAATCCGATTCACCTAGATATACAGCGCT
AAGCCATTGTTGGGGAAACACTCTTGGCTTTAAAACAACCAGACAGAATC
TTGAGGCACACACAACTGAAGGTATCATGATTTCGAAACTTCCGCGAACC
TATCAACATGCAATTGATATATCTAAGAGAATTGGCTGTCAGTATGTCTG
GATCGATTCTATCTGCATCGTTCAGGATAGCAAGGAGGAGTGGGAGTTAG
CTTGTGAGACCATGGGGCATATTTACGGTAACGCACATGTTGTGATCGGA
GCTACACATGCGCCAAATGACAGTGCCGGTATATATACGGATAGGAAGAA
TAAGGTGGCCTATCTTGAAAACCGTGGGAAACGAGTTCCTATTCTTGTGA
GGGAGAAAATAAGGCATGATGTTTGGCAAAACGATGAACCCTCGTGGCAG
GCTTGGAACGACCAGAGTATGCCACTCTTTGGCCGTGCTTGGGCTTTTCA
AGAACGCCTTCTCGCTAGAAGAATAATACATTACACCCAAGAGGAGATAG
TCTGGGAATGCAGATCCGACTCCTGGTGCGAATGCGGGAGACTGGGCACT
GATCGATATCCAAGAGAAAGATTTCCTCAATCGAACAATTTCAAAACGAG
ATACGCCCAGGTCATAAAGTATGGCAGTGATATGGATCGTTTTGGGTTAT
GGCTTTCGGTGATCGATCAATACCAAGCACGAGGAATCACACACCCTAAA
GATCGCCTCCCTGCACTTTCAGCTATCGCAGAGCAAGTTAACCGGGATGA
CCTGATGGGGTTATATGTTGCTGGTATGTGGGTGGATTGGCTAGTGGGCT
CACTTTTGTGGCGGGCAGACGCAAATAGCTCGAAGGTGGCCAAAAAGGAC
GAAAGTCACAAGAGGCCCAATCCTTCTAGTGCTCCAACATGGTCGTGGCT
TTCCGTGGAGGGGCCTATCAGCACCTGGGGGAGAAACTCTCAATCGGATA
TCAAATTGGTGAACATCGAATATACGTTAGCCGGTGATAATATATATGGG
CCCTATAACACAGCAAAGCTTGAACTTGAGGGCCAGATGATTGGAGTCAT
GATACATGCTATGGCCTCCCAGCTATACATCGTTCGGTCATGCCAGAGTC
CGGAGAAAGCACATTTTCTACCTGACACCAACCCTTTCGAAATAAATCCA
AACAAGCTCATCGAGACGGAGTTTTACGCTTTGAAGCATAGCAGATCCCC
GTCGGTATTGTGGAATTGTCTGATCTTGACAGTAAGTGCCGGGGGAAAGG
AGTTTCGGAGGGTTGGAATAGCCGAGGTTGGCCTGGGTTGGTTCTCAGAT
GTTTCACGGAAAAGAATAACAATAGTATGACCGAGAAGTAAAGATATGAC
TATCTGGTGGAGCAGCAATACAGTCGTCCATCTTTAGGTAGCCATATCGA
ACTAAATTAGGGAGACAAGGCAGTAATCGTTCGAAACATGTGACATAGTA
GTATTCGATAGAGCCTAGTAAAAATCCACTATTAGGA back to topCoding sequence (CDS) from alignment at ch8:4414649..4417185+ >KJC3_012728-T1 ID=KJC3_012728-T1|Name=KJC3_012728-T1|organism=Aspergillus niger KJC3|type=CDS|length=3474bp|location=Sequence derived from alignment at ch8:4414649..4417185+ (Aspergillus niger KJC3)
ATGCTTTTTTCAGACACCCAGGAAGCTGAGCTTTCGTTGAATTGGCCGTC
TCCTATCAATACAGCTGAATCTTCTTCAACGTATTTCGAGCCTACAAAAC
CTGTAATTGACAGCATTCGTCTTGAATTTGAAGTTCAAGATTATCTACGC
CATGTACCCTTATGGTTACCCTTGAAGATAAACCCAAGTGCGAACACTTG
GTGCCACGACTCTGCTGCGCCCCAATGCTTTGCTCTGATAGAATCGTGGA
TTAAGAGATGCGAAAGCGACCACCCTGAATGCAAAGGCATGCGTGAAAAT
TCTTTGGTCAACCCTAAAAGGCTTTTACAGATATCCAGTACGCTGGAAGA
GTCGTGTGTCCACTTGGTTCAAGTCGAGAAATCCGATTCACCTAGATATA
CAGCGCTAAGCCATTGTTGGGGAAACACTCTTGGCTTTAAAACAACCAGA
CAGAATCTTGAGGCACACACAACTGAAGGTATCATGATTTCGAAACTTCC
GCGAACCTATCAACATGCAATTGATATATCTAAGAGAATTGGCTGTCAGT
ATGTCTGGATCGATTCTATCTGCATCGTTCAGGATAGCAAGGAGGAGTGG
GAGTTAGCTTGTGAGACCATGGGGCATATTTACGGTAACGCACATGTTGT
GATCGGAGCTACACATGCGCCAAATGACAGTGCCGGTATATATACGGATA
GGAAGAATAAGGTGGCCTATCTTGAAAACCGTGGGAAACGAGTTCCTATT
CTTGTGAGGGAGAAAATAAGGCATGATGTTTGGCAAAACGATGAACCCTC
GTGGCAGGCTTGGAACGACCAGAGTATGCCACTCTTTGGCCGTGCTTGGG
CTTTTCAAGAACGCCTTCTCGCTAGAAGAATAATACATTACACCCAAGAG
GAGATAGTCTGGGAATGCAGATCCGACTCCTGGTGCGAATGCGGGAGACT
GGGCACTGATCGATATCCAAGAGAAAGATTTCCTCAATCGAACAATTTCA
AAACGAGATACGCCCAGGTCATAAAGTATGGCAGTGATATGGATCGTTTT
GGGTTATGGCTTTCGGTGATCGATCAATACCAAGCACGAGGAATCACACA
CCCTAAAGATCGCCTCCCTGCACTTTCAGCTATCGCAGAGCAAGTTAACC
GGGATGACCTGATGGGGTTATATGTTGCTGGTATGTGGGTGGATTGGCTA
GTGGGCTCACTTTTGTGGCGGGCAGACGCAAATAGCTCGAAGGTGGCCAA
AAAGGACGAAAGTCACAAGAGGCCCAATCCTTCTAGTGCTCCAACATGGT
CGTGGCTTTCCGTGGAGGGGCCTATCAGCACCTGGGGGAGAAACTCTCAA
TCGGATATCAAATTGGTGAACATCGAATATACGTTAGCCGGTGATAATAT
ATATGGGCCCTATAACACAGCAAAGCTTGAACTTGAGGGCCAGATGATTG
GAGTCATGATACATGCTATGGCCTCCCAGCTATACATCGTTCGGTCATGC
CAGAGTCCGGAGAAAGCACATTTTCTACCTGACACCAACCCTTTCGAAAT
AAATCCAAACAAGCTCATCGAGACGGAGTTTTACGCTTTGAAGCATAGCA
GATCCCCGTCGGTATTGTGGAATTGTCTGATCTTGACAGTAAGTGCCGGG
GGAAAGGAGTTTCGGAGGGTTGGAATAGCCGAGGTTGGCCTGGGTTGGTT
CTCAGATGTTTCACGGAAAAGAATAACAATAGTATGAATGCTTTTTTCAG
ACACCCAGGAAGCTGAGCTTTCGTTGAATTGGCCGTCTCCTATCAATACA
GCTGAATCTTCTTCAACGTATTTCGAGCCTACAAAACCTGTAATTGACAG
CATTCGTCTTGAATTTGAAGTTCAAGATTATCTACGCCATGTACCCTTAT
GGTTACCCTTGAAGATAAACCCAAGTGCGAACACTTGGTGCCACGACTCT
GCTGCGCCCCAATGCTTTGCTCTGATAGAATCGTGGATTAAGAGATGCGA
AAGCGACCACCCTGAATGCAAAGGCATGCGTGAAAATTCTTTGGTCAACC
CTAAAAGGCTTTTACAGATATCCAGTACGCTGGAAGAGTCGTGTGTCCAC
TTGGTTCAAGTCGAGAAATCCGATTCACCTAGATATACAGCGCTAAGCCA
TTGTTGGGGAAACACTCTTGGCTTTAAAACAACCAGACAGAATCTTGAGG
CACACACAACTGAAGGTATCATGATTTCGAAACTTCCGCGAACCTATCAA
CATGCAATTGATATATCTAAGAGAATTGGCTGTCAGTATGTCTGGATCGA
TTCTATCTGCATCGTTCAGGATAGCAAGGAGGAGTGGGAGTTAGCTTGTG
AGACCATGGGGCATATTTACGGTAACGCACATGTTGTGATCGGAGCTACA
CATGCGCCAAATGACAGTGCCGGTATATATACGGATAGGAAGAATAAGGT
GGCCTATCTTGAAAACCGTGGGAAACGAGTTCCTATTCTTGTGAGGGAGA
AAATAAGGCATGATGTTTGGCAAAACGATGAACCCTCGTGGCAGGCTTGG
AACGACCAGAGTATGCCACTCTTTGGCCGTGCTTGGGCTTTTCAAGAACG
CCTTCTCGCTAGAAGAATAATACATTACACCCAAGAGGAGATAGTCTGGG
AATGCAGATCCGACTCCTGGTGCGAATGCGGGAGACTGGGCACTGATCGA
TATCCAAGAGAAAGATTTCCTCAATCGAACAATTTCAAAACGAGATACGC
CCAGGTCATAAAGTATGGCAGTGATATGGATCGTTTTGGGTTATGGCTTT
CGGTGATCGATCAATACCAAGCACGAGGAATCACACACCCTAAAGATCGC
CTCCCTGCACTTTCAGCTATCGCAGAGCAAGTTAACCGGGATGACCTGAT
GGGGTTATATGTTGCTGGTATGTGGGTGGATTGGCTAGTGGGCTCACTTT
TGTGGCGGGCAGACGCAAATAGCTCGAAGGTGGCCAAAAAGGACGAAAGT
CACAAGAGGCCCAATCCTTCTAGTGCTCCAACATGGTCGTGGCTTTCCGT
GGAGGGGCCTATCAGCACCTGGGGGAGAAACTCTCAATCGGATATCAAAT
TGGTGAACATCGAATATACGTTAGCCGGTGATAATATATATGGGCCCTAT
AACACAGCAAAGCTTGAACTTGAGGGCCAGATGATTGGAGTCATGATACA
TGCTATGGCCTCCCAGCTATACATCGTTCGGTCATGCCAGAGTCCGGAGA
AAGCACATTTTCTACCTGACACCAACCCTTTCGAAATAAATCCAAACAAG
CTCATCGAGACGGAGTTTTACGCTTTGAAGCATAGCAGATCCCCGTCGGT
ATTGTGGAATTGTCTGATCTTGACAGTAAGTGCCGGGGGAAAGGAGTTTC
GGAGGGTTGGAATAGCCGAGGTTGGCCTGGGTTGGTTCTCAGATGTTTCA
CGGAAAAGAATAACAATAGTATGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012728-T1.utr5p1 | KJC3_012728-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012728-T1.utr3p1 | KJC3_012728-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR010730 |
| DBxref | PFAM:PF06985 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:4414649..4417185 + |
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