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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch8:4514231..4516181+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_012761-T2 ID=KJC3_012761-T2|Name=KJC3_012761-T2|organism=Aspergillus niger KJC3|type=mRNA|length=1951bp|location=Sequence derived from alignment at ch8:4514231..4516181+ (Aspergillus niger KJC3)
TTTACTGGGGATAATGCAGGCTGGGGACCGGCATCCCGAGAGCTGCTCCA
ACTATCTACAGAAAAGAGTTGTTTCAGCTTTGGCTGTTTTGTCTCTCCAA
CCAGCAGCAAAAGGGGCGCAATGACACAGGTGGAGTCGTGAGTCCCCACA
ACGGCCGCTATCAAGTCGGTTAAATGAATGCTTACTGAATCATCTCCAGG
CACGGTTTACCTATGTCGACGACATAGGGACGAATGAGCGGGAAAAAAAA
ATCGATCGGCTCATTGATGATGAGAAATGGATGAGTACCGTGAACAGATC
CCGGGACTCGAGCTTAACATGAACCCTTTTGCGATGAACAGATTGCATGG
CCGGAGAAATGCCCTTGTCGGCGATAACGGTCGAACCAACGGATATGGCC
GGTGGAGTAGTGCGAGAACGAAAACGAGAACGAGAGCGAAAGCGAACCAA
TCGGCGTTGTCATAACTTGGATCTTATATACGACCGATCCACCAGGAAGA
GGACCGTCTCCAGGACCCGGCAAATCGGGGTAAAGAACGGGTCGACTATA
AATTTTATTCAACTGTCTTATATTAATAGGTCTGATCCCCATCAGGCTGA
CATACAATATGTGCGCGCATCTGTCAGGGTCGAAGCCGGCGTCATCTCAC
ATCTCTGTTTCTTTCTTTCCCTCGTTTCCTACTTTGCTTGCGTATATTGC
ATAGTATATTGCATATAGACCTATTCATAGCGGCTTGTTGCTTTTCCTTT
CGTTCCTCCCACCTATATCAACTATCTCTTCCACATTCACACCGATACAC
GAACACTACTAAGACCACCGAAACCAGAGGAAATCCCATCACCATGAGCC
TCACTTGCACGCACGTCACACCGGAATGTCCCGTCACGGCGACAACATAT
GGCTACTACCCCAACCTAGGCGGTAATATCTTTTTCGCCGTCTACTTTGG
CCTACTCGGCACCCTCCAACTTGGTCTCGGCGTCTACTACCGCTCCTGGA
CCATGTTGATAGCGATGGTAATCGGCGGGTACATGGAACTAGCGGGATAC
ATCGGCCGAATCTTAATGAACCATAATCCCTGGGACCAAGGCGGCTTCAA
ACTGCAAATTGTCTGTCTCGTGCTCGCCCCGACCTTCATCGCCGCCGGTA
TCTATCTCACCCTGAAGCACGTCATCCTCTCCTTGGGCCCGGAACACTCG
CGTCTCAAGCCCCGGCTCTTTACCTGGATCTTTATCAGCTGTGATGTCGG
ATCGCTCATTCTCCAGGCCGCAGGTGGTGGTGTTGCCGCTGCAGCGGGCA
GCGAGAATCAGAATTTGCTGAAGGTGGGCGATGATATCATGGTGGCGGGT
ATCGCCTTCCAGGTGGGCACGATGTCAGTTTGTGGTCTGTTGGCGCTGGA
TTTCTTTATCCGCGTTGTGAGAAAGGGACCTGGTTTGGGCGGCGAGAAGT
ATATTGATGAGAATGGGAATCTCACTGGGCCGAAGCACCTCAGGGTTGTT
GTTTGGGCGGGCATCGTGGCTTACTTTGCTACTTTGATCCGGTGTATTTA
TCGGTAAGTCCCTCTCTACTTCCACGCTCTCAAGCTATGGACGATACGAT
GTACTAACATAGTTTACCGTGGGTAGTATTCCCGAAATGGCCGGTGGATG
GGGTAACCCGCTCATGCAGAAAGAGAATGAATTTTTGGTTTTGGATGGAA
TGTGAGCATTCCTTTTGATCATGTTTTCCGTTCTATGTTGTGAATCCAGA
CGTACTGATTGGAGTTATTTAGGATGATGGCCATCGCCGTGAGCTGCCTT
ACCTACCTCTACCCTGGATTCTTCCTGCAATCTATCCGGAAGGGTATGAA
GAAGACTCCGAAAGCCTAGGTTATATACAAGATTTCATATTTTATTGTAT
ATTTATATATGCATAGCACATTCAATAGATACCCTTTTTACTATCGCTGG
A back to topCoding sequence (CDS) from alignment at ch8:4514231..4516181+ >KJC3_012761-T2 ID=KJC3_012761-T2|Name=KJC3_012761-T2|organism=Aspergillus niger KJC3|type=CDS|length=1578bp|location=Sequence derived from alignment at ch8:4514231..4516181+ (Aspergillus niger KJC3)
ATGAGCCTCACTTGCACGCACGTCACACCGGAATGTCCCGTCACGGCGAC
AACATATGGCTACTACCCCAACCTAGGCGGTAATATCTTTTTCGCCGTCT
ACTTTGGCCTACTCGGCACCCTCCAACTTGGTCTCGGCGTCTACTACCGC
TCCTGGACCATGTTGATAGCGATGGTAATCGGCGGGTACATGGAACTAGC
GGGATACATCGGCCGAATCTTAATGAACCATAATCCCTGGGACCAAGGCG
GCTTCAAACTGCAAATTGTCTGTCTCGTGCTCGCCCCGACCTTCATCGCC
GCCGGTATCTATCTCACCCTGAAGCACGTCATCCTCTCCTTGGGCCCGGA
ACACTCGCGTCTCAAGCCCCGGCTCTTTACCTGGATCTTTATCAGCTGTG
ATGTCGGATCGCTCATTCTCCAGGCCGCAGGTGGTGGTGTTGCCGCTGCA
GCGGGCAGCGAGAATCAGAATTTGCTGAAGGTGGGCGATGATATCATGGT
GGCGGGTATCGCCTTCCAGGTGGGCACGATGTCAGTTTGTGGTCTGTTGG
CGCTGGATTTCTTTATCCGCGTTGTGAGAAAGGGACCTGGTTTGGGCGGC
GAGAAGTATATTGATGAGAATGGGAATCTCACTGGGCCGAAGCACCTCAG
GGTTGTTGTTTGGGCGGGCATCGTGGCTTACTTTGCTACTTTGATCCGGT
GTATTTATCGTATTCCCGAAATGGCCGGTGGATGGGGTAACCCGCTCATG
CAGAAAGAGAATGAATTTTTGGTTTTGGATGGAATGTGAATGAGCCTCAC
TTGCACGCACGTCACACCGGAATGTCCCGTCACGGCGACAACATATGGCT
ACTACCCCAACCTAGGCGGTAATATCTTTTTCGCCGTCTACTTTGGCCTA
CTCGGCACCCTCCAACTTGGTCTCGGCGTCTACTACCGCTCCTGGACCAT
GTTGATAGCGATGGTAATCGGCGGGTACATGGAACTAGCGGGATACATCG
GCCGAATCTTAATGAACCATAATCCCTGGGACCAAGGCGGCTTCAAACTG
CAAATTGTCTGTCTCGTGCTCGCCCCGACCTTCATCGCCGCCGGTATCTA
TCTCACCCTGAAGCACGTCATCCTCTCCTTGGGCCCGGAACACTCGCGTC
TCAAGCCCCGGCTCTTTACCTGGATCTTTATCAGCTGTGATGTCGGATCG
CTCATTCTCCAGGCCGCAGGTGGTGGTGTTGCCGCTGCAGCGGGCAGCGA
GAATCAGAATTTGCTGAAGGTGGGCGATGATATCATGGTGGCGGGTATCG
CCTTCCAGGTGGGCACGATGTCAGTTTGTGGTCTGTTGGCGCTGGATTTC
TTTATCCGCGTTGTGAGAAAGGGACCTGGTTTGGGCGGCGAGAAGTATAT
TGATGAGAATGGGAATCTCACTGGGCCGAAGCACCTCAGGGTTGTTGTTT
GGGCGGGCATCGTGGCTTACTTTGCTACTTTGATCCGGTGTATTTATCGT
ATTCCCGAAATGGCCGGTGGATGGGGTAACCCGCTCATGCAGAAAGAGAA
TGAATTTTTGGTTTTGGATGGAATGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_012761-T2.utr3p1 | KJC3_012761-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007568 |
| DBxref | PFAM:PF04479 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch8 | supercontig | ch8:4514231..4516181 + |
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